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LotjaGi1g1v0443300.1

Overview

Field Value
Gene ID LotjaGi1g1v0443300
Transcript ID LotjaGi1g1v0443300.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Chlorophyll synthase; TAIR: AT3G51820.1 UbiA prenyltransferase family protein; Swiss-Prot: sp|Q38833|CHLG_ARATH Chlorophyll synthase, chloroplastic; TrEMBL-Plants: tr|A0A072U0L0|A0A072U0L0_MEDTR Bacteriochlorophyll synthase, putative; Found in the gene: LotjaGi1g1v0443300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:94059919..94068235) extracted from Lotus japonicus Gifu genome v1.2.

ATCATCGTTCATTCAATACGACCAAAAAGTTCGATAACCCAACTCTCTCTCTTGTTTCTCAGTGCCATCTTCGTAGCTCA ATGGCTTCCCTAGTCAACATGGTTTCTGTTTCACCAAGAATACTATCACCCACAACCACAAGAGCCCCTTCAGTTCAATC ACGCCCTGTTCTGTCACCGTTTTCTGATTCGTTTACCAGTAGGTTGATTCAATACAGTGAACTGTTGTGTGCTTCAGATA CCCTTTTGGATTTTTTTCTGTATTCCCATATCCAATGTGCTAACCGATCATGCTTCTTCATAGTTTCTTAGCAACCAACA TGGTTATAGTTTTCATTTTTGTAAGTGGGTCTGAAATTCTTGGTGTTTATGTGGACATTGCAGGGAGAAGATTAACAGTT AGAGCAGCAGAAACTGATGCAAATGAAGGTTTTTTGGGGTTTTGTGGTTTATTTATTATCTGCCCATTTCTTATTATTGT GTATTTCTCACAAAGTTTTATGTTTTTTTTTGGTTGTTGTGTGGGGGTGGTCCGTGGTTGGGCAGTTAAATCTCAGGCAC CGGATAAGGCACCAGCTAAAAATGGTTCAGCCTTCAATCAGCTTCTTGGTATCAAAGGAGCTTCTCAAGAAACAGTGAGT TTACTGAAACCATGTTGCAGTTTATTTCCATTCTATGGTGTGGATTTGTTGCTTAGATGGGAAATTATGTTTTCGATGTT CAGTGGATGGTTGCATGAAATGTTGAAATGAAAAAATTGGATGGTTTAGTGGATCCAGGATTCTGTAGGATGAGTAATTT CTTCAGCCACTTAAATTTGAGAAGTAGGTGCTTAAGAACAAATAACAGAAACTGTTATCGTTTTTGTGGGGATGGGATAC TGTGAATTATTACTGAAGAAGGTCCATTAATTTCCAGTTTGAATGAAATTTTGTAGACTTAATCTACTGCATAAGAACTT TCCATCCAACTGTTTGACTATCACCTTTGAACCCGTAGCCAAAGTCAACACTCACCACCATCAAGGTGTTAGTTTCCATT CAAACCTAGTTTGGCCTCTTTTCTGTTGCATGTAAAAAAAAGCATTCCCAATTGTAATTGTTGACATGAAGGAAGAAGTC TACATGGAGATTCTACAAGGGGTAGATATAGATTTAGGTAATATTGTGATCACTGGAGACTATTTTTGAGATAGACCGTT TAAAGAAGTCCGTAGCAGAGGAATTTGGGTGAAAGAACCTTGGCAACTTATGGTAATTTCTTGACGTAGAAGTAGCATGG GAGGGTATTTCTTTTTCTGAAAGCAAGTATACACAGGCGTTCTTGACAAAACAGATATGTTGGGGGTGTAAACCTGCAGA AACTTCTTTGGAATTTTAACTACATACTTGGTCTCGAACTAGAAAGTTTCCTGGATGACGCTGGGATTTATTATAGGATT GCAGGCATATTGAAATCAAACTAGTCTGGATATATCATAATAGGAGGATGATTGGGAGTGAATCCTCGTTGTCAGGTCTC TTAGGAGAAGGCTCCAAGTGAAGTTCTCCTGCAAATGCCCTATGGAAAACAGAACAGAGAAGGCTCTGTGTTCTTAAGCA TTTTTCAGGAAAACTGAAATCTACAATTTTAGGACCTTGTCCCCAAATAGTTTTGACCAATCAAATCAAGTACAAAAGAT CAGGAATTAGAACATCATTTCCTAATACGCTAAATTAGAGAAGCAAAATAGGCCTAGTTAAACTAAACAAGGAGACAAAG ATTTTTCCCAATATGGTTACGATTTGAATATTTTGAATCACATGGAGGTAAACACATGACTAACAACTATTGCTTGACTA CCTCTGTTTTTTTTTTAAAAAAAGGCACTTCCTCCCTCTGGAATGAATTATTGCATATTTCTGTTGCTATAGAAATTACT GGTTTTCCAAATGACTATTCTATTTTGCTCCTAAAGTGTGTAATATGAGATTATGCTGGTTGCTATATTGAAGTACAGGT GGAATGTTGGCCAGCTAAAATATCATGTATTCTTGGTAAACAAACTGATTTGAATGTCAAATGCTAAATTGAATTCTTAA CACCATATAGGAAATGCCTTCATCCTGTTTTTAGCAAACTCTTCCAAATCTGCCTCCCACAATATTTTTTTTATCGGCCA ATTTTTATTTATTTTTCCTGGGGAGAGGTTTTTTATTCCCTGCACCTGCCTCCCACAATGTATACTAATAATCTAAATAT GTGTCTTTTACAATCCATCAATGTCTACTAATCTATTTTTGTTTTAATATATGTCATTGCAAATTTAGTTTTGTGTATAT AGACACAGTAACTGAGTAAGTATAACTTTGGTTCTCAATTAATTACAATAACATATGCAGGTTTATTGAGTTATTGCATT AAAAAATAATATAACAATCAGATAACTGTTTTTGAAAAATCTGTATTTGATCATTCATTGTGTAATCTATTGTGCAGAAT AAATGGAAGATTCGTCTTCAACTCACAAAGCCTGTAACTTGGCCTCCATTAGTTTGGGGTGTAGTTTGTGGTGCTGCTGC TTCTGGTATTAAATTTTAGCATAAGATTAAAATTTGACATGCATGGTAAACAAAAAAATTGGTCCTTCTTTTTACTATGA TAATTGTTTAGAAACATTCATTTTATAGTCCTATTTAATGCTTCATCGTCAGGGTATACATTCATGTATGCGATTCGATA CACCTTGTCAATATTCTGAACCAACTATGCCCTTTGGGGCTTGGGCAGGAAATTTCGAGTGGAACTTTGAGGATGTTGCT AAATCAATCATGTGCATGATGATGTCTGGCCCATTCCTGACAGGATATACACAGGTAGTACTTTTTGTTGATGTAGAGTT TTATCAGCTGCTATTGGATGGGAGTATAAACTTACATAACATTGAATTGTGGGCTGTTAATTGTAGACTCTGAATGATTG GTATGACAGAGAAATCGATGCAATAAATGAACCTTATAGACCAATTCCTTCTGGGGCAATATCTGAAAATGAGGTATCAT CTAAATCTGAGACTATATGTTCTTTCCTTTTGTTACTTTCTTTGTTTTTTTATTTACTTTCATTTTTTGGCTCAAATTTC CGCAGGTAATCACACAAATATGGGTGCTGCTACTAGGAGGTCTTACCTTTGCTGGTATATTGGACATATGGGTGGGTACT GTAAACAATAACCCCATGATCCATCTCTTGACTGTAAATTATTAGAAGCATGATTGCTAAATTCTTCTTTACAGGCAGGG CATGATTTCCCTATAGTTTTTTACCTTGCTCTGGGTGGATCCCTGCTGTCATACATATATTCTGCACCTCCTTTAAAGGT AATTCTTTTACAAATTTCTTCATGTTTTTAATATTTTCTATTCATTTTGCCTTTAATGGTCATTTGACTAAGTTCTACAT GTTTCTCTAGTTAAAACAAAATGGATGGATCGGAAACTTTGCCCTTGGAGCAAGTTACATTAGTTTGCCATGGTGTGGTA TCTTCTACTTTGATAAGCACTAGTTGTTATATGTTTAAACTGTTATCCTTATGAACATTTAGTGTATTGTTAATATGAGT TGCTGAACATGAATAGTACCTAGCTCTTATTTGCAAGATGCAACTGATAGGCCAATGAAATATTTTTTTAAGAATATTTT AAAAATTTAATAAAAAAGTTATAGCTATTAGATGGAATTTACTTTTGGAATATGATAAGTATTTCAGTAAAAGATTAACT AGGGTAACCCTGAGCCATTTCATGCACAAAGAATTTGATAAGAACCTTAGGAGAACCATACCATAAAGCTAGCCGCTGCT AGTCCAATGTGGGACCCAAATCCTATACCTTGCAATCGGTTCTTAACAGCTGCACAGCCCCGGCGCCCACACAGGGGTGG CTGTGCACTAGCCCTTTCACTAGTTTGGGCAAACACTGCAATGCCGGTGTCACCACCGGCGCTGTAGTTAGAGAGCCCAG GGCCTTATAGACCCCACATTATAATCCTATACTTCCAATGAGGGACCCAAGTCCCATGCCTTGAGCATGTTTGGATATCA GTTGGTTGAACTCAAAAAAACCAATTTCCTCTTCCCAACACATAAAAGCCAATGGAACCAAATGGATGGATTGAGGGAAT GTACTTTTACTTGTTTTCAAATTTTAAGCAAACTCGCACCTTGCAATTGAGTCTTATCAGAATTATGATTAATCTGATCT TATTTGATTTCCTTGGGAGTTCATTTATCTGATTTGCACTGTGTTTCAAAGGGCTTGATCAATTTCTCATTGACAGGTGG GCTGGCCAGGCTTTGTTTGGAACTCTTACACCAGACATAATTGTTCTCACACTCCTATACAGCATAGCTGGAGTAAGTAG CATGTTACTTTGCACTTTGTTAGATTGATAATGTGTCAAACTGTTACCTTAGACTAGTTGTTAATCCTGTTGGTGATTTG CTGTATCACATTGCAGTTGGGAATTGCCATTGTCAATGACTTCAAAAGTGTTGAAGGGGATAGAGCTCTAGGACTTCAGG TATACTATATCATTATCCTTTCCAATACATCTAAACTCACTTTTATTGTCAATGACTTCTACTTTTAAGTGTTCCAGAAA TTTTAATCATTGAAGTAGCTGCTGATTTTTCTATTGGCAATCTTCTTTGAATAGTCTCTTCCAGTTGCTTTTGGTTCTGA AACAGCAAAATGGATATGTGTTGGCGCAATTGACATTACACAATTATCTATCGCTGGTAAATTTTGATCCCCTTGTACTC TATATAGTGATTTGACTGTTCTTCAGGATACTAAAACAAAAAGTTGGAAACTTTTCACCTTAATCATCATCCTTCTACTA TTTATTACTTGTGGATATTCAACAACAACAAAAACCTTATCCCACTTGTGGATATGTAGAGATTAATTAAATTTCAGATG AAAACGGAAAATGACACATCTTGATGTGCTACTTCAACAAAAAGTGTCCCTAGATATGCATTTTTTCTGTTGTTAAACTT CATAACTGATTAAACGAGCTCAAAGTTCTGGTAAAGCTGTACTTTTATAGCAACCAAGAGTTAATTTTTGAATTAGAAAC CAAAACTGGGTCTGCATTCAAAGAACTTTACTGATATTTTACGGTTTCAGGATATCTACTTGGGGCTGGCAAACCGTATT ATGCGTTGGCTTTAGTTGGCCTAATAGCTCCACAAGTCTTTTTTCAGGTAAAGTACACACAGTGGCATGCATGATGTTAG AAAATTAATTGCAATCATGTTACATAACGATTTAGAGATAAGATCTTCTAAATTGTTATTTCTAAATTCGTGTTAGCATC TCATTGGTCTTATCATCTTGTGCCTTGCAGTTCAAGTACTTCCTCAAGGACCCTGTGAAATATGATGTTAAATATCAGGT ATATATAACCACTTAGTGCCTATTTATTTGCTAAAAATATTTTCGGTTACAGTTAAATAAAAGTGAGTTTAGATGTATTG GAATGTGTGCAATCCTGTTTTGAGTATTTTTCTATCAAGTGAAAGTGGGTTTTTAAAATATAATTTTATCAAAAACTTGA TTTTACCCCATATTTTACTCAATTTTAAAACAAATAGACCCTAAGTATATGTTTGTTTTGACATTGGACGTTTTGCCTAC AACTTGTTCCTTATGGAAATTCTTACTGACAGAAGAACGCCTTAGATTTCAGCTTCTAAGCTTATATACATCAGCATTAC AATTTAGTGGGGGAAACGATACCACCGTCATGTGAAACCATTATGAATAGATCTAGCATGTTATTAATTATGCCTTTCAT GTTTCCAGGCTAGTGCTCAGCCATTTCTGGTGCTCGGACTATTAGTTACTGCTCTAGCCACTAGTCACTGATCTCAACAC ATGAACTAAAAAAATAAAGGATTGCCAGACAGAAGGAAATTCTAAAATCTATGGCTCTGGTTAGGACATTGAAGATATGG GCCATAGTTCTGCATACAGGGAGTTTCATCAAGTACTTGTGTTTTTTCCCTCTAATTTTTGTTTTTGTTCTGTCTTATAA TTCAAGTTTTTGATGATTTGTAAGTTTAGCTTGAGAAGAGTTTCTCATTAGGAAGCTATAAAAGACAATTGTACAAACTA AAAAATATTGAAATCCCTTTTGCGGTTTTTCATCAATATAGTCTACGATTTAGCTGTGATTTCTTGGTTCTAGAGGTCAA TTTTTTTCACAAGGCCCCTCAAAAAAACTTAATGGAACTCATGTTTAAAGATAAGAAAACATCTATTAAGTATGAAAAAG TGCCCCACTGGCAGTTTAGCACTTTTACGACATCAGTTTAAGATAAAACCTATCTCTAAAGTTCCTAAACCTGAAACACT AAACCTAACTAACAAACAACAACATCAAAACACACCAGTAAGCATGTCCCTTATCTAAGATAAAACCTGCCATCTAAGAT TCCTAGCTAAACCTGAAAACCTACCATTACTATCTAACATCAGCTAGCATGAAAGCATGAAACAGTACTACAAAAAGATA ACTGTTAACACTTAACAGAACACCACAACTTTATACACATGCTTTTAGTCATTCCTGAACTTAGACTCATCAATCTCTAT GCCTTCCTCTGCAGCACGCTCTCCACCAGACTTGTCCATAGTGCTGAGCCCTCCTTTGCGCCCCATCTCTTGATACCCTT CTCTGCCCATTTGTTCCTTCCTTGTTTGCCCTCCTTTGGTTCCCATCTCATGATACCCTTCTGACCCTAGTTGCTGCTTC CTTGTCTGCCCTCCACGGCTCCTTCCTACACATCCATTCACATCATAAAACTCATCGAAGTAAACATAAAATAAAATTCA TTAAGTGTATCTTTAGATATACAGTTGATAATCACAATGAGTCAAAATCATGGTGAGTTGATAATCACAACTAATAGATC TGCTGATTGAAGTGTGCCAAAATCACGGTAAACAGACTTCTATCATGAGCCTGGCTCACGGTAAACAACAACTTCCGCTA AATTTTTACAATCAAACTTTTGTGACTGTCCATCTTTGTTTGTGAAAAATCATTATCAAATAATAGCCTAAATCACATTG AACAACCCAAATCATAGTAAACAAATATAACTTATGCTAATTAATTTCTGCGACTGAACTTTTGTGATTGTCCACCTTAA AACAGTAAACAACCAAAATCATGATGTAAAAAACAACTCCTTTGTAACTGAACTTCTGTGATAGTCATAGTCCACCTTAA TTTTGGTTTCACCTGTCTATGAAAAATTCACTAACTCAATGCAAAACTCATGTATGAGAGAGAGAGAGAGAGGGGTTGCA TGCCTTGAGCAAGGTGTTCTTGAGCTTCAAGACTCTTCCCACCAGTGCCACCAGGAACCACAGTTTCACCAAGCCTTGCC CTCTCATCAAGTTCTTCACGGTTTTCTTGTTGAGTTGCCATGCTACGTACTCACACTACAACTGGGTTTTCTTTTCTCTG AGACTCTTTTACTTAGGGATTGAGTGATTAACTGAATGATGCACGATATTGATCACAGCACTGAAAGAAGTAAGGTTCAT TTTATAGAATGCAAAATGTGCATGTAAAGTTGTAAACTAAAATAAACTAGCTAGTAGTGCAGATTAATAAGAAAATGAAG TGCTGCCATGCATGGACACGTGTTACACTTACAGACGCGGTTAAAGGTGAATGAGGACACGCACAATGGTGCCATTGTGA AAATGGCATATCTTGACACATACGATTCTTGGCACAGTGATGTCTAGCAAGAGCAATCGGTTGCGGTGATAGTTTTATAT GTTTTTCTGTCTAAACTAAATTGGGAACATTGTGTGAATTATAAAACTATATTTAATTCGAGTGGTGTTTTTTAAAAAAA GATGTAAAGCTGATGTGAAATGAGTGAAACAAAATTATATCTAAATCCTGCGTCCAAACAAGTGATTAGAAACGTTAAGA CATTTAATTTACTCACATGTGTGTATGATGATACAAGTGCTAGCTTAATGGAATAACAAGGTATAGTATTTTTTTTTGGG GTGTTCGCAGCTTGGATTGGTAGAAAAATATGTTCGATTTAATTACTTCAGTTTTGTCACTTCACCTTCCCACCTTCAAT CGATTTTCTTTTTAAATCTTATCCAATTTTTATTTGTTTGGAATGAATTGGATTTTGGTTTTTCAAAGATGTTCCACATA TTAAAATCAAAAAAGAAATGAAAATTATTTTGAATTATAAAACATCACATTAGTCTGAGAGTTTTTTAATAGGCTTA 

CDS sequence (LotjaGi1g1v0443300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCCCTAGTCAACATGGTTTCTGTTTCACCAAGAATACTATCACCCACAACCACAAGAGCCCCTTCAGTTCAATC ACGCCCTGTTCTGTCACCGTTTTCTGATTCGTTTACCAGGAGAAGATTAACAGTTAGAGCAGCAGAAACTGATGCAAATG AAGTTAAATCTCAGGCACCGGATAAGGCACCAGCTAAAAATGGTTCAGCCTTCAATCAGCTTCTTGGTATCAAAGGAGCT TCTCAAGAAACAAATAAATGGAAGATTCGTCTTCAACTCACAAAGCCTGTAACTTGGCCTCCATTAGTTTGGGGTGTAGT TTGTGGTGCTGCTGCTTCTGGAAATTTCGAGTGGAACTTTGAGGATGTTGCTAAATCAATCATGTGCATGATGATGTCTG GCCCATTCCTGACAGGATATACACAGACTCTGAATGATTGGTATGACAGAGAAATCGATGCAATAAATGAACCTTATAGA CCAATTCCTTCTGGGGCAATATCTGAAAATGAGGTAATCACACAAATATGGGTGCTGCTACTAGGAGGTCTTACCTTTGC TGGTATATTGGACATATGGGCAGGGCATGATTTCCCTATAGTTTTTTACCTTGCTCTGGGTGGATCCCTGCTGTCATACA TATATTCTGCACCTCCTTTAAAGTTAAAACAAAATGGATGGATCGGAAACTTTGCCCTTGGAGCAAGTTACATTAGTTTG CCATGGTGGGCTGGCCAGGCTTTGTTTGGAACTCTTACACCAGACATAATTGTTCTCACACTCCTATACAGCATAGCTGG ATTGGGAATTGCCATTGTCAATGACTTCAAAAGTGTTGAAGGGGATAGAGCTCTAGGACTTCAGTCTCTTCCAGTTGCTT TTGGTTCTGAAACAGCAAAATGGATATGTGTTGGCGCAATTGACATTACACAATTATCTATCGCTGGATATCTACTTGGG GCTGGCAAACCGTATTATGCGTTGGCTTTAGTTGGCCTAATAGCTCCACAAGTCTTTTTTCAGTTCAAGTACTTCCTCAA GGACCCTGTGAAATATGATGTTAAATATCAGGCTAGTGCTCAGCCATTTCTGGTGCTCGGACTATTAGTTACTGCTCTAG CCACTAGTCACTGA 

Protein sequence (LotjaGi1g1v0443300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASLVNMVSVSPRILSPTTTRAPSVQSRPVLSPFSDSFTRRRLTVRAAETDANEVKSQAPDKAPAKNGSAFNQLLGIKGA SQETNKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFEWNFEDVAKSIMCMMMSGPFLTGYTQTLNDWYDREIDAINEPYR PIPSGAISENEVITQIWVLLLGGLTFAGILDIWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISL PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGSETAKWICVGAIDITQLSIAGYLLG AGKPYYALALVGLIAPQVFFQFKYFLKDPVKYDVKYQASAQPFLVLGLLVTALATSH 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP_GRAM_POSITIVE 1 22 22 -
Phobius 1 175 175 -
PANTHER 24 377 354 2.5E-221
PANTHER 24 377 354 2.5E-221
TIGRFAM 73 377 305 5.7E-186
TIGRFAM 88 374 287 6.3E-111
CDD 90 372 283 7.80408E-152
Gene3D 99 257 159 8.3E-10
Pfam 100 348 249 1.3E-38
TMHMM 173 195 23 -
Phobius 176 194 19 -
Phobius 195 199 5 -
Phobius 200 215 16 -
TMHMM 200 217 18 -
Phobius 216 226 11 -
Phobius 227 244 18 -
TMHMM 227 249 23 -
Phobius 245 255 11 -
TMHMM 256 273 18 -
Phobius 256 277 22 -
Phobius 278 297 20 -
Phobius 298 319 22 -
Phobius 320 324 5 -
TMHMM 324 346 23 -
Phobius 325 346 22 -
Phobius 347 357 11 -
Phobius 358 376 19 -
Phobius 377 377 1 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Chlorophyll biosynthetic process The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors.
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Molecular function Transferase activity, transferring alkyl or aryl (other than methyl) groups Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor).
Molecular function Chlorophyll synthetase activity Catalysis of the reaction: chlorophyllide a + 2 H(+) + phytyl diphosphate = chlorophyll a + diphosphate.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0443300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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