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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0432300 |
| Transcript ID | LotjaGi1g1v0432300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Methyltransferase; TAIR: AT1G20330.1 sterol methyltransferase 2; Swiss-Prot: sp|Q39227|SMT2_ARATH 24-methylenesterol C-methyltransferase 2; TrEMBL-Plants: tr|I1K7G0|I1K7G0_SOYBN Methyltransferase; Found in the gene: LotjaGi1g1v0432300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:92717017..92720316) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTTTTCCAACTCATTTTTACCTATTTTTCTCTTCATTTATTAATTTTTTTCTATCACATTATCCATCATATTACTCT TTTTTCTCTGTATAAATTTTCTAAACAAATACAATAAATAAAGCAAGAGAGAGAAAGATAAAAAACTCCAAATTGGTTTC ACTCACTCACTTAAGTAGTGAGTGTGAAACTAGTTCCACCCAGAAGCAAAGCGCAGCCCCCAAAGTAGGGTGAGAAATCT CTCTCTTTCTCTCCTCTCTGTTTTTGATCTTCATCCCTTCCCTCTTTTGGAATGGATTCCCTCTCTCTCTTCTGCACCGG AGCTCTCATCGCCGGCGGCCTATACTGGTTCGTCTGCGTTCTCGGCCCCGCCGAACAAAAGGGCAAACGCGCCGCCGATC TCTCCGGCGGATCCATCTCCGCCGAGAAAGTCCAGGACAACTACGACCAGTACTGGTCCTTCTTCCGCCGCCCCAAGGAG ATCGAAACCGCCGAGAAGGTCCCCGATTTCGTCGACACCTTCTACAATCTCGTCACCGACATCTACGAGTGGGGTTGGGG CCAGTCCTTCCATTTCTCCCCTTCCATCCCCGGGAAATCTCACCGCGACGCCACGCGCCTCCACGAGGAGCATGCCGTCG ATCTAATCGAGGCCAAGCCGGGTCACAAGATCCTCGATGTGGGATGCGGAGTTGGTGGGCCCATGCGTGCCGTCGCCGCC CACTCGCGAGCCAACGTCGTGGGGATCACGATCAACGAGTATCAGGTGAATCGGGCCAGGCAGCACAACAAGAAGGCGGG TTTGGATTCTCTCTGCGAGGTGGTGTGTGGGAATTTCCTCCAGATGCCGTTTTCCGATGAGACATTCGACGGCGCGTACT CGATCGAGGCGACATGCCACGCGCCGAAGCTGGAGGAGGTGTACGCGGAAATCTTCCGGGTTCTGAAGCCGGGGGCTCTC TACGTTTCCTACGAGTGGGTCACGACGGAAAAGTACGTGGCGGAGAATCCTGAACACGTGGAGGTGATTCAGGGGATCGA GAGAGGCGACGCGCTGCCAGGGCTGAGGAGCTACGCTGACATCACTGCGGCGGCGCGTAAGGTGGGGTTCGAGGTGGTGA AGGAGTTGGATCTGGCGAAACCACCGGCGCTTCCGTGGTGGGACCGGTTGAAGATGGGTAGGATCGCGTACTGGAGGAAC CACATTGTGGTGACTGTTCTCGCCGCATTGGGAATCGCGCCGAAGGGGACGGTGGATGTTCATGAGATGCTGTTCAAGAC CGCTGACTTTTTGACCAGAGGAGGTGACACTGGAATCTTCTCCCCGATGCATATGATCCTCTGCAGAAAACCCAAAGTCA ACAAAAACGACGACGCTTAAACTTGAAGAAAATTGAGATGAAATCAGATTGAGGTAGTACCCTGAAAATCTCGCTAGCAC CCTGTTTCTGCTACTCTTTTTTTACTTTTCTATAATTTTGGATTTAACTTATTATTATTATTGTCAATGTGAACTTCATG TAATATTTGGTTTTGAATTTTCTAATGTAGTTCTTTAATTTTAATTTCCATCTGCTTGGGCGGTATAGCCTTATTGATTC TTGATAATGGGGCTCTTTTTAGTGTTTCCAGTGGAATTTATTTTAGTAGCTTAAAGTGAGGTTCTGATTGGGATGAATTA GTAGCATAAAGTGAATTTATCTATGGTTAGTGTGACAGTGGGGAAGGGGGAATAAGGTCTTTTGATTTTGGGCATTAAAG GGGAATAAAAAGATATGTACTTTGAATCTTGTGATCTGATTCATGGTGCTGGTTGTTTAAGAAGATATTTATTTGAATAG ATCATGATGCTGAGTGTCTATTTGGAGAATATAAGTGGATCCACATTTAATAGAAATGCACTTGAAGCAACTAATAGTTG TTGGATCCGTGTCTAGCAAGAGGACGAAGATCCAGTCTCTATATAAACAGCACATGATAGATGGCAACATTAGAGTGTGA TTAGGTGGCGACCACTGTGATGCTAGTTGTAACGGAACGTGATTATGCTTAAGGTTTTCAGAGTGTGAATCTGGCCTTGA TGTGTTGTTTTTGTCTTTGTGACGTTGTGCGTGGATATTTGATATTTCAGTTGAGGGGCCACACATGCGACGACATGTGG CCCGCACTTGCTTTGGATCTGGCAATCGTATGTTTGGTCTCACACACTCATGACTCATTGTGCTCCCGTGATGCTACCAA AGCAGCGTAGGTTCCTTTTTTGTTTGTTACCACAGCTTAGGTTAAATTAAACACACTATCTTTTCAATAACAAGAAAACA ACCCATTTAAAACATATACTATCATAGCTCCTAAATAGGGAAAAAAAGACTCATCTGCCGACCTACCCAATCTCGATTAT ATGCAGCTTGATATGGTCTGTGTTTGGCAATTTGATATCTTTCCACATAATTGATTGATTGATTGAGAGAAGTTAGCTGA GTAGATTTTTAAGGTGATATCATTTTCAGTGTAAGTGTAAAATAGTTTTAATCAGAGTTTGTCACAACAAACATATAATT TTTTATTTGATAGTCACATACTTTTAATCCATTCCAAATACGCTCACAATTGTTGCTTATAAATAGGACCGGAGGGAGTA GTTGATAGTATACCAAACAAGTCATAGGCTTCGTTTGGCCCGGCTTATTTCGAACTTAAAAGCTACTTTTAAGTCAAAGT TAAAAATATGAGCTTTTAATAAAAGTAGAAGCTGATTGTCAATTTTCATTTCTTTTATAACTTAAAAGCTACTTTTAAGT TAAAAGTTGTTTGGTAAAGGTGATCATTGGTGCAACTATTTGTGTGCTGTGAGGATTGTTAAAGAAAGGAATTACTCTGA ATGTATATACTTTCACTGCAATTTTTTTTTTTGAAAGGATAATAATAAACCAGAAACACTAGAGACAAAAACTCCAGAGC AGTACAACCATGACCCAAAACAGAGACAATGCAAAGAAACAAGAAAAGAAACAGCAACTAAAGAAAGGGAAAAGCAAAAA CAAGCACATCAAAACAACATCAGACACCAATTTCTGGGCTTTGCCGCATGAGTAAGATTGTTGAAGCATCCAAACTTTTC GATGAATTGGCGGAAAGGAAAATCAAGCCAACTAAGGTGACATATAATGTATGATTGAAGGTTGTTGCAGGGATCACATA GTCGGCAAAGCCTTTGAAATTCATAGTTTGAACTTTGAATTGCTTGAAGATATGCTCCAGCAGGGACATGTTGTGAAATT TAAACTCATCCACTTCTTAA
CDS sequence (LotjaGi1g1v0432300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCCCTCTCTCTCTTCTGCACCGGAGCTCTCATCGCCGGCGGCCTATACTGGTTCGTCTGCGTTCTCGGCCCCGC CGAACAAAAGGGCAAACGCGCCGCCGATCTCTCCGGCGGATCCATCTCCGCCGAGAAAGTCCAGGACAACTACGACCAGT ACTGGTCCTTCTTCCGCCGCCCCAAGGAGATCGAAACCGCCGAGAAGGTCCCCGATTTCGTCGACACCTTCTACAATCTC GTCACCGACATCTACGAGTGGGGTTGGGGCCAGTCCTTCCATTTCTCCCCTTCCATCCCCGGGAAATCTCACCGCGACGC CACGCGCCTCCACGAGGAGCATGCCGTCGATCTAATCGAGGCCAAGCCGGGTCACAAGATCCTCGATGTGGGATGCGGAG TTGGTGGGCCCATGCGTGCCGTCGCCGCCCACTCGCGAGCCAACGTCGTGGGGATCACGATCAACGAGTATCAGGTGAAT CGGGCCAGGCAGCACAACAAGAAGGCGGGTTTGGATTCTCTCTGCGAGGTGGTGTGTGGGAATTTCCTCCAGATGCCGTT TTCCGATGAGACATTCGACGGCGCGTACTCGATCGAGGCGACATGCCACGCGCCGAAGCTGGAGGAGGTGTACGCGGAAA TCTTCCGGGTTCTGAAGCCGGGGGCTCTCTACGTTTCCTACGAGTGGGTCACGACGGAAAAGTACGTGGCGGAGAATCCT GAACACGTGGAGGTGATTCAGGGGATCGAGAGAGGCGACGCGCTGCCAGGGCTGAGGAGCTACGCTGACATCACTGCGGC GGCGCGTAAGGTGGGGTTCGAGGTGGTGAAGGAGTTGGATCTGGCGAAACCACCGGCGCTTCCGTGGTGGGACCGGTTGA AGATGGGTAGGATCGCGTACTGGAGGAACCACATTGTGGTGACTGTTCTCGCCGCATTGGGAATCGCGCCGAAGGGGACG GTGGATGTTCATGAGATGCTGTTCAAGACCGCTGACTTTTTGACCAGAGGAGGTGACACTGGAATCTTCTCCCCGATGCA TATGATCCTCTGCAGAAAACCCAAAGTCAACAAAAACGACGACGCTTAA
Protein sequence (LotjaGi1g1v0432300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSLSLFCTGALIAGGLYWFVCVLGPAEQKGKRAADLSGGSISAEKVQDNYDQYWSFFRRPKEIETAEKVPDFVDTFYNL VTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEHAVDLIEAKPGHKILDVGCGVGGPMRAVAAHSRANVVGITINEYQVN RARQHNKKAGLDSLCEVVCGNFLQMPFSDETFDGAYSIEATCHAPKLEEVYAEIFRVLKPGALYVSYEWVTTEKYVAENP EHVEVIQGIERGDALPGLRSYADITAAARKVGFEVVKELDLAKPPALPWWDRLKMGRIAYWRNHIVVTVLAALGIAPKGT VDVHEMLFKTADFLTRGGDTGIFSPMHMILCRKPKVNKNDDA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 356 | 356 | 1.7E-222 | – | |
| PANTHER | 1 | 356 | 356 | 1.7E-222 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 6 | 27 | 22 | - | – | |
| Phobius | 28 | 362 | 335 | - | – | |
| Gene3D | 44 | 304 | 261 | 1.7E-57 | – | |
| SUPERFAMILY | 77 | 354 | 278 | 2.37E-55 | ||
| ProSiteProfiles | 77 | 354 | 278 | 115.44 | ||
| CDD | 126 | 230 | 105 | 3.0953E-15 | – | |
| Pfam | 128 | 224 | 97 | 4.5E-21 | ||
| Pfam | 292 | 354 | 63 | 3.0E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Steroid biosynthetic process | The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification. | ||
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of LotjaGi1g1v0432300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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