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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0415300 |
| Transcript ID | LotjaGi1g1v0415300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G09900.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900; TrEMBL-Plants: tr|A0A0L9UGG9|A0A0L9UGG9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0415300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:90809393..90813619) extracted from Lotus japonicus Gifu genome v1.2.
ATTAATACAGAAGAGAAGAAGTTTGAAATTCAAATTGAAAATAAATGCAATAAATTTTGAAGCTGGAATTAAGAAGAAAG GGAAGTTTTGATTATACCTGTGATAGCGGATAATATCACGAGATTCCATCTTGTTACCAGGAATCTAGGTTCGAAGCTCG GCATGAACATCGCCGCAAAATTGAAGAAAGGTATCACAGGAGACCGAAAGAAGAACCCAAATCAATGAAAGATGAAAATA AGGAGGAGGAAGAAAAGCGCCAAGGAATATATGGTTTAAATCTAGCAAGAGAAAAGCAAGAGAAACTCAGATATCATGAT GCCTATTGCAGTCTCAAGAAATCAGGAAGCATCAAATGATCATGAAAGCAATCAAATCTTAGTATTTTAAATAATTCACA AACCAAATAAAAGGTAGAAACTCAATGATTAGTTCAGTACTGATTTATTCGTCAATATGACAAACATGGAATAAGAATTC ATTCTAAAAACTACCATAAGGCATAAGAAATAGAAGATAAACTTAAAGGCGTTTGATAAATAGGTGTACCTGATAATCTC TATCAAAGAATAGTACATCCGAACCAACAATCACTTTCATTTACGCAGTGTGTTTTAGATGATTTTGTGTAGATTGAAGA AAGGCGCCGTAAGGAAGAAAATTATGAAGCCAAGATCAGTGAAGGCCAGATCAGAAGAAAGTTGCGTGTATGCATCTTGG GGGCTGAGTGTATTGGTGGATATGTAGTAACACTGTGGAGGATGAAGGCCAGATCAGAAGCAAGAATATTTATAGCATTG GTAATATGGGAAAGGCGGGATTATATGAAGAATTTTTTTTTAATTTTTTTCAAAAAAATAAAACATTGATTTCGTAATTA TTGGTATATTCCAAATTTGAGATGATATTCTTATTTGATAAAGGCTGGCATTCAATATTTTTTTCCACCCGTATATAAAT TATTGGTATGTCTATTTTTAATTTATTCCAAACTTTGACAATTTTTAATTTATGTTTATTGTCAAAACGGTGTGAATCTT CAAAGCATATCACCAATTAAGCCTATTTTTTAGTTTTGTTAATTGTCATTGACAATTTTTAATTTATGTTTATTGTCAAA ACCGTGTGAATCTTGTATGAACAAAACCATGTGAATTAAATGTGCCGATTTAAATGACTTGGACCAATAAGAAATTGACA TATGGAAATTAAGTGAAATCAACCAATAAAAATGCGACATTTGGAAATTAGACTGCAACATGGCCCACTTTGGAGGATGG GCTTTATATATTATTAAGATTAGACACACATCAGTTCATCACATATATTTTATCTTCCATCTCATTTTCACCTATTTTTT TTAATACCTCTCTTATTTTCTTATTACATCACTCATCGCATCGCTTACTTTTCTCTTTTCTCCTCATACTTCTCTTTCCG TGGGTGAAATGGGTGTGAGTAAAACATTAAATAGAAAGCTTTGAAAACCATTAGTGCAAACTGCAAAAACATGAGACTAA ACTATTGTGATTATAAGAAATTGCAGGCCCAATCCAATCCACCAATATTTTTACAACCAAAAAAAAAAAGAACCTAAACC CCTTCCCTCTCTCTGTACAAGGCGACACCACAGGTATTGGATAAGCAACCAGTTCAACACACTTCACCTCCATTCTCTTC TTCCCTAAACTCAAAACCCTAATCTCTTTCTCTCTCTGTTCCACTGCGTCTTCTCGTGGTGAAACCAAACCAATGGATTT GGTAGCACCCCACGAACAATTTTGCTCAATTCACCACTTCCACACAGAAACCACAACGTGTAGCTTCAGAGCCAGGGTTT CATGCCCTTTCATTGTATCTTCTGACAGTGTTTGTCACTTCACAAAACTGAACAAGAAGAAGGCTTCTAGTTCTAGGTCT AGGTCTAGCAAGCATTTGGGCAATCGCGTATTCGCCATTTCCAGGTCTGAAACCTCTGGTTTGAATGGCAAATTGCAACA CTTCGGTAGAACCCCAAATAGGGATTTCAATGGCATAGAGTTTTCTCCCAATGGGGGGGTTAACGGTTCCGATAATTTCG AGGATTCTGAGAGTAACAATCATCTCCGGAGACTGGTTAGAAATGGGGAGTTGGAGGAAGGGTTTAGGCTTTTGCAGCGG ATGACTTACCAAGGCGATATACCGGATGTTATTGCTTGTACTTGCCTGATTCGTAATTTTTGCAGGACCGGGAGGACTAA GAAGGCGGCGCGAGTCATGGAGATTCTGGAGGATTCTGGTGCTGTTCCTGATGTTATTACCTACAATGTGCTGATTGGGG GGTACTGTAAATCAGGGGAGATTGGTAGGGCTTTGCAGATGTTGGAACGAATGAGTGTTGCGCCGGATGTTGTTACATAT AACACGATATTGCGAAGTTTGTGTGATAGTGGGAAGTTGAAGCAAGCAATGGAGGTTCTTGAGAGGCAGCTGCAGAGAGA CTGTTATCCTGATGTGATTACTTACACTATATTGATTGAAGCGACTTGTAAAGAAAGTGGGGTTGGTCAGGCGATGAAGT TGTTGGATGAGATGAGGATCAAAGGATGTAAACCTGATGTGGTTACTTATAATGTTCTTATCAATGGTATTTGCAAGGAA GGTAGGTTGGATGAGGCGATTAAGTTTTTGAACAACATGCCATCCTATGGTTGTCAACCGAATGTGATTACCCATAATAT TATTTTGCGAAGCTTATGTAGTACTGGAAGATGGATGGATGCTGAGAAGCTGCTAGCTGACATGGTTGGAAAGGGATGTG CCCCTAGTGTTGTTACTTTCAATATCTTGATTAACTTCCTGTGCCGGAAAGGGTTACTAGGAAGAGCCATTGATATATTG GAGAAGATGCCAAATCATGGTTGTACTCCAAATTCCTTAAGTTACAATCCATTGCTTCATGGGTTTTGTCAAGAAAAAAA GATGGATAGAGCAATTGAGTATTTGGAAATAATGGCATCTAGGGGTTGTTACCCGGATATAGTGACATATAATACTTTGC TTACAGCGCTATGCAAGGACGGGAAGGTGGATGTTGCTGTTGAGATACTGAATCAACTAAGCAGCAAGGGGTGCTCTCCT GTTTTGATTACTTACAATACTGTTATTGATGGGCTTTCTAAGGTGGGAAAGACAGAGGCTGCTGTGGAACTCTTGGAAGA GATGTGCAGAAAGGGTCTTAAACCTGACATAATTACATACTCTTCACTGCTTGGTGGGCTTAGTCGCGAAGGAAAGGTTG ATGAAGCCATCAAAATTTTCCATGACTTGGAAAGATTAGGTATTAGGCCCAATGCCGTGGCTTACAATGCAATCATGTTG GGACTCTGCAAGGCTCAGCAAACGAGTCGCGCTATTGATTTTCTGGAATATATGATAGGAAAAGGATGCAAACCTACTGA AGCTACATATACCATTCTAATAGAAGGCATTGCTTTTGAAGGATTAGCTGAGGAAGCTTTGGAGTTATTAAATGAGTTGT GCTTAAGAGGATTTGTGAAGAAAAGTTCAGCTGATAGGGTAGCAGTCAAGATGTAGGACAAAATGCATTTTTACATGGTA CTCCTCCTAGATAGACATGTTATAATTTTGAGCACTTAGATTTTGTTAGACTGCAATGTTAGCGACTTCATGGTCTGAAT TTTGGATTATTGTTTTGAGCGGAGAGAGGTCATTGTGAAATGCATGTCAATCTTTGAGTCAGATATTTTTATCCTACATT ATATTTTATACTGCTTGGGCCTTCCGTGGAGATTGTTTGTGAGTCTCAACTTGTAAGATATTTAAAGGATGACAGTTGCT TGATTGGAAATAGGGATACATTAATTTCAAAAGGCAATTTCAGACACCTCATTATTTTGTTTAGAGCAATTTCCTTCTTG GCAAATGGATGTAAAGAACATTACCTGTTGTAAAATGAAGTAGTGTGATTTATCTTCTGCTAGGGAACTGGACCAGAATT GAAAGATATGATGGAACAACTTAAGTTATATATCTTCTGTTATATTGATATTAGACAGGGGTTAAATGTGTGAGATTGAT TACCTAGAACCTATGAAGCACGGATACTTCTCATAGAAGACGTGTCCCCATGTCGGATACCGACACGACACCGACACTCG TACGATACCCGTACGACACGTATCCGACACTTTTTTGCGGTGTCCGAGCAAAACGTTTTTTTTCTTC
CDS sequence (LotjaGi1g1v0415300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTTGGTAGCACCCCACGAACAATTTTGCTCAATTCACCACTTCCACACAGAAACCACAACGTGTAGCTTCAGAGC CAGGGTTTCATGCCCTTTCATTGTATCTTCTGACAGTGTTTGTCACTTCACAAAACTGAACAAGAAGAAGGCTTCTAGTT CTAGGTCTAGGTCTAGCAAGCATTTGGGCAATCGCGTATTCGCCATTTCCAGGTCTGAAACCTCTGGTTTGAATGGCAAA TTGCAACACTTCGGTAGAACCCCAAATAGGGATTTCAATGGCATAGAGTTTTCTCCCAATGGGGGGGTTAACGGTTCCGA TAATTTCGAGGATTCTGAGAGTAACAATCATCTCCGGAGACTGGTTAGAAATGGGGAGTTGGAGGAAGGGTTTAGGCTTT TGCAGCGGATGACTTACCAAGGCGATATACCGGATGTTATTGCTTGTACTTGCCTGATTCGTAATTTTTGCAGGACCGGG AGGACTAAGAAGGCGGCGCGAGTCATGGAGATTCTGGAGGATTCTGGTGCTGTTCCTGATGTTATTACCTACAATGTGCT GATTGGGGGGTACTGTAAATCAGGGGAGATTGGTAGGGCTTTGCAGATGTTGGAACGAATGAGTGTTGCGCCGGATGTTG TTACATATAACACGATATTGCGAAGTTTGTGTGATAGTGGGAAGTTGAAGCAAGCAATGGAGGTTCTTGAGAGGCAGCTG CAGAGAGACTGTTATCCTGATGTGATTACTTACACTATATTGATTGAAGCGACTTGTAAAGAAAGTGGGGTTGGTCAGGC GATGAAGTTGTTGGATGAGATGAGGATCAAAGGATGTAAACCTGATGTGGTTACTTATAATGTTCTTATCAATGGTATTT GCAAGGAAGGTAGGTTGGATGAGGCGATTAAGTTTTTGAACAACATGCCATCCTATGGTTGTCAACCGAATGTGATTACC CATAATATTATTTTGCGAAGCTTATGTAGTACTGGAAGATGGATGGATGCTGAGAAGCTGCTAGCTGACATGGTTGGAAA GGGATGTGCCCCTAGTGTTGTTACTTTCAATATCTTGATTAACTTCCTGTGCCGGAAAGGGTTACTAGGAAGAGCCATTG ATATATTGGAGAAGATGCCAAATCATGGTTGTACTCCAAATTCCTTAAGTTACAATCCATTGCTTCATGGGTTTTGTCAA GAAAAAAAGATGGATAGAGCAATTGAGTATTTGGAAATAATGGCATCTAGGGGTTGTTACCCGGATATAGTGACATATAA TACTTTGCTTACAGCGCTATGCAAGGACGGGAAGGTGGATGTTGCTGTTGAGATACTGAATCAACTAAGCAGCAAGGGGT GCTCTCCTGTTTTGATTACTTACAATACTGTTATTGATGGGCTTTCTAAGGTGGGAAAGACAGAGGCTGCTGTGGAACTC TTGGAAGAGATGTGCAGAAAGGGTCTTAAACCTGACATAATTACATACTCTTCACTGCTTGGTGGGCTTAGTCGCGAAGG AAAGGTTGATGAAGCCATCAAAATTTTCCATGACTTGGAAAGATTAGGTATTAGGCCCAATGCCGTGGCTTACAATGCAA TCATGTTGGGACTCTGCAAGGCTCAGCAAACGAGTCGCGCTATTGATTTTCTGGAATATATGATAGGAAAAGGATGCAAA CCTACTGAAGCTACATATACCATTCTAATAGAAGGCATTGCTTTTGAAGGATTAGCTGAGGAAGCTTTGGAGTTATTAAA TGAGTTGTGCTTAAGAGGATTTGTGAAGAAAAGTTCAGCTGATAGGGTAGCAGTCAAGATGTAG
Protein sequence (LotjaGi1g1v0415300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLVAPHEQFCSIHHFHTETTTCSFRARVSCPFIVSSDSVCHFTKLNKKKASSSRSRSSKHLGNRVFAISRSETSGLNGK LQHFGRTPNRDFNGIEFSPNGGVNGSDNFEDSESNNHLRRLVRNGELEEGFRLLQRMTYQGDIPDVIACTCLIRNFCRTG RTKKAARVMEILEDSGAVPDVITYNVLIGGYCKSGEIGRALQMLERMSVAPDVVTYNTILRSLCDSGKLKQAMEVLERQL QRDCYPDVITYTILIEATCKESGVGQAMKLLDEMRIKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVIT HNIILRSLCSTGRWMDAEKLLADMVGKGCAPSVVTFNILINFLCRKGLLGRAIDILEKMPNHGCTPNSLSYNPLLHGFCQ EKKMDRAIEYLEIMASRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTEAAVEL LEEMCRKGLKPDIITYSSLLGGLSREGKVDEAIKIFHDLERLGIRPNAVAYNAIMLGLCKAQQTSRAIDFLEYMIGKGCK PTEATYTILIEGIAFEGLAEEALELLNELCLRGFVKKSSADRVAVKM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 78 | 115 | 38 | - | – | |
| ProSiteProfiles | 110 | 144 | 35 | 7.081 | ||
| Gene3D | 115 | 208 | 94 | 1.1E-19 | ||
| PANTHER | 118 | 207 | 90 | 5.2E-150 | – | |
| ProSiteProfiles | 145 | 179 | 35 | 10.358 | ||
| TIGRFAM | 148 | 181 | 34 | 1.0E-4 | ||
| Pfam | 176 | 208 | 33 | 1.1E-11 | ||
| ProSiteProfiles | 180 | 210 | 31 | 10.753 | ||
| TIGRFAM | 182 | 208 | 27 | 9.5E-7 | ||
| PANTHER | 203 | 379 | 177 | 5.2E-150 | – | |
| Gene3D | 209 | 275 | 67 | 6.3E-21 | ||
| Pfam | 211 | 260 | 50 | 1.8E-14 | ||
| ProSiteProfiles | 212 | 246 | 35 | 12.145 | ||
| TIGRFAM | 214 | 248 | 35 | 3.4E-7 | ||
| ProSiteProfiles | 247 | 281 | 35 | 11.827 | ||
| TIGRFAM | 249 | 283 | 35 | 4.6E-6 | ||
| Gene3D | 276 | 344 | 69 | 5.6E-25 | ||
| Pfam | 281 | 330 | 50 | 6.1E-19 | ||
| ProSiteProfiles | 282 | 316 | 35 | 14.239 | ||
| TIGRFAM | 284 | 318 | 35 | 2.2E-10 | ||
| PANTHER | 306 | 472 | 167 | 5.2E-150 | – | |
| ProSiteProfiles | 317 | 351 | 35 | 11.959 | ||
| TIGRFAM | 319 | 352 | 34 | 8.7E-8 | ||
| Gene3D | 345 | 414 | 70 | 2.3E-21 | ||
| Pfam | 347 | 380 | 34 | 1.0E-11 | ||
| ProSiteProfiles | 352 | 386 | 35 | 12.134 | ||
| TIGRFAM | 354 | 387 | 34 | 8.9E-8 | ||
| Pfam | 386 | 435 | 50 | 6.0E-15 | ||
| ProSiteProfiles | 387 | 421 | 35 | 11.86 | ||
| TIGRFAM | 390 | 423 | 34 | 1.3E-7 | ||
| SUPERFAMILY | 394 | 560 | 167 | 4.18E-8 | – | |
| Gene3D | 415 | 487 | 73 | 5.5E-24 | ||
| ProSiteProfiles | 422 | 456 | 35 | 13.252 | ||
| TIGRFAM | 424 | 456 | 33 | 1.2E-8 | ||
| ProSiteProfiles | 457 | 491 | 35 | 12.573 | ||
| PANTHER | 457 | 592 | 136 | 5.2E-150 | – | |
| Pfam | 458 | 504 | 47 | 8.2E-16 | ||
| TIGRFAM | 459 | 493 | 35 | 6.9E-11 | ||
| ProSiteProfiles | 492 | 526 | 35 | 13.219 | ||
| TIGRFAM | 494 | 528 | 35 | 3.1E-8 | ||
| Gene3D | 503 | 603 | 101 | 1.1E-22 | ||
| Pfam | 526 | 573 | 48 | 3.1E-14 | ||
| ProSiteProfiles | 527 | 561 | 35 | 11.52 | ||
| TIGRFAM | 529 | 563 | 35 | 1.5E-6 | ||
| ProSiteProfiles | 562 | 596 | 35 | 8.934 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0415300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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