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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0450500 |
| Transcript ID | LotjaGi1g1v0450500.1 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Thioredoxin; TAIR: AT5G08290.1 mRNA splicing factor, thioredoxin-like U5 snRNP; Swiss-Prot: sp|Q9FE62|YLS8_ARATH Thioredoxin-like protein YLS8; TrEMBL-Plants: tr|B8BHK6|B8BHK6_ORYSI Uncharacterized protein; Found in the gene: LotjaGi1g1v0450500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:94959043..94963438) extracted from Lotus japonicus Gifu genome v1.2.
AGGACGTTGGTAAGAAATTTGATTTGAATCTTCATAGTTGTTGTGATTTTGGTTGTAAAATGGGTTGTTTGAAGAATTCT GGGTGTTGAAATGGTGATTGTTGGGATCCATTTCAATACAAATGCTAATAGATAGATAAATAAGATGGTGAGAGAGATAA TAAGAGAGTGAAAAAACTTGGTTTTTTTTTTTCTGTGTCCAAATCAAACGAACCAAGTCTCTATTTATAGAGAGAAAAAA AATCATGAATTTTGGTATAATTTTTTTTTCAGAAAATTTTTTTTTATGAAATAATTGAGTTCAAAGGATAAGAAAAAACG AAATCTGGAGCAACCAATTAGAGAAAGCCACGTGGCAGGAGAATAAAAAAAAATTTCTCTTTCCTGCAGACGCGCCTTGT CTGCGCATGTTCTACACGCGCCTGCGGTGGCCACTGGCCTCGCGCCACGTGGCACACCGCAAGCTCTTTATTTTTGTTGA AAATCTTCAATAATTTTATTCTCTCTCTTCCCTTTCAACCAACTTCAACAACCACTAAACCCCCTCAACAAAATTCAACA ACATTAAACAATCAATTCAAGCATTCTAATAAGTGAAAGATATCAATCTTTATCTGTCTTGGATGGAGAAAGTAAATTAA ATGATTAGAATAAGAACCTATTAAGCATTTCTTTTGAGTTTTGAGCCTAGTCCCCTCTTCAATCTTAACCGAGTTCGCAT CGCAACGCAGGTAATTCTACTTGAACCTTTCTCTTTCGGTTTTCAACAATACTTAGCGAATCTTCCATTTGCAAGCAGAA AAAATTTAGATCTTACATTAAGGTCTCTAATACCATAGGTTTACGTAACTTTACTACTGAACCTGATTGAATCAATTCCT TACTATTGAATTTCAGGTCTTTTGAATTTTGGGTATCTAGAAAACTTAATCCATCACGGTTGGGAATTTTTGTTAACGGA ATTCAGTTCAGTTCATCATTAGGTTGGAGATTTGGCAACTTTTTCTGTTTTATTTTGTTGAAATCTGTCCAACAAATCTC AATTTACAGTTCCACTTGGTAATTTGTTTGATTTTCGAAAGACGAGGGTTTCGCTGATAATGATATGTGAGCAACATGCT CACTGCCACTATTAAAACTCATATATATGCCTTTTTGAACTGGGAATTTAATCTTCATCTCTTGTATCAATTCATTTGCT GATTTCTAGCTTTAGGTTCATATTTTTCTGGGTTTGTTCTCTTGGGGGTTTAGTCTTGCTCAATTGTGCTATCTTTACCA CTAATTTATACATGGATTCTTTATTTTATGGTAATGTTGATAGCGAATCCGGTTTCTTTTGGATCAAATTTCTTCTAGTT ATTTTTTAGTTGCAAGGATCTCTAGTCTGTTTCTAAGCTTCATTTATTCTCCATACTGGTCTTGTCATTTGTCAACTTGG TCAGCTTGATAATTATCATTCTATTGATTCTTCATCTTCAAATGTTCAATCTCTAGGTTCTTTTCTCTTGAAGGCTTGAA GGATGTTACCAACTTGAAACAACTACTTTCCTTATCTTTCAATGCTATCGATAACTTTGAGCATGACTGACTTCTTCTTT ACTCGATCAGCAGCTAGAGAGCACTTTTTTCTGTCAGTTTTGAAAATCTGGGATGCCACTTTCAACATAATGAATCTGCT ATAATGACAGACTCATCTGCTCCTTCAAGCTCATTGGACGTATTGTCCAGAGACTACTATAATATGTCTTGCACTTCTTG TGGCCAAAGTAGAACTTATAAAAGACTTGGGCTTGAGTTAGGTCCGGTCTAAATTCTAATATGGGTATCGTAGGACCTGG TGCTACGGAGTTTGATCTATGTTGCCGCAGTATTCTAGTAAAAAAATTGAACCTCATCAACTTAAGCTTTTGATATAGTT GATCTGTGACAGTTCTTAATTTGTGTTAGTTGGCTTTGCTTTTCGATGTATCTCGCTCAATGAAGCGTGTTTATACTGCT GCCACAGCTTATCACTAGCAAATTTCACCATATTGATTTCAATCCTAATGAGTACTTAAAGTTAAGCATGCACAGTTGAT TAAAGCTAGTTCAGTTCCTTAATGCTATTCACACCAGAGAAATTCTCATGTCACATTTTAATTCTTTACAAGACATCCTT GACCTCAAGGAAATTAGTCAAGAGATTTCTGTTTGATCTGCAACCATGGTTCTTGAATAGCATTTTCGTCAGCTGTGTTC CTTTGAACTATTTTCTGTTATTCATTAACATCATGTTTCTTCACTACAACACAAGCGTCATATGCCAGTTCTTGATTTTA GGTTGATATACAGCTTTTATTGAATGAAATTGCATTAACTAGTTTAGTACTGTAGTATAATATAACGTCTTAACTTTTTG TTACATGTTAAGGTGGATGAGGTGATGACATGATGCTATTTCCGGTCGTAGTTAAATGTAGCCACAATGCGGTTGTGTGG CTGAGTAGTGTTGTTTGCGCTAGTATTATGACTTCGAACAGGTTCTACATTTTTAATATTTGTAAGCAATAAATCAAGTT AATAGCAAATAAAATATGTTATATTATAATTAGTTTTCATCATTTTTTGTGTGTGCCTAAATCTATGTATTTTCTTAGTT GAGTTAGGTAAAACCACTATGAGTGACAAAACTCTCTCTTCAAGTACTTATTGCTTCTACATTGTTTAGTACTTACTCCT AATATTAGTTGGCATGTTTGTTTCAGACCTAATAAGAGAAGGGTGCAGATATGTCGTACCTGTTGCCTCACTTGCATTCA GGATGGGCTGTGGATCAGGCAATCCTTGCTGAGGAAGAGCGTCTTGTTGTCATCCGCTTCGGTCACGATTGGGATGAGAC CTGCATGCAGGTATTTATTGAGTCACTAGTGAAATTAGTTCCATATGCACATTAGAGTTTGAATGCCAGAAGTTCCTCAA TGTGTATTTCTTCTATTAAATTAGCCTTCACAGAAGTATTTTGGGATTTATTTAACTAATTGAACATACATTAGTGACTG ATTTGAAACATGCCCGATTCTTTTAGATACATTGACATAGTTTCTATCATTCAAAAGCTAATATGATGGAGGCCTTATCT TATAGGTTATGCTTGATTGATAGAAAGAAATGGAATTGAGTGAAATGACATGGAATCTAAATGTTGGATATTTAAAAATA AGATGAAATATAATGGAAACCATGATAGCTTGCATTCCTTTCCATCTGATCTCATTCTCTCTAATATCTCTCTTTTTCTT CCTTCCAACTTTAGAGTAATGGACCTAGGTTTTTTCTTCATTGCATCATAAAAAAATATCCAAAAGGAACTTTTTACCAG AAAGTTGTACTAATATCCAAATAGAAATAGTTGAATGATAATTCATTTCCATTGTGATTCATTTCACTGCATTCTATTTC CCCTCATTCCAAACATAGCCTTCGAGACTAATTTAACTATTTGCTCCTGATCATTCATTCAAACTATTCATTAACATCTT GTTTCTTCACTACAACACAAACGTCATATGCCAGTTCTTGATTTTAGGTTGATATAAGCTTTATATTGAATGAAATTGCA TTAACTAGGTTAGTACTGTGGTATAATATAATGTCTTAACTTTTTGTTACATACTAAGATGGATGAGGTGCTGGCATCGG TTGCGGAGACAATAAAAAACTTTGCTGTAATATACCTTGTGGACATCACGGAGGTACCGGATTTCAATACCATGTATGAG CTGTATGACCCCTCCACTGTTATGTTTTTCTTCAGAAACAAGCACATCATGATAGATCTTGGCACTGGTAACAACAACAA GATCAATTGGGCTATGAAGGACAAGCAGGAGTTCATTGACATCATTGAGACCGTCTACAGAGGGGCAAGGAAGGGACGTG GTCTCGTCATTGCCCCCAAAGATTACTCCACCAAGTACCGTTACTAAAAGCATATCTCTTCCAAAACTATAGTAAACTCT GTATTTGCACTCTGCTGCAAAACCTGATTCAAGATTTTACTATCCCGTATGCCTATTGTGTATAGGACTATGAGTGTGAC TGTCATTCAGAATATTAAACTTATCTGTCTTCTTAAACTATGACTAGTCTGCTCTGTTCTGCTAATGTGCCACATGTCAT TTAGGTAATTGCTTAGATTGTTTGAATAGTTTTATTTTTATGCATGGGTGACGACGTGATGTAAAGAATTTTTACGTTGT CGACCAATCACAATTCAATAACATGGGAGAGATAGTATTTTACTTAATTTATTTATTAATTTAAATGAGTTAATGTGGGA GAGACAAAAGAGTTTATCCCAAATGAGTTAATATTTTACTTAACTTATCTGCCTTAACATGGGAGAGACAAAAGAG
CDS sequence (LotjaGi1g1v0450500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTACCTGTTGCCTCACTTGCATTCAGGATGGGCTGTGGATCAGGCAATCCTTGCTGAGGAAGAGCGTCTTGTTGT CATCCGCTTCGGTCACGATTGGGATGAGACCTGCATGCAGATGGATGAGGTGCTGGCATCGGTTGCGGAGACAATAAAAA ACTTTGCTGTAATATACCTTGTGGACATCACGGAGGTACCGGATTTCAATACCATGTATGAGCTGTATGACCCCTCCACT GTTATGTTTTTCTTCAGAAACAAGCACATCATGATAGATCTTGGCACTGGTAACAACAACAAGATCAATTGGGCTATGAA GGACAAGCAGGAGTTCATTGACATCATTGAGACCGTCTACAGAGGGGCAAGGAAGGGACGTGGTCTCGTCATTGCCCCCA AAGATTACTCCACCAAGTACCGTTACTAA
Protein sequence (LotjaGi1g1v0450500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPST VMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 142 | 142 | 1.4E-107 | – | |
| PANTHER | 1 | 142 | 142 | 1.4E-107 | ||
| PIRSF | 1 | 142 | 142 | 2.0E-75 | ||
| Gene3D | 1 | 141 | 141 | 6.9E-76 | ||
| SMART | 4 | 136 | 133 | 1.3E-97 | ||
| Pfam | 4 | 136 | 133 | 1.9E-67 | ||
| SUPERFAMILY | 4 | 137 | 134 | 4.28E-36 | ||
| CDD | 10 | 123 | 114 | 3.94244E-77 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
| Cellular component | U4/U6 x U5 tri-snRNP complex | A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins. |
Expression pattern of LotjaGi1g1v0450500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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