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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0443300 |
| Transcript ID | LotjaGi1g1v0443300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chlorophyll synthase; TAIR: AT3G51820.1 UbiA prenyltransferase family protein; Swiss-Prot: sp|Q38833|CHLG_ARATH Chlorophyll synthase, chloroplastic; TrEMBL-Plants: tr|A0A072U0L0|A0A072U0L0_MEDTR Bacteriochlorophyll synthase, putative; Found in the gene: LotjaGi1g1v0443300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:94060186..94065829) extracted from Lotus japonicus Gifu genome v1.2.
ATATCCAATGTGCTAACCGATCATGCTTCTTCATAGTTTCTTAGCAACCAACATGGTTATAGTTTTCATTTTTGTAAGTG GGTCTGAAATTCTTGGTGTTTATGTGGACATTGCAGGGAGAAGATTAACAGTTAGAGCAGCAGAAACTGATGCAAATGAA GGTTTTTTGGGGTTTTGTGGTTTATTTATTATCTGCCCATTTCTTATTATTGTGTATTTCTCACAAAGTTTTATGTTTTT TTTTGGTTGTTGTGTGGGGGTGGTCCGTGGTTGGGCAGTTAAATCTCAGGCACCGGATAAGGCACCAGCTAAAAATGGTT CAGCCTTCAATCAGCTTCTTGGTATCAAAGGAGCTTCTCAAGAAACAGTGAGTTTACTGAAACCATGTTGCAGTTTATTT CCATTCTATGGTGTGGATTTGTTGCTTAGATGGGAAATTATGTTTTCGATGTTCAGTGGATGGTTGCATGAAATGTTGAA ATGAAAAAATTGGATGGTTTAGTGGATCCAGGATTCTGTAGGATGAGTAATTTCTTCAGCCACTTAAATTTGAGAAGTAG GTGCTTAAGAACAAATAACAGAAACTGTTATCGTTTTTGTGGGGATGGGATACTGTGAATTATTACTGAAGAAGGTCCAT TAATTTCCAGTTTGAATGAAATTTTGTAGACTTAATCTACTGCATAAGAACTTTCCATCCAACTGTTTGACTATCACCTT TGAACCCGTAGCCAAAGTCAACACTCACCACCATCAAGGTGTTAGTTTCCATTCAAACCTAGTTTGGCCTCTTTTCTGTT GCATGTAAAAAAAAGCATTCCCAATTGTAATTGTTGACATGAAGGAAGAAGTCTACATGGAGATTCTACAAGGGGTAGAT ATAGATTTAGGTAATATTGTGATCACTGGAGACTATTTTTGAGATAGACCGTTTAAAGAAGTCCGTAGCAGAGGAATTTG GGTGAAAGAACCTTGGCAACTTATGGTAATTTCTTGACGTAGAAGTAGCATGGGAGGGTATTTCTTTTTCTGAAAGCAAG TATACACAGGCGTTCTTGACAAAACAGATATGTTGGGGGTGTAAACCTGCAGAAACTTCTTTGGAATTTTAACTACATAC TTGGTCTCGAACTAGAAAGTTTCCTGGATGACGCTGGGATTTATTATAGGATTGCAGGCATATTGAAATCAAACTAGTCT GGATATATCATAATAGGAGGATGATTGGGAGTGAATCCTCGTTGTCAGGTCTCTTAGGAGAAGGCTCCAAGTGAAGTTCT CCTGCAAATGCCCTATGGAAAACAGAACAGAGAAGGCTCTGTGTTCTTAAGCATTTTTCAGGAAAACTGAAATCTACAAT TTTAGGACCTTGTCCCCAAATAGTTTTGACCAATCAAATCAAGTACAAAAGATCAGGAATTAGAACATCATTTCCTAATA CGCTAAATTAGAGAAGCAAAATAGGCCTAGTTAAACTAAACAAGGAGACAAAGATTTTTCCCAATATGGTTACGATTTGA ATATTTTGAATCACATGGAGGTAAACACATGACTAACAACTATTGCTTGACTACCTCTGTTTTTTTTTTAAAAAAAGGCA CTTCCTCCCTCTGGAATGAATTATTGCATATTTCTGTTGCTATAGAAATTACTGGTTTTCCAAATGACTATTCTATTTTG CTCCTAAAGTGTGTAATATGAGATTATGCTGGTTGCTATATTGAAGTACAGGTGGAATGTTGGCCAGCTAAAATATCATG TATTCTTGGTAAACAAACTGATTTGAATGTCAAATGCTAAATTGAATTCTTAACACCATATAGGAAATGCCTTCATCCTG TTTTTAGCAAACTCTTCCAAATCTGCCTCCCACAATATTTTTTTTATCGGCCAATTTTTATTTATTTTTCCTGGGGAGAG GTTTTTTATTCCCTGCACCTGCCTCCCACAATGTATACTAATAATCTAAATATGTGTCTTTTACAATCCATCAATGTCTA CTAATCTATTTTTGTTTTAATATATGTCATTGCAAATTTAGTTTTGTGTATATAGACACAGTAACTGAGTAAGTATAACT TTGGTTCTCAATTAATTACAATAACATATGCAGGTTTATTGAGTTATTGCATTAAAAAATAATATAACAATCAGATAACT GTTTTTGAAAAATCTGTATTTGATCATTCATTGTGTAATCTATTGTGCAGAATAAATGGAAGATTCGTCTTCAACTCACA AAGCCTGTAACTTGGCCTCCATTAGTTTGGGGTGTAGTTTGTGGTGCTGCTGCTTCTGGTATTAAATTTTAGCATAAGAT TAAAATTTGACATGCATGGTAAACAAAAAAATTGGTCCTTCTTTTTACTATGATAATTGTTTAGAAACATTCATTTTATA GTCCTATTTAATGCTTCATCGTCAGGGTATACATTCATGTATGCGATTCGATACACCTTGTCAATATTCTGAACCAACTA TGCCCTTTGGGGCTTGGGCAGGAAATTTCGAGTGGAACTTTGAGGATGTTGCTAAATCAATCATGTGCATGATGATGTCT GGCCCATTCCTGACAGGATATACACAGGTAGTACTTTTTGTTGATGTAGAGTTTTATCAGCTGCTATTGGATGGGAGTAT AAACTTACATAACATTGAATTGTGGGCTGTTAATTGTAGACTCTGAATGATTGGTATGACAGAGAAATCGATGCAATAAA TGAACCTTATAGACCAATTCCTTCTGGGGCAATATCTGAAAATGAGGTATCATCTAAATCTGAGACTATATGTTCTTTCC TTTTGTTACTTTCTTTGTTTTTTTATTTACTTTCATTTTTTGGCTCAAATTTCCGCAGGTAATCACACAAATATGGGTGC TGCTACTAGGAGGTCTTACCTTTGCTGGTATATTGGACATATGGGTGGGTACTGTAAACAATAACCCCATGATCCATCTC TTGACTGTAAATTATTAGAAGCATGATTGCTAAATTCTTCTTTACAGGCAGGGCATGATTTCCCTATAGTTTTTTACCTT GCTCTGGGTGGATCCCTGCTGTCATACATATATTCTGCACCTCCTTTAAAGGTAATTCTTTTACAAATTTCTTCATGTTT TTAATATTTTCTATTCATTTTGCCTTTAATGGTCATTTGACTAAGTTCTACATGTTTCTCTAGTTAAAACAAAATGGATG GATCGGAAACTTTGCCCTTGGAGCAAGTTACATTAGTTTGCCATGGTGTGGTATCTTCTACTTTGATAAGCACTAGTTGT TATATGTTTAAACTGTTATCCTTATGAACATTTAGTGTATTGTTAATATGAGTTGCTGAACATGAATAGTACCTAGCTCT TATTTGCAAGATGCAACTGATAGGCCAATGAAATATTTTTTTAAGAATATTTTAAAAATTTAATAAAAAAGTTATAGCTA TTAGATGGAATTTACTTTTGGAATATGATAAGTATTTCAGTAAAAGATTAACTAGGGTAACCCTGAGCCATTTCATGCAC AAAGAATTTGATAAGAACCTTAGGAGAACCATACCATAAAGCTAGCCGCTGCTAGTCCAATGTGGGACCCAAATCCTATA CCTTGCAATCGGTTCTTAACAGCTGCACAGCCCCGGCGCCCACACAGGGGTGGCTGTGCACTAGCCCTTTCACTAGTTTG GGCAAACACTGCAATGCCGGTGTCACCACCGGCGCTGTAGTTAGAGAGCCCAGGGCCTTATAGACCCCACATTATAATCC TATACTTCCAATGAGGGACCCAAGTCCCATGCCTTGAGCATGTTTGGATATCAGTTGGTTGAACTCAAAAAAACCAATTT CCTCTTCCCAACACATAAAAGCCAATGGAACCAAATGGATGGATTGAGGGAATGTACTTTTACTTGTTTTCAAATTTTAA GCAAACTCGCACCTTGCAATTGAGTCTTATCAGAATTATGATTAATCTGATCTTATTTGATTTCCTTGGGAGTTCATTTA TCTGATTTGCACTGTGTTTCAAAGGGCTTGATCAATTTCTCATTGACAGGTGGGCTGGCCAGGCTTTGTTTGGAACTCTT ACACCAGACATAATTGTTCTCACACTCCTATACAGCATAGCTGGAGTAAGTAGCATGTTACTTTGCACTTTGTTAGATTG ATAATGTGTCAAACTGTTACCTTAGACTAGTTGTTAATCCTGTTGGTGATTTGCTGTATCACATTGCAGTTGGGAATTGC CATTGTCAATGACTTCAAAAGTGTTGAAGGGGATAGAGCTCTAGGACTTCAGGTATACTATATCATTATCCTTTCCAATA CATCTAAACTCACTTTTATTGTCAATGACTTCTACTTTTAAGTGTTCCAGAAATTTTAATCATTGAAGTAGCTGCTGATT TTTCTATTGGCAATCTTCTTTGAATAGTCTCTTCCAGTTGCTTTTGGTTCTGAAACAGCAAAATGGATATGTGTTGGCGC AATTGACATTACACAATTATCTATCGCTGGTAAATTTTGATCCCCTTGTACTCTATATAGTGATTTGACTGTTCTTCAGG ATACTAAAACAAAAAGTTGGAAACTTTTCACCTTAATCATCATCCTTCTACTATTTATTACTTGTGGATATTCAACAACA ACAAAAACCTTATCCCACTTGTGGATATGTAGAGATTAATTAAATTTCAGATGAAAACGGAAAATGACACATCTTGATGT GCTACTTCAACAAAAAGTGTCCCTAGATATGCATTTTTTCTGTTGTTAAACTTCATAACTGATTAAACGAGCTCAAAGTT CTGGTAAAGCTGTACTTTTATAGCAACCAAGAGTTAATTTTTGAATTAGAAACCAAAACTGGGTCTGCATTCAAAGAACT TTACTGATATTTTACGGTTTCAGGATATCTACTTGGGGCTGGCAAACCGTATTATGCGTTGGCTTTAGTTGGCCTAATAG CTCCACAAGTCTTTTTTCAGGTAAAGTACACACAGTGGCATGCATGATGTTAGAAAATTAATTGCAATCATGTTACATAA CGATTTAGAGATAAGATCTTCTAAATTGTTATTTCTAAATTCGTGTTAGCATCTCATTGGTCTTATCATCTTGTGCCTTG CAGTTCAAGTACTTCCTCAAGGACCCTGTGAAATATGATGTTAAATATCAGGTATATATAACCACTTAGTGCCTATTTAT TTGCTAAAAATATTTTCGGTTACAGTTAAATAAAAGTGAGTTTAGATGTATTGGAATGTGTGCAATCCTGTTTTGAGTAT TTTTCTATCAAGTGAAAGTGGGTTTTTAAAATATAATTTTATCAAAAACTTGATTTTACCCCATATTTTACTCAATTTTA AAACAAATAGACCCTAAGTATATGTTTGTTTTGACATTGGACGTTTTGCCTACAACTTGTTCCTTATGGAAATTCTTACT GACAGAAGAACGCCTTAGATTTCAGCTTCTAAGCTTATATACATCAGCATTACAATTTAGTGGGGGAAACGATACCACCG TCATGTGAAACCATTATGAATAGATCTAGCATGTTATTAATTATGCCTTTCATGTTTCCAGGCTAGTGCTCAGCCATTTC TGGTGCTCGGACTATTAGTTACTGCTCTAGCCACTAGTCACTGA
CDS sequence (LotjaGi1g1v0443300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCTTCATAGTTTCTTAGCAACCAACATGGTTATAGTTTTCATTTTTGTAAGTGGGTCTGAAATTCTTGGTGTTTA TGTGGACATTGCAGGGAGAAGATTAACAGTTAGAGCAGCAGAAACTGATGCAAATGAAGTTAAATCTCAGGCACCGGATA AGGCACCAGCTAAAAATGGTTCAGCCTTCAATCAGCTTCTTGGTATCAAAGGAGCTTCTCAAGAAACAAATAAATGGAAG ATTCGTCTTCAACTCACAAAGCCTGTAACTTGGCCTCCATTAGTTTGGGGTGTAGTTTGTGGTGCTGCTGCTTCTGGAAA TTTCGAGTGGAACTTTGAGGATGTTGCTAAATCAATCATGTGCATGATGATGTCTGGCCCATTCCTGACAGGATATACAC AGACTCTGAATGATTGGTATGACAGAGAAATCGATGCAATAAATGAACCTTATAGACCAATTCCTTCTGGGGCAATATCT GAAAATGAGGTAATCACACAAATATGGGTGCTGCTACTAGGAGGTCTTACCTTTGCTGGTATATTGGACATATGGGCAGG GCATGATTTCCCTATAGTTTTTTACCTTGCTCTGGGTGGATCCCTGCTGTCATACATATATTCTGCACCTCCTTTAAAGT TAAAACAAAATGGATGGATCGGAAACTTTGCCCTTGGAGCAAGTTACATTAGTTTGCCATGGTGGGCTGGCCAGGCTTTG TTTGGAACTCTTACACCAGACATAATTGTTCTCACACTCCTATACAGCATAGCTGGATTGGGAATTGCCATTGTCAATGA CTTCAAAAGTGTTGAAGGGGATAGAGCTCTAGGACTTCAGTCTCTTCCAGTTGCTTTTGGTTCTGAAACAGCAAAATGGA TATGTGTTGGCGCAATTGACATTACACAATTATCTATCGCTGGATATCTACTTGGGGCTGGCAAACCGTATTATGCGTTG GCTTTAGTTGGCCTAATAGCTCCACAAGTCTTTTTTCAGTTCAAGTACTTCCTCAAGGACCCTGTGAAATATGATGTTAA ATATCAGGCTAGTGCTCAGCCATTTCTGGTGCTCGGACTATTAGTTACTGCTCTAGCCACTAGTCACTGA
Protein sequence (LotjaGi1g1v0443300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLHSFLATNMVIVFIFVSGSEILGVYVDIAGRRLTVRAAETDANEVKSQAPDKAPAKNGSAFNQLLGIKGASQETNKWK IRLQLTKPVTWPPLVWGVVCGAAASGNFEWNFEDVAKSIMCMMMSGPFLTGYTQTLNDWYDREIDAINEPYRPIPSGAIS ENEVITQIWVLLLGGLTFAGILDIWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQAL FGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGSETAKWICVGAIDITQLSIAGYLLGAGKPYYAL ALVGLIAPQVFFQFKYFLKDPVKYDVKYQASAQPFLVLGLLVTALATSH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| TMHMM | 6 | 28 | 23 | - | – | |
| Phobius | 6 | 28 | 23 | - | – | |
| Phobius | 29 | 167 | 139 | - | – | |
| PANTHER | 31 | 369 | 339 | 3.0E-218 | – | |
| PANTHER | 31 | 369 | 339 | 3.0E-218 | – | |
| TIGRFAM | 65 | 369 | 305 | 5.3E-186 | ||
| TIGRFAM | 80 | 366 | 287 | 5.9E-111 | ||
| CDD | 82 | 364 | 283 | 2.70669E-149 | ||
| Gene3D | 90 | 249 | 160 | 7.8E-10 | – | |
| Pfam | 92 | 340 | 249 | 1.2E-38 | ||
| Phobius | 168 | 186 | 19 | - | – | |
| TMHMM | 168 | 186 | 19 | - | – | |
| Phobius | 187 | 191 | 5 | - | – | |
| TMHMM | 190 | 212 | 23 | - | – | |
| Phobius | 192 | 207 | 16 | - | – | |
| Phobius | 208 | 218 | 11 | - | – | |
| TMHMM | 219 | 238 | 20 | - | – | |
| Phobius | 219 | 236 | 18 | - | – | |
| Phobius | 237 | 247 | 11 | - | – | |
| Phobius | 248 | 269 | 22 | - | – | |
| TMHMM | 248 | 265 | 18 | - | – | |
| Phobius | 270 | 289 | 20 | - | – | |
| Phobius | 290 | 311 | 22 | - | – | |
| TMHMM | 309 | 331 | 23 | - | – | |
| Phobius | 312 | 316 | 5 | - | – | |
| Phobius | 317 | 338 | 22 | - | – | |
| Phobius | 339 | 349 | 11 | - | – | |
| Phobius | 350 | 368 | 19 | - | – | |
| TMHMM | 351 | 368 | 18 | - | – | |
| Phobius | 369 | 369 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Chlorophyll biosynthetic process | The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transferase activity, transferring alkyl or aryl (other than methyl) groups | Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor). | ||
| Molecular function | Chlorophyll synthetase activity | Catalysis of the reaction: chlorophyllide a + 2 H(+) + phytyl diphosphate = chlorophyll a + diphosphate. |
Expression pattern of LotjaGi1g1v0443300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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