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LotjaGi1g1v0420300.1

Overview

Field Value
Gene ID LotjaGi1g1v0420300
Transcript ID LotjaGi1g1v0420300.1
Lotus japonicus genome version Gifu v1.2
Description 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase; TAIR: AT1G19580.1 gamma carbonic anhydrase 1; Swiss-Prot: sp|Q9FWR5|GCA1_ARATH Gamma carbonic anhydrase 1, mitochondrial; TrEMBL-Plants: tr|I3T7V2|I3T7V2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0420300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:91389466..91394043) extracted from Lotus japonicus Gifu genome v1.2.

CCCAATTAATCTCGGAGCCAGGCCCATTTTGTACTGTGAACCCCAAATTGCTTCCACCTCTCTCTCTCTCTCTCTCTCTC TCTCTGAATCAGACTCGAAGTGTAAGAACTCAGGAGCTGATTGAAGAAGATCAATGGGAACCCTCGGAAGAGCGATATAC AGTGTTGGATTCTGGATTCGAGAGACCGGTCAAGCCATTGATCGCCTCGGTTCTCGCCTCCAGGGTGGCTACTTCATCCA AGAGCAGCGTTAGTCCCTTTCCTTTCCCAATCCCTTTCGTTTGATTCATTTCGTGAAATTCACAGCCATCTTAGCTGTAT GTGTTAGATTCATGGCATGTGTTATGGAGTTAGGGTAATTTCATTTTCAATCGACCTTGTAAACAACGACAAATGTTTTC AGCTCAGTGTATTATACAATAATGTTGTGGAAACATAGTGTCGTATCTTCAATTTCAAATGTGGTTTATGATTGATAGCG TCTAGGTTGAATCCAATAACGTAGGAAAATAAGGGTGTTCCAAGTTTTGTTGAGGTTGGGAAATACAAGTTATGACACAG TGAATTTTGTTAAGATTCTCTGGGCATTGTATGCCAATTACGGTTTACTGAAAATAACGAGACTCTGTTGTGTGATGACC CTGTTTTATACAAAAAGCACACTTGATATTCATTGTTGGAGGGTTCTATTTAGTGTACAGCACTGTGCTTAGATTTTTTG GGTGTTATTTGGAATAATAGTCTTGGTTGGAGCATATCTATTCTGAAATGGTATGTCACCTGCAATGTATGCATTTGTTT GTGGAATTTGTGGATTATCTTGCTAAAACTTCTAACTTCTAGTATTTATAGTTTATTTCCTTGCTCTCATTTTTTTTAGT GTTATATGTGGTTTACAATTTGACTTGAGAAAAAAGGGGCGGGGGGGGATTATTGGACGTTATTTACTGCTTCACCGTCC AACTGTGCAATATATCAAGCAATCTTGTTTCTACTTGTGTCTAGTGTCGAGGCATCGGACTCTGATGAACATATTTGATA AGGCTCCTACTGTTGATAAGGATGTATTTGTTGCACCAAGTGCCTCTGTCATTGGAGATGTTCAAGTTGGAAAAGGGTCA TCGATTTGGTATGGAACTGTCTTGCGAGGTAAATCAACATTTGAAATTTGAAAGATTTGACGCTTCTGCAGCTAACATGA TCTATTATAGAATAATTTGTAATGTATTACTATTTATATTCGGGTATCACTTACTGCAAAACAGAGATATCAGAGCTTTG AAACTGCAATACATCATCTTTCTTTTATTTTGAATCACATTTTTCATGGGAAAGTTAGAGTTCTCTGATAGTCTGATCTT TTATTGTAACTTAAATGTGAAATATATGTTGTCCCTCTGTTTATTTATGATTGTATGCATAATAATCATGTTTGAACTGA ACATTATGAATAGGTGATGTAAACAGTATTAGAGTTGGAAGTGGAACGAACATACAAGATAACTCCCTGGTTCATGTTGC AAAATCAAATTTAGGTGGGAAGGTGTTGCCCACTATTATTGGGAATAATGTTACTGTAGGTGAGTAATGTTTTTGCCATG TAAGTGAGCAATATTTTTTTATATGATCAAGAGTGATTCTACATTCTGCCATTAATGAAAATTCATGTTGAACATTTCAC TGAGCAGGTCATAGTGCTGTTTTACATGGTTGCACTGTTGAAGATGAGGCTTTTGTTGGTATGGGCGCAATTCTACTTGA TGGTGTCGTTGTTGAGAAAAATGCCATGGTTGCTGCTGGAGCCCTTGTGAGACAGAATACAAAGGTTCCATCTGGCGAGG TATGTCTAGCTGTTGTTGAGTATCAAAATGCATGTAAAGAATGTAGTGGAAAGTGCACTGTATTATATACTTAAGGATCC TAGCCAACAACCATATCCTGTGTACAAGTGTTTTACAAGCAAGAAGAAGACAAACCAATTTTAACATTACCAAAAGGCAA TTTCGAGAGTGTCTGTACTATCCTAGTCCCAGCCAAGTGCAAGCCTCACCCTGATTCCCTCCCTTTACACTGTTATACTC TCGCTTCAGTCAACATGCTCACCTCACTCCCTCCCCCCCACCAATGCCACCTCAACAGACAGTTAGGCCTCCATTAGGGG ATGATTCGGGGGAGCAAACCTCCTCTTTCTACTCACATAGACCTTAGAAATTTCAGGCCTTGAGAGTAGGCTTATAACAA CTGCTCACTCCCTATGTCTTAGGTCACCACTACCACCCTTCACCACGGCACCTGTCCACAAAAAAAAAAACTTGATTTCT ACTAAAAGGTATAACTTTGGTTTGAAACCCTAGAAAACAAGAATATGGTGAGACAACATGAACACAAAGATGTCATTTTT ATTACTAGATGAGTGTTAAAGCCCTTCCCTCAAGTATGTAATGCAGTCTTATACACTGAGCTCTACCCCGATACCTCTGG TTAAGCTGGATCCACCCCTTGCTAGCTGATATACTCTCTCGGTGGCAGGACATGACATGATTATATTACAAAATATAAAA TTAATTTATATAAAACAAAAATCTGTCATCAAAAGGCAGAATCAATGTTTTTAAGCGAGCATGAGTCATTGAAGATGTAA ATAAACTGCTATTGTGTATCTAATTATTGTGGTACTCTCATCTATATTAGTATTAAATTCAAAAAATAAAGGTCGACAAA TTGTAAATGCAGTTAGGAATAGGATTATATGAAATATTCAACATAGATACTCGTCTGACAGGTATTACTACTATAAAATG TATGTTCTTCCTTGCTAAACCCTCACCTTTCTCAACTAGAATCCTATATAATATCATGGTTATCACATTGGCTCTTGGTT AAGCAACATTGGCTCACATTGCCTCCATGTAGTTTTTATCATAAGATTCAAACTATTTGTCCTTTCTTGTTTCCATTGGG GAAAAAATCAAATAAAGTTTCTTATTTAACCTTCTCTTAGGCTTTTGGTTTTAAAGCATGTTTCCGAAAATTATCATGCT TTTGTCCATTACATAGAAAGCCTTTGAATGCCCTCAGGTGTGGAATTTAGGACATGGTTGGCCTTGGCCCAATTGCAAGA GCTTCCCCGATTTGTATTTATCATGTGGTGGAAAGCATTCCTTAATTTTGATTATGGTGTGCTATATTTGTATCATTCAT GATATGTTAGCGAAACTTGCATATTTTGTAGGTATGGGCAGGCAATCCAGCAAAGTTCCTGAGAAAGCTCACTGATGAAG AGATAGCTTTTATCTCCCAGTCAGCCACCAATTATACCAACCTTGCACAAGTCCATGCAGCTGAAAATTCAAAATCGTTC GATGAAATTGAGTTTGAGAAGGTTCTGCGTAAGAAGTTTGCACGTAGAGATGAGGACTATGACTCTATGATTGGGGTTGT TCGTGAGATCCCACCAGAACTTATTCTTCCCGATAATGTCTTGCCTGATAAAGCAGACAAAGCCATCCAAAAATGAGGTC TTTAAAAGCATTGTCTTCCATTCCAAATTTCTAATCTTGAAATGACATCAAGGGATATCACGCTTTTTTTTTTGTTTCAA AATCATGGAGGGATTATTTCCATTCCCAATAATACAGGACATGTTTTAGGCTAGAATTATGGCTCCTTTGGAGATCCAGT AAGAAATTGTTCCATAATATTTCAAACTTGGTGCATGTTTGAAAATCTTTCCAGAATCAAATCTGCGGAGAAGCTCTTGT GAGTAGCTTTTGAATGTCTGTGTTGATTCTGACGAAAAAGAAACTGATCTAAACATGCTAGAATTGTCTGTCTGTCTTTT GATGTATCCTATTCCTATGCAAAGTGATTTCAATTTTTTTTTTCTTGCTCTTTTAGGTTCATGACATGACATTATTCATG CTTACTTGGTTCATCAGCTCTCGTTGAAATATTACTAATATGAGGACACTGACGCCTGTGTTTGTCTTCACTCTTCAGTG TTGACATGTGCACCATCCTTTTTGAACGTAGGATTCTGGTTCGTTTGGTTTTTACAACCTATTTCTAGCCAACTAGAAAT TTACGTTCAGGGTCATGATTCTTTCAAAGGGCGAAATGTTTGAATAATCCATCTCTGTTAAAATTAACCAAGAGTGGAGT ATGTAATAAAGATAAATAATTAGAAGAAACAAATTAGACTCTATACATCTACAGTCAATCTTAGCAATATTACAGTCAGT ATGTGTATTAAACAAGCTTCTGGTAGGGTTTGCATCCGACGGTGCAGTTTGCTGCCTTTCTGCCCTCAAGCCCCTCCTCT TTTGGGGTTTCCCTATGTTGCCCAATCAAAAAAAAAAAGGACACCTAAGCAATCCGAATAAGCTACTTTATCTCTAGTTT ATTTATTTAAAATAATAATTTATCTTTTGGGAAAAAGACATCTTACGAGTCACTTTAAAGTTTATAAAATAAGCAAATTA GACCCGACCTGTCTCAAAGAAAATCACTATTAGTATTTTGGTACATGTATCATGCCATTAAAATGCTAGCAAATTCTAGC CTATCTAATATATAGTTG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0420300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGAACCCTCGGAAGAGCGATATACAGTGTTGGATTCTGGATTCGAGAGACCGGTCAAGCCATTGATCGCCTCGGTTC TCGCCTCCAGGGTGGCTACTTCATCCAAGAGCAGCTGTCGAGGCATCGGACTCTGATGAACATATTTGATAAGGCTCCTA CTGTTGATAAGGATGTATTTGTTGCACCAAGTGCCTCTGTCATTGGAGATGTTCAAGTTGGAAAAGGGTCATCGATTTGG TATGGAACTGTCTTGCGAGGTGATGTAAACAGTATTAGAGTTGGAAGTGGAACGAACATACAAGATAACTCCCTGGTTCA TGTTGCAAAATCAAATTTAGGTGGGAAGGTGTTGCCCACTATTATTGGGAATAATGTTACTGTAGGTCATAGTGCTGTTT TACATGGTTGCACTGTTGAAGATGAGGCTTTTGTTGGTATGGGCGCAATTCTACTTGATGGTGTCGTTGTTGAGAAAAAT GCCATGGTTGCTGCTGGAGCCCTTGTGAGACAGAATACAAAGGTTCCATCTGGCGAGGTATGGGCAGGCAATCCAGCAAA GTTCCTGAGAAAGCTCACTGATGAAGAGATAGCTTTTATCTCCCAGTCAGCCACCAATTATACCAACCTTGCACAAGTCC ATGCAGCTGAAAATTCAAAATCGTTCGATGAAATTGAGTTTGAGAAGGTTCTGCGTAAGAAGTTTGCACGTAGAGATGAG GACTATGACTCTATGATTGGGGTTGTTCGTGAGATCCCACCAGAACTTATTCTTCCCGATAATGTCTTGCCTGATAAAGC AGACAAAGCCATCCAAAAATGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0420300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGTLGRAIYSVGFWIRETGQAIDRLGSRLQGGYFIQEQLSRHRTLMNIFDKAPTVDKDVFVAPSASVIGDVQVGKGSSIW YGTVLRGDVNSIRVGSGTNIQDNSLVHVAKSNLGGKVLPTIIGNNVTVGHSAVLHGCTVEDEAFVGMGAILLDGVVVEKN AMVAAGALVRQNTKVPSGEVWAGNPAKFLRKLTDEEIAFISQSATNYTNLAQVHAAENSKSFDEIEFEKVLRKKFARRDE DYDSMIGVVREIPPELILPDNVLPDKADKAIQK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13061
1 272 272 2.7E-172 –
PANTHER
PTHR13061:SF31
1 272 272 2.7E-172 –
Gene3D
G3DSA:2.160.10.10
44 229 186 3.3E-61 –
SUPERFAMILY
SSF51161
47 213 167 8.73E-47
IPR011004
CDD
cd04645
54 212 159 1.60843E-87 –
Pfam
PF00132
57 87 31 3.0E-4
IPR001451
Pfam
PF00132
136 170 35 1.9E-4
IPR001451

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0420300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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