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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0439400 |
| Transcript ID | LotjaGi1g1v0439400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phosphoglucan, water dikinase, chloroplastic; TAIR: AT5G01260.1 Carbohydrate-binding-like fold; Swiss-Prot: sp|P04830|CDGT1_PAEMA Cyclomaltodextrin glucanotransferase; TrEMBL-Plants: tr|A0A0B2SVU5|A0A0B2SVU5_GLYSO Alpha-amylase; Found in the gene: LotjaGi1g1v0439400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:93541645..93544507) extracted from Lotus japonicus Gifu genome v1.2.
CACAAATCGTAACTAAGTTAACTAATTAAGGAACAACATAGATCATTCATTATATTTCTTATAATTGTGACTGTGACCAA GAGTGATGGAAGCACTCACTAGCTCTTGCTATTCAATGGCCATTGTTGACATGCTAGGATCTCACTCTCCTAGAACTTCT GCTTATGTTTCCAACAGATCAGAAATGTTGCTATCCCCAAATCACCAGAAAGGCTCCAACTTTCAGTTCCTCAAATTGGC ACAAAACAAGCGCATTTACCCTGTTCATGCTCTGCCAGCCAAAACCCAGGTCTCTTTTTTTCCTTTTTCCACCTTCAATT TCCCATTGCTTTGATTATGACATGCTTCAATTGCCTAATATTAGACCCTTCAATAACCTTTTACAAGATAGTTTTATACC AAAATCCATTGTTGGATTCATCATGATCATGATATGCTAAGATGAAACTAATATCTTATGTACTTGTTTGGTGTCTCTTT CTCTATCTCATCAATAAAATTATGTTATGAAAATTAAAATAGAAAATAAATATGAGACTTATAACATTACATGAGTAATT TTTAATTTACATGCCACAATCTATTGGAATCTATTGGTGGGATGGACAGAAAATTTAGATTTCTATGTGCTAAGATGATA CCTGTTAGTAATATAATATGAAACTTTTAACCAATAACTTCAGTTTTTTATATAATTGGTTTGTGACATGGTATAAGAGC CTCTTTATGATAAAGTGATTTAGAGTTCGATCATTATTGTCTATAATTCTTATAAGAAAAAAAGTTAAATTTCAACACAT GATAGATGAACTTGTGCATTATCCATACTTCAAGTCCAAGTGAACTCTTGTGGAAAGAGACGTGTTAAAAATATAATATA AAATCATTCATATAACTTTTACTTTTTGAGATGTTTACAATAAGGCGGCCTTACAATAATAACTCTAAGATTTTACATTA ATCTAAAATATTTTAGTGTGCATGATAAATTGTAGGTGGACTTGGACTTGGACATAGAGATGGACATGGACATGGACACC GGGGATGTTCAAGCTCAACAAGCAAGTGGGTTCTAGAAACCTCATAGGATCTTCCTACAAATTATTCTATAACTACAAAA TTCTAAAACACCAATTTGTTGTGCAGTGGCACCCAAGTTTATTCATGTCAAATTTCAGCTCCAACGCAACTGTAATTTTG GGGAACAATTTCTGATGGTTGGAGATGATCCTGTGTTTGGTTCATGGGACCCTTCAAAGGCATTACCAATGACCTGGTCA GATGGGCATGTTTGGACTGTAGAGCAGGTGAGTAGTATCAATACTATCTTGTCAAAATATGAAATTTTTGTTTATTGTAA GCACCATCAGATTTCAAATATGTGGACAATTTAATTTTTTAATTAATTTAGGGTTAAATATATTTTTGTCCCTAAAAAAT AATCAATTATTACTTTTGATCCCTTAAATTTTTTTTAAATATATCCTTAATTTTTATAAATACACAGGTTTGAGTCACTA AAAGACCAATACCTAAAGAAAATTCATTTCAAATGACAATTTCTTTCGTAATTTTTTTTCTAAAGCAAAATTTTATTGAT ATTAAAGCATTGAGATACAAAGCCTCTCAAAAAAAGTTCAAACCCGGAAAAAACCTAAAAGAGTCTACCACATAGAGAAA GACCAAAACACAAAAACCTAAATGCGGTAAAAAAAAGCATAAAACAGAGAGGCTTTAGTAATTTTCCGTTCTTAAAATTG TATTTTAAATACTTGAAATTTAGTTTTAGTCCCACTCAAAGACTCAAACATATGTATTTCAAATAATTGAGGATTTATTT CTCAAAAGAAAAAAATTTAGAGGTACCAAAACCAATAATTCTCTATTTTGTTGGGATAGAAACATGGTTTTGGTTATAGA GAAAAAGTTTGATGCACCGACGGTGTAAAGTTTTTTTACACCGTCAACCAATCAGATTTCAAGGATGTGAGAAAATCTCT CTTTTCATTTAATTTCTTTAACTGACATGTCACATCCTTGAAATCTGATTGGTTGACGGTGTAAAAAAACTTTACACCGT CGGTGCATCAAAATTAAACTCTTGGTTATAACCGTTGTGCATGTGCCTTTTTCTCAACATCTTAAATGATGTTAATTATA TATACTTTCCCTTAATGCAATGATCAGAACATTCCTGCTGGGAAGTCAATCCAATTCAAATTCATCCTGAAAAGAAAAGG AGGTGAAGTTTATTGGCAGCCAGGGTCAGATAGAACTCTGCACACTTGGGAAAACATGAACAGAATCACTATTTGTGAGG ATTGGGAGAATGCTCAGCTTCAGAAGATAATTGAGGAAGGTCAACCTACAGCTTCCCCAAGCTCAATTAATCTTGCTAAA AACAATAATGCAATGGAGATGGCGGCGACGCCGCTTGCTAGTAACATTCCATCTCAAATGATGGAGCCTGTGACAACCAT TGTAGCTGAGAATGTAGCTTCCTCTAATGAGCACATCAAGACTACAACCAGCACCAAGACTAAAAAGAACATGATCCCCT TGAATGCTGCAAATGTCTCTGATCTCACTCACAAGGGAAAATTTGCCAATAGTCCATGAACATTTGATTTGGATGTTTTC AAATTAAGGGGTCAGAACATGCCAGAGAGAGTGAAATTCTTTTTTTTTTTCCATCCTAGTGAATTTGCTTGATTATATTT TCTTACAAGCACAACAAATTTTGAGTATATAGCATTGCCATTCGGTTGTGGGTATACCTACCAATTAGGCAATGAATAAG TATATTTCTACTTATGTATCGTCATTTATGTTCATCAATGAAATCAATTTTGGTCGTATCTCC
CDS sequence (LotjaGi1g1v0439400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCACTCACTAGCTCTTGCTATTCAATGGCCATTGTTGACATGCTAGGATCTCACTCTCCTAGAACTTCTGCTTA TGTTTCCAACAGATCAGAAATGTTGCTATCCCCAAATCACCAGAAAGGCTCCAACTTTCAGTTCCTCAAATTGGCACAAA ACAAGCGCATTTACCCTGTTCATGCTCTGCCAGCCAAAACCCAGGTGGACTTGGACTTGGACATAGAGATGGACATGGAC ATGGACACCGGGGATGTTCAAGCTCAACAAGCAATGGCACCCAAGTTTATTCATGTCAAATTTCAGCTCCAACGCAACTG TAATTTTGGGGAACAATTTCTGATGGTTGGAGATGATCCTGTGTTTGGTTCATGGGACCCTTCAAAGGCATTACCAATGA CCTGGTCAGATGGGCATGTTTGGACTGTAGAGCAGAACATTCCTGCTGGGAAGTCAATCCAATTCAAATTCATCCTGAAA AGAAAAGGAGGTGAAGTTTATTGGCAGCCAGGGTCAGATAGAACTCTGCACACTTGGGAAAACATGAACAGAATCACTAT TTGTGAGGATTGGGAGAATGCTCAGCTTCAGAAGATAATTGAGGAAGGTCAACCTACAGCTTCCCCAAGCTCAATTAATC TTGCTAAAAACAATAATGCAATGGAGATGGCGGCGACGCCGCTTGCTAGTAACATTCCATCTCAAATGATGGAGCCTGTG ACAACCATTGTAGCTGAGAATGTAGCTTCCTCTAATGAGCACATCAAGACTACAACCAGCACCAAGACTAAAAAGAACAT GATCCCCTTGAATGCTGCAAATGTCTCTGATCTCACTCACAAGGGAAAATTTGCCAATAGTCCATGA
Protein sequence (LotjaGi1g1v0439400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEALTSSCYSMAIVDMLGSHSPRTSAYVSNRSEMLLSPNHQKGSNFQFLKLAQNKRIYPVHALPAKTQVDLDLDIEMDMD MDTGDVQAQQAMAPKFIHVKFQLQRNCNFGEQFLMVGDDPVFGSWDPSKALPMTWSDGHVWTVEQNIPAGKSIQFKFILK RKGGEVYWQPGSDRTLHTWENMNRITICEDWENAQLQKIIEEGQPTASPSSINLAKNNNAMEMAATPLASNIPSQMMEPV TTIVAENVASSNEHIKTTTSTKTKKNMIPLNAANVSDLTHKGKFANSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 264 | 264 | 1.1E-76 | – | |
| PANTHER | 1 | 264 | 264 | 1.1E-76 | – | |
| ProSiteProfiles | 91 | 193 | 103 | 19.129 | ||
| Gene3D | 94 | 192 | 99 | 6.1E-28 | ||
| SUPERFAMILY | 94 | 188 | 95 | 5.4E-26 | ||
| SMART | 96 | 188 | 93 | 1.8E-17 | ||
| Pfam | 97 | 184 | 88 | 2.0E-19 | ||
| CDD | 99 | 191 | 93 | 1.06298E-31 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Carbohydrate binding | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. | ||
| Molecular function | Starch binding | Interacting selectively and non-covalently with starch. |
Expression pattern of LotjaGi1g1v0439400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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