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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0443000 |
| Transcript ID | LotjaGi1g1v0443000.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT5G01360.1 trichome birefringence-like protein (DUF828); Swiss-Prot: sp|Q8LED3|TBL3_ARATH Protein trichome birefringence-like 3; TrEMBL-Plants: tr|I1JLD0|I1JLD0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0443000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:94030129..94032835) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGCCTCTCAGAGGAAAGCTTCCTCTGCCCATCATTATCACCACTCTCTGTGTTCTTTTCTTCATAGCTGTCTTGTA TGCAGAGAGACTCAGTTTCCTCTCTTCCAAGTCAATTTTTAAGTTCAAAACCTGTCCAAGAAAAAACACCAAACCAAAAT CCAGTAAGTGCATATTTGGAAATCCTTCTACAATTTATTCTCAAGTCAAAATGAATTCTACTGAGAAGCTTATGTGAGTA GCTTGTGGGTGTCAGAATTGATTCCGAGGAAAAATATGCTAATCCTAACATAGAAACCATCTCACCTCATCTCATCTGCT TTCTTCTTGCAAATTTGATTCTAATGCAATGATCATGCCATGATTGTCCTAACAGGTGATAAAAGAGTAGATAAGGAGAT TGCAAATGCATCATGGATTGATGACAGGTTTGATTTTGACCCAGAGGAGTGCAATGTTGCCAATGGGAAATGGGTGTATA ACAAATCAATAGAGCCTCTTTACTCTGACACAAGCTGCCCTTATGTAGATAGACAGTTTTCTTGTGTCAATAATGGGAGA ACAGATTCTGACTATCGCCACTGGGAGTGGCAGCCAGAAGATTGTACCTTGCCCAAGTAAGTTTTAACGCATTTTTGAAA ATTCTTCTAAAATTGACTCTAAAGCCAAAATCAATAATGAGAAGAAAGCTCCTAGGTGTCAGAAACCAGGAATTGATTCT GATGAAAGACAAGCAGACCCAAACACACTATCAAACTCTAACATATCATCTTTGACTGCTGTACTTATTTTATGTATCTC CAACATTTTGGTCATAGATATACATGTTTACCTGATATTACACACATTATTCCTTTGTAGTTTCAATCCAGAGCTTGCCC TCCAAAAGCTTCAAGGGAAAAGGCTGTTATTTGTAGGAGATTCACTGCAAAGAAACCAGTGGGAATCTTTTGTCTGCTTG GTAGAATGGATCATACCTCAAAAGCAGAAATCTATGAAACGAGGGCGGGTTCATTCAGTCTTCAAAGTAAAGGTATTGAT ACATACAATTGATGGTCAAATATGTATACTCAATAATTTATTAACTTAGTCAAAACCTCTTCTGCTTCTCAGAGCTAGAT CAACTTATCTTTCTTCAGAATCGATTCTGAAACTAAAAAGCTACTTACTGCAATTTTCCTCCAAAATTGACTTTGGCTTT AGGATCAATTGTTGGAAGATTTTTGAACATTGATTCAATCATGTACTTGACACAAATACAATAAAAGGTCTTACTATTAG GAATTCTTCTGAATAGATCATACTACTAACTCTTGGAAATCAAGCTACTCAAACTTGAAAATTCAGGCTAATTCTTTTTT GTGTCTGTGCTTCCATAGGAATACAATGCTACTATAGAATTCTATTGGGCACCATACCTGGTTGAATCCAACACTGACAT CAATATCATTGGAGATCAAAAGAAAAGAATAATCAAAGTTGATGCCATCGCCGAGCGCGCCAAAAACTGGACTGGAGTAG ATATCCTTGTTTTCAATACCTATGTATGGTGGATGAGTGGTCTCAGGATCAAATCATTGTAAGCTTCCTCTGAACTAATC TGATTTAAATTACTCACTAAATCTGCTTAATCTGTCATTAATCTTTGGTTGCAGTTGACCAAAAGAAAGAAAATGGTTTC TAACATCTAGTTTAACAATTTCAGATGGGGATCATTCGCCAATGGAGAAGCAGGGTATGAAGAATTTGACACACCAATTG CTTACAAGTTAGCTTTGAAAACATGGGCCAATTGGGTTGACTCAACTATCAATCCAAACAAAACCAGAGTCTTCTTCACA ACTATGTCACCTACACACACAAGGTCTCTTCTCTCTTAGAAAAACTTTAAATAGCAACTTATGCTATAAGCTAAGTAGTT TTTAGCTTTAAACACTTTTGAAATTTAAAAAAAAAAAACTTCATTAATGTTTATTCAATTAATAACTTAGCTTGTAACTT GCTCTCAAAGCCTTTATAATTAAGTGATCTGGAATTCAATCATTGTTGCCTCACTATTCTAATAAATAGTTAAATTTTAA TATAAAGCATGTGGGCCTTTGTATTATACTTGCAAGAGAAAACCCATTAATAATGTGCCTTGATCTAAAGCTTTTGGGAT ATGGATTTGGATTTCGTGCCCTAACAGTTCAAATTTAAAGAAATTAATTTTATGTGTATGATTGTCATTTTAAATTCACC ATCCAATTTTGTTATGACGTGTACTAAGCTAAGCTATGACTACAGTGACTTTAGAAAATTTTGAAAGGGAAATTGTTGAA ATTGAGAGTAAAACACTAAAATGTTTTTCTAACAACTCAAATATCTTGTTTCTCAGAAGTCAAGACTGGGGCAACATGGA AAATGTGAAATGCTTCAACGAGACAAAGCCAGTGAGGAAAAAGAATCACTGGGGAACTGGTTCTGATAAGCGCATAATGA GTGTGGTGGCCAAAGTGGTGAAAAAAATGAAAGTTCCAGTGACTGTTATCAACATAACACAGATATCAGAGTACAGAATT GATGGCCATTCCTCTGTTTACACTGAAACTGGAGGGAAATTGTTAACTGAAGAGGAAAGAACTGATCCACAAAATGCAGA TTGCATACACTGGTGTTTGCCTGGAGTTCCAGATACATGGAATCAAATATTTTTGGCAATGTTATAA
CDS sequence (LotjaGi1g1v0443000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCCTCTCAGAGGAAAGCTTCCTCTGCCCATCATTATCACCACTCTCTGTGTTCTTTTCTTCATAGCTGTCTTGTA TGCAGAGAGACTCAGTTTCCTCTCTTCCAAGTCAATTTTTAAGTTCAAAACCTGTCCAAGAAAAAACACCAAACCAAAAT CCAGTGATAAAAGAGTAGATAAGGAGATTGCAAATGCATCATGGATTGATGACAGGTTTGATTTTGACCCAGAGGAGTGC AATGTTGCCAATGGGAAATGGGTGTATAACAAATCAATAGAGCCTCTTTACTCTGACACAAGCTGCCCTTATGTAGATAG ACAGTTTTCTTGTGTCAATAATGGGAGAACAGATTCTGACTATCGCCACTGGGAGTGGCAGCCAGAAGATTGTACCTTGC CCAATTTCAATCCAGAGCTTGCCCTCCAAAAGCTTCAAGGGAAAAGGCTGTTATTTGTAGGAGATTCACTGCAAAGAAAC CAGTGGGAATCTTTTGTCTGCTTGGTAGAATGGATCATACCTCAAAAGCAGAAATCTATGAAACGAGGGCGGGTTCATTC AGTCTTCAAAGTAAAGTCCAACACTGACATCAATATCATTGGAGATCAAAAGAAAAGAATAATCAAAGTTGATGCCATCG CCGAGCGCGCCAAAAACTGGACTGGAGTAGATATCCTTGTTTTCAATACCTATGTATGGTGGATGAGTGGTCTCAGGATC AAATCATTATGGGGATCATTCGCCAATGGAGAAGCAGGGTATGAAGAATTTGACACACCAATTGCTTACAAGTTAGCTTT GAAAACATGGGCCAATTGGGTTGACTCAACTATCAATCCAAACAAAACCAGAGTCTTCTTCACAACTATGTCACCTACAC ACACAAGAAGTCAAGACTGGGGCAACATGGAAAATGTGAAATGCTTCAACGAGACAAAGCCAGTGAGGAAAAAGAATCAC TGGGGAACTGGTTCTGATAAGCGCATAATGAGTGTGGTGGCCAAAGTGGTGAAAAAAATGAAAGTTCCAGTGACTGTTAT CAACATAACACAGATATCAGAGTACAGAATTGATGGCCATTCCTCTGTTTACACTGAAACTGGAGGGAAATTGTTAACTG AAGAGGAAAGAACTGATCCACAAAATGCAGATTGCATACACTGGTGTTTGCCTGGAGTTCCAGATACATGGAATCAAATA TTTTTGGCAATGTTATAA
Protein sequence (LotjaGi1g1v0443000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKPLRGKLPLPIIITTLCVLFFIAVLYAERLSFLSSKSIFKFKTCPRKNTKPKSSDKRVDKEIANASWIDDRFDFDPEEC NVANGKWVYNKSIEPLYSDTSCPYVDRQFSCVNNGRTDSDYRHWEWQPEDCTLPNFNPELALQKLQGKRLLFVGDSLQRN QWESFVCLVEWIIPQKQKSMKRGRVHSVFKVKSNTDINIIGDQKKRIIKVDAIAERAKNWTGVDILVFNTYVWWMSGLRI KSLWGSFANGEAGYEEFDTPIAYKLALKTWANWVDSTINPNKTRVFFTTMSPTHTRSQDWGNMENVKCFNETKPVRKKNH WGTGSDKRIMSVVAKVVKKMKVPVTVINITQISEYRIDGHSSVYTETGGKLLTEEERTDPQNADCIHWCLPGVPDTWNQI FLAML
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 404 | 404 | 1.5E-214 | ||
| Phobius | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 404 | 404 | 1.5E-214 | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 12 | 23 | 12 | - | – | |
| Phobius | 24 | 28 | 5 | - | – | |
| Phobius | 29 | 405 | 377 | - | – | |
| Pfam | 78 | 131 | 54 | 3.5E-20 | ||
| Pfam | 133 | 404 | 272 | 3.7E-79 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0443000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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