Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0442600 |
| Transcript ID | LotjaGi1g1v0442600.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Acyl-CoA dehydrogenase; TAIR: AT3G51840.1 acyl-CoA oxidase 4; Swiss-Prot: sp|Q96329|ACOX4_ARATH Acyl-coenzyme A oxidase 4, peroxisomal; TrEMBL-Plants: tr|A0A072U1Y7|A0A072U1Y7_MEDTR Acyl-CoA dehydrogenase; Found in the gene: LotjaGi1g1v0442600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:93987347..93991462) extracted from Lotus japonicus Gifu genome v1.2.
ATTTATTTTGTCTTAGTTAGTTGTAAGACAGTGCAAAAGGAGTTCTTAGCTTCCTCTGACTGATTCTCAGGGTTATGGTT GTCCTGGTCTTTCCATGCTTGGGAGTGCTGTTGCTGCAGCAGAAATTGCTAGAGTTGATGCAAGCTTTTCAGTTTTCATT TTGGTCCATTCATGCTTGGCAATGCTCACCATTGGTAATATCCTTGTTTGTAATAATCTCTGAATGCAACTGTTTTTCTA ATAGGTTAATAGCTATTCATAGTTTCTGATATTTTACATCTTTGATTGACTGCCAAGTATAGCATTGTGTGGATCTGAAG CTCAGAAGCAAAAGTACCTACCTTCTTTGGCAGAGCTAAAAACTATATCATGTTGGGTAAGTGAGTCACCTTCCTTGGAT TTGAAAGATATGCATCATGTTGCTGAAGTTCCACTTCTCAAAGAGGTTATTTTCTTTTGGTTAGGCTTTGACTGAACCTG ATTATGGAAGTGATGCCAGTTCTTTGAAGACCACAGCAACCAAGGTTCATTGTCTAATGTGTCTTACCTACTATTTACTT CTCTAGCAAGTTGCATTTTGCTTTTTTATGAATTATTTATCATTTTACTCATGTAACTTTCACTATGCTCAACGGTACCA ATGTTCCGTAATGCATTCTTGCTTTGCATTGAAACTAATCAGGTGGAAGGTGGTTGGATCCTTGAGGGCCAAAAGAGGTG GATAGGAAACAGTACATTTGCTGATTTGTTGGTTATCTTCGCCAGGAATACCACAACAAATCAAATAAATGGGTATGCAA TGTGTACCAACTTCGCTTATTGTTAAATCCTTATATATAAGCATGTCTGTATGTGGATTATTTGTATTGTAGCACATGTA AAGGCCATGGAGATACAAATCTCCATGATGTTTCATGGACCGCCTTACCCCAAAAAGAAAATAGAAATGAATGCAATGAT TAACATGGACGTGAATGTTCGATCTTTTTATATAGTAGTTTTTCACCCTGTGTATGTTCATTACTTCACCAGAATATAGC CTAGCCCTAGAATAACATTACAATGGAACATTTAGCGCTTGTTTAGTTTGATAACATTGTTTATGTTTTTACTGTTTAAC TAATAATCACAAAGTTACCACTTTGTTTTGACCTTTTCTGTAATTATTAGTGAAAATGGAAAACATCTTTCTCAAACTGA ACACACTCTTAGGATTCTAGATTGTTTCTTCATATATATTTTCTTCACTTAACTTTTATATTCCTGGATGCTTTCATGTC CTGCTTCACAAGTACTGTATTTATTTACCTTTTTCTTATGCATATTATTTCAGCTATATTGTAAAAAAAGATGCACCTGG TTTAACAGCCACAAAAATAGAGAATAAAATTGGACTTAGGATCGTACAAAATGGAGACATTGTTTTGAAGAAACTTTTTG TCCCTGATGAGGATAGAATAGCAGAACTCAATTCTTTTCAAGACACAAACAAGGTAAATTTGTACGGTGCTTTCGTTCTC AGGAATTATTGTGTGATTTTATCATTTTCAACAAAAAATTACTGTAAACATCTTGTTGTTCATATAACAGAAATTACTTG ATGAAGTAGTAGAGCTTTTATCAATTCTGGTTCCTGTGTCCTCTTAGAGCCTTTGTAGGACTGATAGGACACAACTTCTG AATTGAACAGGAAATTTTACTGAATTCAAACAGGTAAGCTTCTGAAGAAAAGATCCAGTGCCAAGGCTCCTACAGAGAAT ATTTTTACAGGGAATATTTCCCTGCTCTAAGATTCACACTTCACACCCCCTTACTTCCCTATACTACAACATATAGATAG ATAGATAGAAACATAACTTACTCTGATTATGTAGCTGTGTGTTAATTATTCAAAGGGAGAGTTTTGTCACTGTAATGGTT CCACCCGACTCGATCAGAATTGCTTCCTCTGAAGGATAGCCTATAGTTGGAGGACCTGCCCCAGAGAAATTTTTTTCTTA ATAGAATGGTATTTAATAAATAGTGTATTTACCTCCTCAATATTTTTATAGTATCTAATTCAATAAGCTATTGTTTATTT TGCTAAATATGTGTTTAGTTTTCGCCCTGTTAACTAACTCTTCCCTCTCTCAGTAACTGTGCTACACAGCAGTTCCTTAA CTCACCCCCCTACATGGCAGTTCCTTAGGTCACCTTGCGGTTCTTTCTGGGTTTGACCTTCCAAATAGTTGTTTGAATGG AGTTGGACTTGGATCTAGCAACTGATCCTCCTCCAACCCAACATACTCCTTGGCTCAATCAGATTCTGCATGTCTTAGGT TATGAATAAGATCAGCATTTGTCTGGTTCTACCACTATCCATTTATTGCTAGTGCACTTAAAGGCTATTAGCATTCCAAC CAGTTGAATATGCCACACTCAAATACTGTCACATCTGCTTCTGAAAAACGAGAACATTCTAATTTTCTTTTCCCATGTCT TTGTATTAGTTCATTATTCTCTATCCAATTCTTGGTTACTTCATCATTATAACTTTGTATTTATAATTTACATGTTGTAT ACTTATTTTTTGCTATCTTAAAACAGGTACTTGCTGCTTCTCGTGTAATGGTTTGCTGGCAGCCAATTGGTGTATCAATG GGCATCTATGATATGTGTCATAGGTATTCTTATATAGCATGCTAATAGTATGCTTCAACCAAAGCTTTCACTGAAAACCA TGCTGAAAATTCTATGTCATTAAAAGGTACCTTAAGGAAAGGAAACAGTTTGGAGCACCATTAGCAGCTTTCCAAATCAA CCAACAGAAACTTGTTCAAATGCTTGGTAACGTTCAAGCAATGGTTCTTGTTGGTTGGCGCCTGTGTAAGTTGTATGAGA GTGGTAAACTGACGCCGGGTCATGCTAGCTTGGGGAAGGTAACTCATAACCTATCCACATTTATAATCATACTATACTCA CAAAATAAAAGAAAAGAAAACCCCAGAAAGTTTCTGACCAGTTTACCTTCATTGATTTAATGATCGGTTCGGTTTTTAAA ATACTGGTATGTGGTACTGGTAGATAACTTACAATAATTTGTCATCATTTTTCAGTCGTGGATCTCCTTGAGGGCAAGAG AAACAGCTGCCCTGGGGCGAGAGTTGCTTGGTGGCAATGGAATTTTGGCTGATTATCTTGTGGCAAAGGTTCTCATGCCT AATTCCTAATTTAGTAATTTAACTTCAGCAGATATTGATACTACATTTCCAAAGTTCTTACCAAAACCCAATGGGTGTCG GTCCTTGTGATTAAAACTTAGAGTTGGTTGATAGAAACCATAAGTCGAAAGTTAGATTCTTACTTCTTAGGAGTCGTATT CTTGAGGGTCTTCACTACATTATCACTACATTAAGGTTGGAATTACAAGAACAATTTAGGACATCAAAAGAAGTCCTGAC CTAGAAGAAAGGCCCAACTGTGAAATTTTATTAAACCAAATGGATGCTGCTAGTGATCTCTTCATTCTAACTATGTACAA ACCCTGCATGGGTTCTATTCCAATAGATTTGGATTTTTTTTTAAAACGAGATGGAAATGGGGGCCCAAGTGTATATCTTA TGATACTTCTTTGATTATTATTTAGTATAGTAGTGATGTGGTGATTTCAATCATATCTATAGAAATTGCTCAATTTCCTA AGAGTCTATGACCTAACTCATGCAAAGTGCCTATCTTAACCACAGCATAACCTCCGGCTTACTTCTTGTGACTTCACTGT TTTTGTTGATGAAGGCTCTGTTGGGCTATGATTAAACCAAAACTCAATTGAAGTTTAAGCTCACAGAACATGATTATTAC CAGACATCAGATTAAAACTTCTATACTTTTCCAGAGATTGGCCTCATTAGTCTACTTTGTTTTTATTGACATTGTTCATA GATTGGGACATTTTGTTTACTGACAGTGACATGTTTTTAACTTTTATGCTTTTATTCTCTATTGTTGCAGGCATTTTGTG ACTTAGAACCGATCTATACCTTTGAAGGAACCTATGACATCAACACCTTGGTCACAGGTAGGGAAGTTACTGGTTTTGCA AGCTTTAAGCCGGCTGCTCAAAGAAGTAGAATGTGA
CDS sequence (LotjaGi1g1v0442600.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGGGAGTGCTGTTGCTGCAGCAGAAATTGCTAGAGTTGATGCAAGCTTTTCAGTTTTCATTTTGGTCCATTCATG CTTGGCAATGCTCACCATTGCATTGTGTGGATCTGAAGCTCAGAAGCAAAAGTACCTACCTTCTTTGGCAGAGCTAAAAA CTATATCATGTTGGGCTTTGACTGAACCTGATTATGGAAGTGATGCCAGTTCTTTGAAGACCACAGCAACCAAGGTGGAA GGTGGTTGGATCCTTGAGGGCCAAAAGAGGTGGATAGGAAACAGTACATTTGCTGATTTGTTGGTTATCTTCGCCAGGAA TACCACAACAAATCAAATAAATGGCTATATTGTAAAAAAAGATGCACCTGGTTTAACAGCCACAAAAATAGAGAATAAAA TTGGACTTAGGATCGTACAAAATGGAGACATTGTTTTGAAGAAACTTTTTGTCCCTGATGAGGATAGAATAGCAGAACTC AATTCTTTTCAAGACACAAACAAGGTACTTGCTGCTTCTCGTGTAATGGTTTGCTGGCAGCCAATTGGTGTATCAATGGG CATCTATGATATGTGTCATAGGTACCTTAAGGAAAGGAAACAGTTTGGAGCACCATTAGCAGCTTTCCAAATCAACCAAC AGAAACTTGTTCAAATGCTTGGTAACGTTCAAGCAATGGTTCTTGTTGGTTGGCGCCTGTGTAAGTTGTATGAGAGTGGT AAACTGACGCCGGGTCATGCTAGCTTGGGGAAGTCGTGGATCTCCTTGAGGGCAAGAGAAACAGCTGCCCTGGGGCGAGA GTTGCTTGGTGGCAATGGAATTTTGGCTGATTATCTTGTGGCAAAGGCATTTTGTGACTTAGAACCGATCTATACCTTTG AAGGAACCTATGACATCAACACCTTGGTCACAGGTAGGGAAGTTACTGGTTTTGCAAGCTTTAAGCCGGCTGCTCAAAGA AGTAGAATGTGA
Protein sequence (LotjaGi1g1v0442600.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGSAVAAAEIARVDASFSVFILVHSCLAMLTIALCGSEAQKQKYLPSLAELKTISCWALTEPDYGSDASSLKTTATKVE GGWILEGQKRWIGNSTFADLLVIFARNTTTNQINGYIVKKDAPGLTATKIENKIGLRIVQNGDIVLKKLFVPDEDRIAEL NSFQDTNKVLAASRVMVCWQPIGVSMGIYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNVQAMVLVGWRLCKLYESG KLTPGHASLGKSWISLRARETAALGRELLGGNGILADYLVAKAFCDLEPIYTFEGTYDINTLVTGREVTGFASFKPAAQR SRM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 55 | 55 | 4.8E-12 | ||
| Phobius | 1 | 15 | 15 | - | – | |
| Pfam | 2 | 51 | 50 | 9.2E-11 | ||
| PANTHER | 2 | 321 | 320 | 2.1E-199 | – | |
| PANTHER | 2 | 321 | 320 | 2.1E-199 | – | |
| SUPERFAMILY | 4 | 161 | 158 | 3.27E-47 | ||
| Phobius | 16 | 36 | 21 | - | – | |
| Phobius | 37 | 323 | 287 | - | – | |
| Gene3D | 56 | 162 | 107 | 4.8E-32 | – | |
| Pfam | 57 | 148 | 92 | 2.4E-22 | ||
| Gene3D | 163 | 323 | 161 | 7.1E-39 | – | |
| SUPERFAMILY | 166 | 311 | 146 | 3.22E-33 | ||
| Pfam | 167 | 307 | 141 | 3.9E-23 | ||
| ProSitePatterns | 267 | 286 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Acyl-CoA dehydrogenase activity | Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor. | ||
| Molecular function | Oxidoreductase activity, acting on the CH-CH group of donors | Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. | ||
| Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi1g1v0442600.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…