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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0447200 |
| Transcript ID | LotjaGi1g1v0447200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/LRR protein; TAIR: AT3G48880.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9M2Z5|FBL53_ARATH F-box/LRR-repeat protein At3g48880; TrEMBL-Plants: tr|G7KZ81|G7KZ81_MEDTR F-box/LRR plant protein; Found in the gene: LotjaGi1g1v0447200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:94600639..94604400) extracted from Lotus japonicus Gifu genome v1.2.
AAACAACCTCAGGATCAAAACCAACCAAAGAAACCCAAGACAAAACCAGAATTTTTCCCCTAAAGGATTCTCCTCTTCAG GGTTTCAAGGTCCTCTCATATCCAATAATTGAGTTCATACCAGTGCAACTGGCAAGGTACATGTTCTAAAATCTAGAATT GATGTATTTTTTGTATCTGGGTGTAAGATAACTCTGACATTGAGTCAAATGAGTAGCCTTCTCTCTGATTTTCTCTCTCG AAACTCTTTTGACGAAGATCTGGTTTGGGTGGCCTCTACGCCGCCTCCCTGCATGGTGGCTACCCCATCCTCCCCGTTCT ATCTCATTTAGTCTTCCCTCATTTCCTTGTTCATTTCCCCTTTCTCTGTCGCTTTTTTATTTTGGAGATCTCTATGTCAC CACTCCATTTTCTCCTTTCCCTACTCAGATCTTACGTTTTTCCTCCATTCTCTATTCAGATCTAAGGTGTCAAAGAATGG GTGTGGCAGATTTCTTCTCTAAATTTGCTGGTTCGTGGACCAATTGGTGAGATTGGGGTTTTGCGGTTGTGTCTAAGTTA GATTCGCTGGGTTTCGTGGTTTTGGAGGTGCTCCTGTTTCTGGTATTGTGTGGGTGTTGTTTTTGGTGGTTTCAGGGGCT TTTACTTGTGGTGAGGCGGGGGTCTGTGGTCTTTGTTGAGTCAGATCTGAGTTGTTTCTCACAATGGATCATTAGGGTTT TGGTTCTCTTGTGACTCTCAAATGTTTTCCTCTTGTTCGGCGTGTCTCTTGTTGTTTCAGATTCACTGACACTCCTCTCT AAATCTTTAAGCTTTGGGTGCTATCTGAAGTTGCTCTCGGGTTTGTTGGTCTTCGGGTTTTGCTGCTCTCTGCTTGTCAT GCCTCTTAATGTCGAGAGGGGGCTCTGCTTTGTGATGATTTTTTGATCCTTGGATCTCGTCATTGCATCTCGGTCCCAGA TCGAGTCCCCCTATTGGTGGTTGATGTGTGCCTGATCTGCATCTTTGGGTTTTGGGGGTGTTTGTTTTTAGATATTCATG TTGATGGGTTTTGCGAGTTTGTTGTTTTTGTTTGGTTTTGTTTTTGTTGATCCATGAGTTTTTTCGTGGTTTTTTGATTC TTTTGACGTTTTATCATTCGTTGTTGGAATTTCGTTCAATCTACGTTGTAAATTTTATTTTGTTGGGTCTATGTATTTTA CAATATTTTTCAAGAATTCGCCATTTCTATATATATCATTTCACCGGCCTTTGAAAAAAAAAATATTGTAACTGAGTGTT CTAACCTTCCTCATAAAGAGAGGAAACTCCCTCTCATGAGGCTCCCTATACACTCTAGTTGAATTCATTTCTCATCTTTG TTTAGTTTTACTCATCCTTTAGATAGGTTTTATCTTATTTATTCTCGCTCAATCTTGCTCTTGAATGAAATTCTCCTAAC GTTTATTTGTATTTAGATAATTCTTCTCCAATTTCCCAAATTCATTGCAATAGTACCTTATGACTTGAAATGATACCAAC ATGCAATTTTTCTCTGCTTGATCTATATTTTTGCACATATAAAGTGGAGGGTATTAGTCTTGATTGTTTTTTGAATTTTC TAGAAATTTCACACTATATTTCTTTCATCTATATTTGTGATGTTTTTTTTTCTTGATTATTACAATTGTATCATCAAAAA CTATATATTGTAGCTCTTTCTCCAATATTACTAGATTATTCTAGATGCTTCACATGAATTTATAAAAAATTTACTAATAT CCAACTGTCTCATGCAATACATAGTTTCTTCTAGATTTCTCTAGAATGTTCGCATCATTTTTTTTTCATAATTCTGAATA CTTAATATGTTAACACTTTATATTCTATATGTCTCATATGTGTTTCCCAATCCAAGAATAAGAAAGGAATAGAATCAATT TTCATGCTAAAACTATAATCATCTTAATTAGGATATATAGACAAAGTTCAAATACATTTAGACCAATTGATAATTATTTT TATTTTATTTTCTAATTATTAGGTGTCGTACATGATATTTGAATTATGATGTATTGATATTTTTTAATATTTACATATCT AGGTTCATGATAACTAACAAATTCATGTAAAACATTAACGTGTCTAAGTAATAATTCATGTAGGAAACTTCAAGTAATGA AGAAATCCAGCTCATCTTCTAGGTACTCAAATGACTATTTGAACTATGACATTCTGGTGAGAATTTTTATGACCCTCAGT ACTGCAGAGCTACTTGTTGTCCCGCTGGTTTGCAAATCTTGGATGCAGGCTAGTCGTAGTCCTTCACTTTGGAATAAGCT TGATCTTACTACACTCCACTCTAGCATTCACAACGTTCCGAAGATACGAAATACTTGGAATGATATATGTTCACAAAGAA AATTGGATTTACTCTTGAAGTTTGGTGTAAGGCTAGGCGGCGGTGGAAACATAAGATGCTTAATATTCAATTACTATGTT TACTTAAGTGACTTCCATTTAATCACTGCAGCTGAAAGGTAACATATTTATCTTACTCTTTTGTATATTTTTATGTTGCA TAATACTAAAATTACCATATTTAATTATTTTCGTGACCCAGTTCATTGTCTCTTCAATGAAAGTATAATATATTTGCAAA AAAAAAAAATTATTTAATCTTTCTCTTAATTATTTATTTTTGTAAGTGTTATACCATTATTGGCTGACTATCTTATGTGC CATTTTTCTATCCTTCTATTGAATTGTTGACATGTTAGTTAAAAAATGTGAGTGAACTGGTTATAAATTTATAGAACTGT CGTACCTTTTTATTAATATATTAACATTTCATTGGTGGGAATGGGATATACAAATATGAGAGTCAATTTGAGGACATGAG ATCGAATTCAATATGTTATTAGTATTAATGTGACATCAACTTGGACACTATATATATAACTGATTTTAATCAATGTTACA CATGACCTTATGACCAAACACCATATGACCTTAGTATATTTTAAATTGTGTCCTATTTTATTTGTAGGACACCAAATCTC CGACGACTAGTTTTTCCAGATTCAGGCTACCTATCAAAAGATGGAATCTACAATGCAATGAGATTATGGGGAGGTCTTGT GTCAATGACTATTACCTCCATTGTCAACCGTCCTTACATGTTTTCAGCAATTGGAAAATATTGCAAGAATCTCTCTCAAC TGAAATTGACTTTCAACTTTGAACAACGTCATGCTGATGCCTTGGTTAAACACACCCCAAATTTGATGATCTTGAGTATC CGGGACGTAACAGTGAATTTGAGAGCTTTGTGCCATGTACTCAAAAACATGGAACGTTTGCTGTTGGTAAATATATGTCA TAGTATCACCATTTGGGATAGACCAGATGGTTCCATTGTGCTTTATGAGGTCAAAAGTTTGACGAATCATTTGAGCATCT CCTGCCTGAAAAAGATTATCTCTTGTGAAGTAAATGGGTTTTGCAGATGTCAGAGGCCTAACTATGATCCAAGAAGGCAT CCAGATGAAAAATTTGAGGATATTTGGCGTTATGATGAAGTAACGTGTCTTGGAATTGATTAGTTCTATCGAAGGCTTCA AGAACCTTGTCTTGTCCAAACTATTTAATTCTCGTTTTTGTTTACTGAATAAGCTTCGTAAACATTTTATTGGCTTTAAA TTATGGATGATTGATTCAGTTTGCATGTATCATTTAATGGGTTAAAGATTTTATTATTGTTAATGGTGATTTGAGTAAGG AA
CDS sequence (LotjaGi1g1v0447200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAAATCCAGCTCATCTTCTAGGTACTCAAATGACTATTTGAACTATGACATTCTGGTGAGAATTTTTATGACCCT CAGTACTGCAGAGCTACTTGTTGTCCCGCTGGTTTGCAAATCTTGGATGCAGGCTAGTCGTAGTCCTTCACTTTGGAATA AGCTTGATCTTACTACACTCCACTCTAGCATTCACAACGTTCCGAAGATACGAAATACTTGGAATGATATATGTTCACAA AGAAAATTGGATTTACTCTTGAAGTTTGGTGTAAGGCTAGGCGGCGGTGGAAACATAAGATGCTTAATATTCAATTACTA TGTTTACTTAAGTGACTTCCATTTAATCACTGCAGCTGAAAGGACACCAAATCTCCGACGACTAGTTTTTCCAGATTCAG GCTACCTATCAAAAGATGGAATCTACAATGCAATGAGATTATGGGGAGGTCTTGTGTCAATGACTATTACCTCCATTGTC AACCGTCCTTACATGTTTTCAGCAATTGGAAAATATTGCAAGAATCTCTCTCAACTGAAATTGACTTTCAACTTTGAACA ACGTCATGCTGATGCCTTGGTTAAACACACCCCAAATTTGATGATCTTGAGTATCCGGGACGTAACAGTGAATTTGAGAG CTTTGTGCCATGTACTCAAAAACATGGAACGTTTGCTGTTGGTAAATATATGTCATAGTATCACCATTTGGGATAGACCA GATGGTTCCATTGTGCTTTATGAGGTCAAAAGTTTGACGAATCATTTGAGCATCTCCTGCCTGAAAAAGATTATCTCTTG TGAAGTAAATGGGTTTTGCAGATGTCAGAGGCCTAACTATGATCCAAGAAGGCATCCAGATGAAAAATTTGAGGATATTT GGCGTTATGATGAAGTAACGTGTCTTGGAATTGATTAG
Protein sequence (LotjaGi1g1v0447200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKSSSSSRYSNDYLNYDILVRIFMTLSTAELLVVPLVCKSWMQASRSPSLWNKLDLTTLHSSIHNVPKIRNTWNDICSQ RKLDLLLKFGVRLGGGGNIRCLIFNYYVYLSDFHLITAAERTPNLRRLVFPDSGYLSKDGIYNAMRLWGGLVSMTITSIV NRPYMFSAIGKYCKNLSQLKLTFNFEQRHADALVKHTPNLMILSIRDVTVNLRALCHVLKNMERLLLVNICHSITIWDRP DGSIVLYEVKSLTNHLSISCLKKIISCEVNGFCRCQRPNYDPRRHPDEKFEDIWRYDEVTCLGID
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 3 | 300 | 298 | 2.1E-89 | – | |
| PANTHER | 3 | 300 | 298 | 2.1E-89 | – | |
| Gene3D | 13 | 49 | 37 | 1.8E-9 | – | |
| SUPERFAMILY | 14 | 83 | 70 | 5.49E-11 | ||
| SMART | 15 | 55 | 41 | 0.0015 | ||
| Pfam | 18 | 57 | 40 | 4.2E-7 | ||
| Phobius | 20 | 39 | 20 | - | – | |
| Phobius | 40 | 305 | 266 | - | – | |
| Gene3D | 50 | 267 | 218 | 1.1E-8 | ||
| SUPERFAMILY | 96 | 245 | 150 | 5.3E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0447200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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