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LotjaGi1g1v0435600.2

Overview

Field Value
Gene ID LotjaGi1g1v0435600
Transcript ID LotjaGi1g1v0435600.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Carboxypeptidase A6; TAIR: AT5G42320.1 Zn-dependent exopeptidases superfamily protein; Swiss-Prot: sp|Q29NC4|CBPA1_DROPS Zinc carboxypeptidase A 1; TrEMBL-Plants: tr|K7KSJ5|K7KSJ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0435600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:93003953..93006950) extracted from Lotus japonicus Gifu genome v1.2.

ATGGAGGAGATTAGGGCCTTGGTCCATCGTCATTCGGATAAACTCACTGTGGAGACACTTAGAGCTGGAAACAAAGGATA TGGCGCTGAGGTTCCGGTGGTTACTTATTGCAAGCGGAAAAAAGAGAATGATGAGAGATTGAAGCTTCGGATACTTCTTG TAAGCTTTCTATATATTAATTGGTTTTGGTGGTAAACTTTCGTGTTAGAAGATTGTTAGTACTGCAAATAGTTGTGTGTT GTCTACTAGATTCTCCTTCGAGAGTTGAATGCCAACAAGGGAAGAAATTGTGATAATATAATAGCTAATTTGTAGTGGGG GCGTTCTTTTAGAGAAAGCTATAATAATTAAGCTTGTAGTGGATAGTTATCTCAAATTGGTTATTCTGGTGTTTTTGACA GATGATTCCTTGTCTTCCAGAGTTTTGGGCAGCATGGAAGGGAGCTGATTACCACAGAACTTGCTTTAAGGATTTTGTCT ATTCTAAGTGAAGAACAATTTCTACCCGGCATGGATCAAGCTTCCTTAAACAGTACACTTGACAAGCTAGTCATAAAAGT AAGTAAAAATTTCTGCCATAAGTATGTGATAAACTGATAATCATGAAATCCATTATGGAACTGAGCTCTGATTATCATGA TGCTACTAAAATATATGAAGTATTCCCACTCTGTCCCATGAGTTCCACATTGAAGCTTTAGACTTACGTACTTCTACTAA GTGTAATAGAATTTAGATGAGAAATATATGCATCTGTAGTCTGATACAGTTAACAGGAGAGATTTGGTATCTTTTCAGTG CTGATGTCTAATTGCTTAACAGGTAGTTCCGATGGAAAACTGGAATGGCCGCAAACTTGTTGAGGCTGGAGATCTTTGCG AGAGAAGAAATGGTCTTTTTTTCCCCTTTGTAATGTTTAGTGTAATAATTGACTAGCTTTGAAACCTGAGTTTATATTAT GTTGCAGGCAGAGGAGTTGATCTCAACCGGAACTGGAGTGTAGACTGGGGAAAAAAGGAGAAGGTTTGTTATGTGTCTTC AATCTATCTGTCCATGCCATAAACTTTGTTAATTAATGGTGCTTTTACTGTGCCCAGTATTGACTTGCACCTAGTAGATA GATTGTGATAACAACATAGTGTGACACTTGAAGGGGCTTTAGCCAGATGATTTTTCTCATTCTTCCTACTATCTGGATGT CAATCTGTGCACTGATCTCTTTATTTTCTGCCAATATGTCAAATCGTGTGATGTTTTTGAAGTATTTTTTTTTCATTTTA ATAATTGTTCAAATCTATAGGATTATGATCCTTATGAGGAGAATCCTGGACTCGCTCCATTTAGCGAGCCTGAAAGTCAA CTTATGCGGAATCTTGCGATATCTTTTCAACCGCATATATGGGTCAATGTGCACTCTGGAATGGAAGTAAGTTTGCTTCA TTTTTCAGCTGTTTGTAGAAATCAAATTCAATGTTCCCATATACTTTTTATCTGTATCCATGCTATAATTCAGGATGTGC ACATTATGTATCCCAAGCAGGAAGAATACACTCTGATAGATCTATTAGCATCATGCATCAATTTCTTCATGATGGTTCAT TTGATGTTTGGAGAACTCCAGTGGCTTAAAACCATGTTTTCTCCATATTTTGTTGAAAAATACAAGAACTATCTTTAGTT GAAATTTTCTAGCTTGACACGCATTACAATAGAATCTTCCTAAAGCATGAATTTTTCACATATGCAGGCTCTTTTTATGC CATATGATCATAAAAATAGAACACCTGATGGGTTGCCATTGCAACGGATGAAGTTGTTGCTTGAAGAAGTAAACCAGCTT CATTGCCAAAAGCGTTGCATGATTGGGTCTGGAGGCGGTTCCGTAGGGTTAGTTGATTTTTATTTGAATATGATCATCAT AGCTTGATTTTTATTTGAATCTGATGATATCTGATACAAATTTTCACTAGGCCAAATGTTTGTGTTTTGTATATATGTTT GCTTTCTGTTTCCTGTCTTATTGGGTAGAATAAAAAATAGTGATTCTGTAGGATTAGTTTATTTGTACTGGAATATGATT AATGACTGTAAAAAGGTTTCTTACTTTCACTAATTACATTTTTTCCTGCCTTCTACTGCTTTTGATAATTTGGAGTTAAA AGAATGAAAATGGTAAAGTTTAAGAGTACAACATACCTGATCTGTTTCAGTGCTTCAAATTGACTGGCTTGAGGTAGTCA AATGACGCCTTTGCAATGCTGTCAATAGTCTATATACTTCAGTCCTTCCTCAAGTTTAGAATTTGCTCATCCAGGTATTT TGCTCACGGGACTGCAACAGATTTCATGTACGACATCGTGAGGGTTCCCATGGCTTTCACATTTGAGGTATGCCAGCAGG ATCTCTTTCCTTTTTCGTATTATAGCAATTTTGTTCTAGGGGAGTACTAACATCTTATATTGACGGGCAGATATACGGAG ATGGAACAGCCTCATCAAAAGACTGTTTTAAAATGTTTAATCCAGTTGACCTTGCTAGCTACAACGTATGTTACTTCAAA ACTTCTCGGCAATGATCACTCCATTAGTCCATTCGTTCTAAGTTTATTTGGAACCTGTTTCTTCTTCCTTTATATGCAAA GTGTTTAAGAAAGTAAAACGACAGTGATCCTAATGTTTGGCATTTTTTTCATTTTCAGAGAGTTCTCAGTGACTGGTCTG CAGCATTCTTTACGATTTTTAAATTGGCACCACTTCAGCTTGGTGAGTCTGTCTTGAAGTTGGATAAGTTGGTATCAATA GATGAATATCTAGATGGGTATTTGATGGAGAGGAGAAATAGATACGGAAAAAAGATAGAGGTGCTTGAGCTTGGAATGCA AGAAATAAGAACGTATTTCAGGCTCTTTTTACTATCTTCAGTTTTACTATTGTTCATGTTTTGTTCTAGAATTTCAAAAA GTAAGTGTAGACCAATTGTTGCTGCTATGCCCCTATAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0435600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGGAGATTAGGGCCTTGGTCCATCGTCATTCGGATAAACTCACTGTGGAGACACTTAGAGCTGGAAACAAAGGATA TGGCGCTGAGGTTCCGGTGGTTACTTATTGCAAGCGGAAAAAAGAGAATGATGAGAGATTGAAGCTTCGGATACTTCTTA GTTTTGGGCAGCATGGAAGGGAGCTGATTACCACAGAACTTGCTTTAAGGATTTTGTCTATTCTAAGTGAAGAACAATTT CTACCCGGCATGGATCAAGCTTCCTTAAACAGTACACTTGACAAGCTAGTCATAAAAGTAGTTCCGATGGAAAACTGGAA TGGCCGCAAACTTGTTGAGGCTGGAGATCTTTGCGAGAGAAGAAATGGCAGAGGAGTTGATCTCAACCGGAACTGGAGTG TAGACTGGGGAAAAAAGGAGAAGGATTATGATCCTTATGAGGAGAATCCTGGACTCGCTCCATTTAGCGAGCCTGAAAGT CAACTTATGCGGAATCTTGCGATATCTTTTCAACCGCATATATGGGTCAATGTGCACTCTGGAATGGAAGCTCTTTTTAT GCCATATGATCATAAAAATAGAACACCTGATGGGTTGCCATTGCAACGGATGAAGTTGTTGCTTGAAGAAGTAAACCAGC TTCATTGCCAAAAGCGTTGCATGATTGGGTCTGGAGGCGGTTCCGTAGGGTATTTTGCTCACGGGACTGCAACAGATTTC ATGTACGACATCGTGAGGGTTCCCATGGCTTTCACATTTGAGATATACGGAGATGGAACAGCCTCATCAAAAGACTGTTT TAAAATGTTTAATCCAGTTGACCTTGCTAGCTACAACAGAGTTCTCAGTGACTGGTCTGCAGCATTCTTTACGATTTTTA AATTGGCACCACTTCAGCTTGGTGAGTCTGTCTTGAAGTTGGATAAGTTGGTATCAATAGATGAATATCTAGATGGGTAT TTGATGGAGAGGAGAAATAGATACGGAAAAAAGATAGAGGTGCTTGAGCTTGGAATGCAAGAAATAAGAACGTATTTCAG GCTCTTTTTACTATCTTCAGTTTTACTATTGTTCATGTTTTGTTCTAGAATTTCAAAAAGTAAGTGTAGACCAATTGTTG CTGCTATGCCCCTATAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0435600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEEIRALVHRHSDKLTVETLRAGNKGYGAEVPVVTYCKRKKENDERLKLRILLSFGQHGRELITTELALRILSILSEEQF LPGMDQASLNSTLDKLVIKVVPMENWNGRKLVEAGDLCERRNGRGVDLNRNWSVDWGKKEKDYDPYEENPGLAPFSEPES QLMRNLAISFQPHIWVNVHSGMEALFMPYDHKNRTPDGLPLQRMKLLLEEVNQLHCQKRCMIGSGGGSVGYFAHGTATDF MYDIVRVPMAFTFEIYGDGTASSKDCFKMFNPVDLASYNRVLSDWSAAFFTIFKLAPLQLGESVLKLDKLVSIDEYLDGY LMERRNRYGKKIEVLELGMQEIRTYFRLFLLSSVLLLFMFCSRISKSKCRPIVAAMPL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00631
1 265 265 9.6E-31
IPR000834
Phobius
NON_CYTOPLASMIC_DOMAIN
1 343 343 - –
Gene3D
G3DSA:3.40.630.10
1 274 274 3.2E-48 –
PANTHER
PTHR11705:SF119
1 373 373 5.6E-165 –
PANTHER
PTHR11705
1 373 373 5.6E-165 –
SUPERFAMILY
SSF53187
3 296 294 7.94E-48 –
Pfam
PF00246
39 268 230 2.3E-24
IPR000834
CDD
cd06227
48 270 223 9.92908E-109 –
Phobius
TRANSMEMBRANE
344 361 18 - –
TMHMM
TMhelix
344 361 18 - –
Phobius
CYTOPLASMIC_DOMAIN
362 378 17 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004181
Molecular function Metallocarboxypeptidase activity Catalysis of the hydrolysis of C-terminal amino acid residues from a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
Subterm of
GO:0006508
Biological process Proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0435600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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