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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR013784
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We have found 37 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.084s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0021379.1
n.a. Alpha-amylase [Medicago truncatula] gi|357468733|ref|XP_003604651.1| chr0 8689319 8693960 +
2 domain predictions
1 GO term
Lj0g3v0234519.1
n.a. PREDICTED: rhamnogalacturonate lyase B-like [Cicer arietinum] gi|502131870|ref|XP_004501130.1| chr0 121480595 121485890 -
2 domain predictions
1 GO term
Lj0g3v0234519.2
n.a. PREDICTED: rhamnogalacturonate lyase B-like [Glycine max] gi|356507989|ref|XP_003522745.1| chr0 121480595 121485890 -
2 domain predictions
1 GO term
Lj0g3v0286339.1
n.a. Rhamnogalacturonate lyase [Medicago truncatula] gi|357517183|ref|XP_003628880.1| chr0 148752705 148755241 +
2 domain predictions
1 GO term
Lj0g3v0307599.1
n.a. Rhamnogalacturonate lyase [Medicago truncatula] gi|357517173|ref|XP_003628875.1| chr0 160564200 160572746 +
2 domain predictions
1 GO term
Lj0g3v0307599.2
n.a. Rhamnogalacturonate lyase [Medicago truncatula] gi|357517173|ref|XP_003628875.1| chr0 160564200 160572746 +
2 domain predictions
1 GO term
Lj1g3v0178890.1
n.a. PREDICTED: rhamnogalacturonate lyase B-like [Glycine max] gi|356500777|ref|XP_003519207.1| chr1 2036769 2041753 +
2 domain predictions
1 GO term
Lj1g3v1601160.1
n.a. PREDICTED: rhamnogalacturonate lyase-like [Glycine max] gi|356515683|ref|XP_003526528.1| chr1 19202530 19208031 -
2 domain predictions
1 GO term
Lj1g3v1601160.2
n.a. PREDICTED: rhamnogalacturonate lyase-like [Glycine max] gi|356515683|ref|XP_003526528.1| chr1 19202530 19208031 -
2 domain predictions
1 GO term
Lj1g3v1856390.1
n.a. PREDICTED: UPF0480 protein At4g32130-like [Glycine max] gi|356507608|ref|XP_003522556.1| chr1 22467691 22471002 -
2 domain predictions
1 GO term
Lj1g3v4081830.1
n.a. PREDICTED: 4-alpha-glucanotransferase DPE2-like isoform X1 [Cicer arietinum] gi|502107608|ref|XP_004493318.1| chr1 48198486 48208191 +
2 domain predictions
1 GO term
Lj1g3v4848430.1
n.a. PREDICTED: nodal modulator 1-like [Cicer arietinum] gi|502112755|ref|XP_004494433.1| chr1 58688202 58699960 -
2 domain predictions
1 GO term
Lj5g3v2302970.1
n.a. PREDICTED: phosphoglucan, water dikinase, chloroplastic-like isoform X2 [Cicer arietinum] gi|502121720|ref|XP_004497422.1| chr5 34168030 34186065 -
2 domain predictions
1 GO term
Lj5g3v2302970.2
n.a. PREDICTED: phosphoglucan, water dikinase, chloroplastic-like isoform X2 [Cicer arietinum] gi|502121720|ref|XP_004497422.1| chr5 34168030 34186065 -
2 domain predictions
1 GO term
LotjaGi1g1v0117500.1
n.a. 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase; TAIR: AT1G07110.1 fructose-2,6-bisphosphatase; Swiss-Prot: sp|Q9MB58|F26_ARATH 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase; TrEMBL-Plants: tr|K7M821|K7M821_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0117500 LjG1.1_chr1 18468331 18480800 -
2 domain predictions
1 GO term
LotjaGi1g1v0125400.1
n.a. Ribonuclease E/G family protein; TAIR: AT2G04270.1 RNAse E/G-like protein; Swiss-Prot: sp|F4IV66|RNE_ARATH Ribonuclease E/G-like protein, chloroplastic; TrEMBL-Plants: tr|I1MB77|I1MB77_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0125400 LjG1.1_chr1 19791651 19803965 +
2 domain predictions
1 GO term
LotjaGi1g1v0125400.2
n.a. Ribonuclease E/G family protein; TAIR: AT2G04270.1 RNAse E/G-like protein; Swiss-Prot: sp|F4IV66|RNE_ARATH Ribonuclease E/G-like protein, chloroplastic; TrEMBL-Plants: tr|A0A0B2S438|A0A0B2S438_GLYSO Ribonuclease E; Found in the gene: LotjaGi1g1v0125400 LjG1.1_chr1 19792643 19802589 +
2 domain predictions
1 GO term
LotjaGi1g1v0134900.2
n.a. Rhamnogalacturonate lyase; TAIR: AT1G09890.4 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|A0A0R0L4I6|A0A0R0L4I6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0134900 LjG1.1_chr1 21739204 21754145 +
2 domain predictions
1 GO term
LotjaGi1g1v0134900.4
n.a. Rhamnogalacturonate lyase; TAIR: AT1G09890.4 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|I1JH21|I1JH21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0134900 LjG1.1_chr1 21747835 21752816 +
2 domain predictions
1 GO term
LotjaGi1g1v0381600.1
n.a. Er membrane protein complex subunit 7-like protein; TAIR: AT2G25310.1 ER membrane protein complex subunit-like protein (DUF2012); Swiss-Prot: sp|Q8VY97|Y4213_ARATH ER membrane protein complex subunit 7 homolog; TrEMBL-Plants: tr|I3S1N4|I3S1N4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0381600 LjG1.1_chr1 86457019 86460929 -
2 domain predictions
1 GO term
LotjaGi1g1v0415400.1
n.a. Rhamnogalacturonate lyase; TAIR: AT1G09890.4 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|K7KJ17|K7KJ17_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0415400 LjG1.1_chr1 90818512 90823814 -
2 domain predictions
1 GO term
LotjaGi1g1v0415600.1
n.a. Rhamnogalacturonate lyase; TAIR: AT1G09890.4 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|I1JV26|I1JV26_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0415600 LjG1.1_chr1 90846267 90850600 -
2 domain predictions
1 GO term
LotjaGi1g1v0415700.1
n.a. Rhamnogalacturonate lyase; TAIR: AT1G09910.1 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|K7KU45|K7KU45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0415700 LjG1.1_chr1 90850818 90856839 -
2 domain predictions
1 GO term
LotjaGi1g1v0415700.2
n.a. Rhamnogalacturonate lyase; TAIR: AT1G09910.1 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|K7KU45|K7KU45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0415700 LjG1.1_chr1 90851377 90856406 -
2 domain predictions
1 GO term
LotjaGi1g1v0439400.1
n.a. Phosphoglucan, water dikinase, chloroplastic; TAIR: AT5G01260.1 Carbohydrate-binding-like fold; Swiss-Prot: sp|P04830|CDGT1_PAEMA Cyclomaltodextrin glucanotransferase; TrEMBL-Plants: tr|A0A0B2SVU5|A0A0B2SVU5_GLYSO Alpha-amylase; Found in the gene: LotjaGi1g1v0439400 LjG1.1_chr1 93541645 93544507 +
2 domain predictions
1 GO term
LotjaGi1g1v0657200.1
n.a. 4-alpha-glucanotransferase; TAIR: AT2G40840.1 disproportionating enzyme 2; Swiss-Prot: sp|Q8RXD9|DPE2_ARATH 4-alpha-glucanotransferase DPE2; TrEMBL-Plants: tr|G7L4U3|G7L4U3_MEDTR 4-alpha-glucanotransferase DPE2; Found in the gene: LotjaGi1g1v0657200 LjG1.1_chr1 121731183 121740869 +
2 domain predictions
1 GO term
LotjaGi1g1v0758800.1
n.a. Carbohydrate-binding-like fold protein; TAIR: AT3G62360.2 Carbohydrate-binding-like fold; Swiss-Prot: sp|Q6GQT9|NOMO1_MOUSE Nodal modulator 1; TrEMBL-Plants: tr|G7KTM5|G7KTM5_MEDTR Carbohydrate-binding-like fold protein; Found in the gene: LotjaGi1g1v0758800 LjG1.1_chr1 133212386 133225378 -
2 domain predictions
1 GO term
LotjaGi2g1v0329700.1
n.a. Rhamnogalacturonate lyase; TAIR: AT2G22620.1 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|I1J4Y6|I1J4Y6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0329700 LjG1.1_chr2 80515663 80521060 -
2 domain predictions
1 GO term
LotjaGi3g1v0210300.1
n.a. Phosphoglucan, water dikinase, chloroplastic; TAIR: AT5G01260.2 Carbohydrate-binding-like fold; Swiss-Prot: sp|P31797|CDGT_GEOSE Cyclomaltodextrin glucanotransferase; TrEMBL-Plants: tr|G7JN22|G7JN22_MEDTR Starch-binding domain protein; Found in the gene: LotjaGi3g1v0210300 LjG1.1_chr3 31314185 31319509 -
2 domain predictions
1 GO term
LotjaGi4g1v0172800.1
n.a. Rhamnogalacturonate lyase; TAIR: AT2G22620.1 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|K7MSC9|K7MSC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0172800 LjG1.1_chr4 34335828 34375180 +
2 domain predictions
1 GO term
LotjaGi4g1v0172800.2
n.a. Rhamnogalacturonate lyase; TAIR: AT2G22620.1 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|K7MSC9|K7MSC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0172800 LjG1.1_chr4 34365846 34375168 +
2 domain predictions
1 GO term
LotjaGi4g1v0173000.1
n.a. Rhamnogalacturonate lyase; TAIR: AT2G22620.1 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|K7MSC9|K7MSC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0173000 LjG1.1_chr4 34427714 34436960 +
2 domain predictions
1 GO term
LotjaGi5g1v0365700.1
n.a. Phosphoglucan, water dikinase; TAIR: AT5G26570.1 chloroplastidic phosphoglucan, water dikinase (ATGWD3); Swiss-Prot: sp|Q6ZY51|PWD_ARATH Phosphoglucan, water dikinase, chloroplastic; TrEMBL-Plants: tr|A0A151U892|A0A151U892_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0365700 LjG1.1_chr5 68036322 68051230 -
2 domain predictions
1 GO term
LotjaGi5g1v0365700.2
n.a. Phosphoglucan, water dikinase; TAIR: AT5G26570.1 chloroplastidic phosphoglucan, water dikinase (ATGWD3); Swiss-Prot: sp|Q6ZY51|PWD_ARATH Phosphoglucan, water dikinase, chloroplastic; TrEMBL-Plants: tr|A0A072UBU6|A0A072UBU6_MEDTR Phosphoglucan, water dikinase; Found in the gene: LotjaGi5g1v0365700 LjG1.1_chr5 68036729 68051157 -
2 domain predictions
1 GO term
LotjaGi6g1v0115600.1
n.a. 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase; TAIR: AT1G07110.1 fructose-2,6-bisphosphatase; Swiss-Prot: sp|Q9MB58|F26_ARATH 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase; TrEMBL-Plants: tr|I1LLN3|I1LLN3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0115600 LjG1.1_chr6 29052648 29076251 -
2 domain predictions
1 GO term
LotjaGi6g1v0115600.2
n.a. 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase; TAIR: AT1G07110.1 fructose-2,6-bisphosphatase; Swiss-Prot: sp|Q9MB58|F26_ARATH 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase; TrEMBL-Plants: tr|I1LLN3|I1LLN3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0115600 LjG1.1_chr6 29052662 29076185 -
2 domain predictions
1 GO term
LotjaGi6g1v0115600.5
n.a. 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase; TAIR: AT1G07110.1 fructose-2,6-bisphosphatase; Swiss-Prot: sp|Q9MB58|F26_ARATH 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase; TrEMBL-Plants: tr|I1LLN3|I1LLN3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0115600 LjG1.1_chr6 29053007 29076014 -
2 domain predictions
1 GO term