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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0442600 |
Transcript ID | LotjaGi1g1v0442600.5 |
Related isoforms 5 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Acyl-CoA dehydrogenase; TAIR: AT3G51840.1 acyl-CoA oxidase 4; Swiss-Prot: sp|Q96329|ACOX4_ARATH Acyl-coenzyme A oxidase 4, peroxisomal; TrEMBL-Plants: tr|A0A072U1Y7|A0A072U1Y7_MEDTR Acyl-CoA dehydrogenase; Found in the gene: LotjaGi1g1v0442600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:93987196..93991462) extracted from Lotus japonicus Gifu genome v1.2.
TCTTTTATAAAAAAATATTCTCCTGACTCTAAATCTCATGTTTTAAGCAGTACTGGGAGAAGGCCAATTTCCCATTTCAT GTCATTCCGAAGTTTGCTGAACTGCATATTGCTGGTGGCACAATCAAGGTGAGCTATTAACATAATTTCCCATTTATTTT GTCTTAGTTAGTTGTAAGACAGTGCAAAAGGAGTTCTTAGCTTCCTCTGACTGATTCTCAGGGTTATGGTTGTCCTGGTC TTTCCATGCTTGGGAGTGCTGTTGCTGCAGCAGAAATTGCTAGAGTTGATGCAAGCTTTTCAGTTTTCATTTTGGTCCAT TCATGCTTGGCAATGCTCACCATTGGTAATATCCTTGTTTGTAATAATCTCTGAATGCAACTGTTTTTCTAATAGGTTAA TAGCTATTCATAGTTTCTGATATTTTACATCTTTGATTGACTGCCAAGTATAGCATTGTGTGGATCTGAAGCTCAGAAGC AAAAGTACCTACCTTCTTTGGCAGAGCTAAAAACTATATCATGTTGGGTAAGTGAGTCACCTTCCTTGGATTTGAAAGAT ATGCATCATGTTGCTGAAGTTCCACTTCTCAAAGAGGTTATTTTCTTTTGGTTAGGCTTTGACTGAACCTGATTATGGAA GTGATGCCAGTTCTTTGAAGACCACAGCAACCAAGGTTCATTGTCTAATGTGTCTTACCTACTATTTACTTCTCTAGCAA GTTGCATTTTGCTTTTTTATGAATTATTTATCATTTTACTCATGTAACTTTCACTATGCTCAACGGTACCAATGTTCCGT AATGCATTCTTGCTTTGCATTGAAACTAATCAGGTGGAAGGTGGTTGGATCCTTGAGGGCCAAAAGAGGTGGATAGGAAA CAGTACATTTGCTGATTTGTTGGTTATCTTCGCCAGGAATACCACAACAAATCAAATAAATGGGTATGCAATGTGTACCA ACTTCGCTTATTGTTAAATCCTTATATATAAGCATGTCTGTATGTGGATTATTTGTATTGTAGCACATGTAAAGGCCATG GAGATACAAATCTCCATGATGTTTCATGGACCGCCTTACCCCAAAAAGAAAATAGAAATGAATGCAATGATTAACATGGA CGTGAATGTTCGATCTTTTTATATAGTAGTTTTTCACCCTGTGTATGTTCATTACTTCACCAGAATATAGCCTAGCCCTA GAATAACATTACAATGGAACATTTAGCGCTTGTTTAGTTTGATAACATTGTTTATGTTTTTACTGTTTAACTAATAATCA CAAAGTTACCACTTTGTTTTGACCTTTTCTGTAATTATTAGTGAAAATGGAAAACATCTTTCTCAAACTGAACACACTCT TAGGATTCTAGATTGTTTCTTCATATATATTTTCTTCACTTAACTTTTATATTCCTGGATGCTTTCATGTCCTGCTTCAC AAGTACTGTATTTATTTACCTTTTTCTTATGCATATTATTTCAGCTATATTGTAAAAAAAGATGCACCTGGTTTAACAGC CACAAAAATAGAGAATAAAATTGGACTTAGGATCGTACAAAATGGAGACATTGTTTTGAAGAAACTTTTTGTCCCTGATG AGGATAGAATAGCAGAACTCAATTCTTTTCAAGACACAAACAAGGTAAATTTGTACGGTGCTTTCGTTCTCAGGAATTAT TGTGTGATTTTATCATTTTCAACAAAAAATTACTGTAAACATCTTGTTGTTCATATAACAGAAATTACTTGATGAAGTAG TAGAGCTTTTATCAATTCTGGTTCCTGTGTCCTCTTAGAGCCTTTGTAGGACTGATAGGACACAACTTCTGAATTGAACA GGAAATTTTACTGAATTCAAACAGGTAAGCTTCTGAAGAAAAGATCCAGTGCCAAGGCTCCTACAGAGAATATTTTTACA GGGAATATTTCCCTGCTCTAAGATTCACACTTCACACCCCCTTACTTCCCTATACTACAACATATAGATAGATAGATAGA AACATAACTTACTCTGATTATGTAGCTGTGTGTTAATTATTCAAAGGGAGAGTTTTGTCACTGTAATGGTTCCACCCGAC TCGATCAGAATTGCTTCCTCTGAAGGATAGCCTATAGTTGGAGGACCTGCCCCAGAGAAATTTTTTTCTTAATAGAATGG TATTTAATAAATAGTGTATTTACCTCCTCAATATTTTTATAGTATCTAATTCAATAAGCTATTGTTTATTTTGCTAAATA TGTGTTTAGTTTTCGCCCTGTTAACTAACTCTTCCCTCTCTCAGTAACTGTGCTACACAGCAGTTCCTTAACTCACCCCC CTACATGGCAGTTCCTTAGGTCACCTTGCGGTTCTTTCTGGGTTTGACCTTCCAAATAGTTGTTTGAATGGAGTTGGACT TGGATCTAGCAACTGATCCTCCTCCAACCCAACATACTCCTTGGCTCAATCAGATTCTGCATGTCTTAGGTTATGAATAA GATCAGCATTTGTCTGGTTCTACCACTATCCATTTATTGCTAGTGCACTTAAAGGCTATTAGCATTCCAACCAGTTGAAT ATGCCACACTCAAATACTGTCACATCTGCTTCTGAAAAACGAGAACATTCTAATTTTCTTTTCCCATGTCTTTGTATTAG TTCATTATTCTCTATCCAATTCTTGGTTACTTCATCATTATAACTTTGTATTTATAATTTACATGTTGTATACTTATTTT TTGCTATCTTAAAACAGGTACTTGCTGCTTCTCGTGTAATGGTTTGCTGGCAGCCAATTGGTGTATCAATGGGCATCTAT GATATGTGTCATAGGTATTCTTATATAGCATGCTAATAGTATGCTTCAACCAAAGCTTTCACTGAAAACCATGCTGAAAA TTCTATGTCATTAAAAGGTACCTTAAGGAAAGGAAACAGTTTGGAGCACCATTAGCAGCTTTCCAAATCAACCAACAGAA ACTTGTTCAAATGCTTGGTAACGTTCAAGCAATGGTTCTTGTTGGTTGGCGCCTGTGTAAGTTGTATGAGAGTGGTAAAC TGACGCCGGGTCATGCTAGCTTGGGGAAGGTAACTCATAACCTATCCACATTTATAATCATACTATACTCACAAAATAAA AGAAAAGAAAACCCCAGAAAGTTTCTGACCAGTTTACCTTCATTGATTTAATGATCGGTTCGGTTTTTAAAATACTGGTA TGTGGTACTGGTAGATAACTTACAATAATTTGTCATCATTTTTCAGTCGTGGATCTCCTTGAGGGCAAGAGAAACAGCTG CCCTGGGGCGAGAGTTGCTTGGTGGCAATGGAATTTTGGCTGATTATCTTGTGGCAAAGGTTCTCATGCCTAATTCCTAA TTTAGTAATTTAACTTCAGCAGATATTGATACTACATTTCCAAAGTTCTTACCAAAACCCAATGGGTGTCGGTCCTTGTG ATTAAAACTTAGAGTTGGTTGATAGAAACCATAAGTCGAAAGTTAGATTCTTACTTCTTAGGAGTCGTATTCTTGAGGGT CTTCACTACATTATCACTACATTAAGGTTGGAATTACAAGAACAATTTAGGACATCAAAAGAAGTCCTGACCTAGAAGAA AGGCCCAACTGTGAAATTTTATTAAACCAAATGGATGCTGCTAGTGATCTCTTCATTCTAACTATGTACAAACCCTGCAT GGGTTCTATTCCAATAGATTTGGATTTTTTTTTAAAACGAGATGGAAATGGGGGCCCAAGTGTATATCTTATGATACTTC TTTGATTATTATTTAGTATAGTAGTGATGTGGTGATTTCAATCATATCTATAGAAATTGCTCAATTTCCTAAGAGTCTAT GACCTAACTCATGCAAAGTGCCTATCTTAACCACAGCATAACCTCCGGCTTACTTCTTGTGACTTCACTGTTTTTGTTGA TGAAGGCTCTGTTGGGCTATGATTAAACCAAAACTCAATTGAAGTTTAAGCTCACAGAACATGATTATTACCAGACATCA GATTAAAACTTCTATACTTTTCCAGAGATTGGCCTCATTAGTCTACTTTGTTTTTATTGACATTGTTCATAGATTGGGAC ATTTTGTTTACTGACAGTGACATGTTTTTAACTTTTATGCTTTTATTCTCTATTGTTGCAGGCATTTTGTGACTTAGAAC CGATCTATACCTTTGAAGGAACCTATGACATCAACACCTTGGTCACAGGTAGGGAAGTTACTGGTTTTGCAAGCTTTAAG CCGGCTGCTCAAAGAAGTAGAATGTGA
CDS sequence (LotjaGi1g1v0442600.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGGGAGTGCTGTTGCTGCAGCAGAAATTGCTAGAGTTGATGCAAGCTTTTCAGTTTTCATTTTGGTCCATTCATG CTTGGCAATGCTCACCATTGCATTGTGTGGATCTGAAGCTCAGAAGCAAAAGTACCTACCTTCTTTGGCAGAGCTAAAAA CTATATCATGTTGGGCTTTGACTGAACCTGATTATGGAAGTGATGCCAGTTCTTTGAAGACCACAGCAACCAAGGTGGAA GGTGGTTGGATCCTTGAGGGCCAAAAGAGGTGGATAGGAAACAGTACATTTGCTGATTTGTTGGTTATCTTCGCCAGGAA TACCACAACAAATCAAATAAATGGCTATATTGTAAAAAAAGATGCACCTGGTTTAACAGCCACAAAAATAGAGAATAAAA TTGGACTTAGGATCGTACAAAATGGAGACATTGTTTTGAAGAAACTTTTTGTCCCTGATGAGGATAGAATAGCAGAACTC AATTCTTTTCAAGACACAAACAAGGTACTTGCTGCTTCTCGTGTAATGGTTTGCTGGCAGCCAATTGGTGTATCAATGGG CATCTATGATATGTGTCATAGGTACCTTAAGGAAAGGAAACAGTTTGGAGCACCATTAGCAGCTTTCCAAATCAACCAAC AGAAACTTGTTCAAATGCTTGGTAACGTTCAAGCAATGGTTCTTGTTGGTTGGCGCCTGTGTAAGTTGTATGAGAGTGGT AAACTGACGCCGGGTCATGCTAGCTTGGGGAAGTCGTGGATCTCCTTGAGGGCAAGAGAAACAGCTGCCCTGGGGCGAGA GTTGCTTGGTGGCAATGGAATTTTGGCTGATTATCTTGTGGCAAAGGCATTTTGTGACTTAGAACCGATCTATACCTTTG AAGGAACCTATGACATCAACACCTTGGTCACAGGTAGGGAAGTTACTGGTTTTGCAAGCTTTAAGCCGGCTGCTCAAAGA AGTAGAATGTGA
Protein sequence (LotjaGi1g1v0442600.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGSAVAAAEIARVDASFSVFILVHSCLAMLTIALCGSEAQKQKYLPSLAELKTISCWALTEPDYGSDASSLKTTATKVE GGWILEGQKRWIGNSTFADLLVIFARNTTTNQINGYIVKKDAPGLTATKIENKIGLRIVQNGDIVLKKLFVPDEDRIAEL NSFQDTNKVLAASRVMVCWQPIGVSMGIYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNVQAMVLVGWRLCKLYESG KLTPGHASLGKSWISLRARETAALGRELLGGNGILADYLVAKAFCDLEPIYTFEGTYDINTLVTGREVTGFASFKPAAQR SRM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 55 | 55 | 4.8E-12 | ||
Phobius | 1 | 15 | 15 | - | – | |
Pfam | 2 | 51 | 50 | 9.2E-11 | ||
PANTHER | 2 | 321 | 320 | 2.1E-199 | – | |
PANTHER | 2 | 321 | 320 | 2.1E-199 | – | |
SUPERFAMILY | 4 | 161 | 158 | 3.27E-47 | ||
Phobius | 16 | 36 | 21 | - | – | |
Phobius | 37 | 323 | 287 | - | – | |
Gene3D | 56 | 162 | 107 | 4.8E-32 | – | |
Pfam | 57 | 148 | 92 | 2.4E-22 | ||
Gene3D | 163 | 323 | 161 | 7.1E-39 | – | |
SUPERFAMILY | 166 | 311 | 146 | 3.22E-33 | ||
Pfam | 167 | 307 | 141 | 3.9E-23 | ||
ProSitePatterns | 267 | 286 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Acyl-CoA dehydrogenase activity | Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor. | ||
Molecular function | Oxidoreductase activity, acting on the CH-CH group of donors | Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. | ||
Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. | ||
Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi1g1v0442600.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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