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LotjaGi1g1v0454200.1

Overview

Field Value
Gene ID LotjaGi1g1v0454200
Transcript ID LotjaGi1g1v0454200.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description TATA-box-binding protein; TAIR: AT1G55520.1 TATA binding protein 2; Swiss-Prot: sp|Q42808|TBP_SOYBN TATA-box-binding protein; TrEMBL-Plants: tr|I3SW52|I3SW52_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0454200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:95524644..95529349) extracted from Lotus japonicus Gifu genome v1.2.

TATAAATACAAAGAGAATGCATAGTTGACAAAACAACCCTAGCCTCTGTTTTCGTCTGCATAAGCGATCAGATTCTTCAG AAACTCTTCTTACAACCCCAATAAATCTCTCCCTTTATAAACCCTCACATACAAATTCTCACACCACTTTCTTCCCGCTC TTTCACTTCAATTCAACTCTTCAATCTCTCAGATCTGTGAAGAAGAAGAGTAATCAAAAAAGAAAAGAAAAAACCTAGAT CTTGCTTGTTCTCACAATCATTTACCCAGAAAACAAAGAAATTAAGGTCTGATATTCATAGCAAACTTGTTAATCATTTA ATTAAATCATATAATTTTTGTAACGTTGATATCTAATTCTTCATACTCAGATTTCCCCCAATTTCAAAAAATTTAATCCA AGGTTTTTTAGACTTTTAATCTTGTTTTCTTTGTTTGTATGACAAATTGAGATCTGGGTTGTTTTCAAAATTTGTTTTTT CTGCGTGTGTTGATATGTTGAGAGGGAAAGTGAAGGCTTTTTGGTACTGATTAGTGTTGAATATGCAGCTTTGTTTGAAG GCTAGAGTAGAGAGTAAGGTTAAATTGGATCATCCATGGCTGAGCAAGGATTGGAAGGGAGCCAACCTGTGGATCTTCAG AAGCACCCTTCTGGGATTGTGCCTACCCTTCAGTGAGTATCCATTGACTTTGATTTTAATGCTTCGTTACAGCAGTGCCT GAATGTTGGATTGTAATTGCAAACTTGAGATGAATAACTATGCTGTCTGCTATTCGTTTTGGTTGCTTTAGATGAGTAAT ATGAAAGTTTGAGTTGTGGTTTGTGCATATGCATATGCTTATTCAAATCCAAGGGATCGATCATGAGTGATATTAAGATT ATAACTTGCATAGGATAGTATAACCTGGAATTACACTATAACTTGCACCCTGAAAATTTATATATTTGCTTCATCCAATT AACTTTGTTGATTTTGTTGAACATGTTGTTGATTTTGTTGAACATGTGCTAAATTTTTGCTCCCCTTATTTATATTTCTT ATCCTTCCCTGCTGTTGAGGTATATTGTTATCCACATTCAGCTAGTAGTTTATGGGAAGCTGATAGGATAATTACCGATA TTTGGGCAACGATTCTGGCTTGATCAATTTATCATTCATTTGTATTCCAATGGCAATGATTCCTTTTAGCCATCCTGCTT AAGATTTACCTGCCCTTTTATTGGTCTATTCTTAACCCAATCAAGAATTTCAGCCTTCAAAGCTTATTGAATGAGTTTTG ATGAGCTTTTGATGAGCATGCTCATAATGTATGGGGTTATAGTCCAAATGGAATTGCATGGGGTGTGTTCTTTTCTAGGT TGATGTCCCTGTATATTTCTGTTTCTTCCAAAGATAAACTCAAAATATATGGTTAGTATGCTTGTTATGGAAATTTTAAG GTAGTATCAGTTACTATGACTGGATAATTCGCTTATATATTTGCTTTGGAATCTAAAGATTATATTATTTGCACTGACAG AAATATTGTGTCAACTGTCAATTTGGACTGTAAGCTGGAGCTTAAATCGATTGCACTTCAAGCTCGTAATGCAGAATACA ATCCAAAGGCAAGCTTTACTTGTTAATAATGAATACGTTTGAATTCCACCTATATGGATGTTCTGGTGTATAACATGTCT TTTCCATAGCAAAACAATGAAGGTTGACTTATTTTTGCTTAGTTGTGGAGTTTTCTTTCTTTTAAAAAATCAGTGTTTCC GTCTGTCCCAGAGAAGCTTGTTTGCCTTATAAAAATTTCTCTCAGTTTTACTGCTGTTGTCATCCACTTATTCTCTCCAC TATGATGTGAAATTAACAACAGAATATATGCTTGGTACATCATTATGCTAGTTGGTCATTTTTCTGTTGTGCTGATGTCT ATAATCTGAATTTTTGCAGCGTTTTGCTGCTGTGATTATGAGGATCAGGGAACCAAAAACAACTGCACTTATTTTTGCGT CTGGCAAGATGGTATCTCCTTTTGTTGCCTCTGATACTTCTGTCCAGTTTAGTTGGAATCACATGAATTGGGATAGATTT GGCGCATTGCTTGTAATGGATTTCTATTTTGTACTCTTATGCTTTGTTAAATTTAATTGGCATGGTTAGGTCTGTACTGG AGCTAAGAGTGAGGAACAGTCTAGATTGGCAGCAAGAAAGGTATACCTAATGTTCTTTTCATTTTAAGCTCATTCACCCT GTATATTATTGAAGTTTCCCAGGTTGAGGTTCTTTAAACTGGAGAGCTTTGCCATTAATGTTAGCATGTTTTATCCACGT TTCTTGAAAATATATATTAATTTCTAATTTATTTGCTGCCTCTTCAGTATGCTAGAATTATCCAAAAGCTTGGCTTCCCA GCCAAATTTAAGGTACGACTACTGTGCGCATTCTTTTTATCTCCAGTTCTTCAACAAAGTTGTTTCATTCAATTAATCAA TTTGTTTTAGCCCTTCTTCAGATTTCTTACTACAAACATAGTGCTTGATCATTGATTTATTTCGTTTATATTTTGCTGTA GGATTTTAAGATTCAAAATATAGTTGGCTCTTGTGATGTCAAGTTCCCCATACGGCTTGAGGGTCTTGCATATTCCCATG GTGCTTTCTCAAGTGTAAGTATGAAATTTCATGGTGAATTTAATGGAAAACTGGACTTCATAACATCTTATCCTACTAAT TAGAACTGTTTTACTTTCTGGTCCTCTGGAACATGGTTTATTCTAAAGGATGTTGTCCATGAATTGATAAGTCATCTTTA AAAAAAAACTTATTGGGTTGTTTGAGCTTTATTAAAAATAAATTATTGGCGTCACATTGCATAATTCGCATGGTTGTTTT TGAATTACAGAAAAAAATATAGTACCACTGTTTTGAACCACAGAAGATAATAATTTGACTAACACCAATGCAAAACCAAT CCTGACTTCTGTGAAAGCGAAATATTCAAAATCCGGTTTTGTTTCAATTTTTATCATTTAGAAGTTGCTTTGACCTTAAG ATATCCATTTCAAACACACATTACAGATACTTATGTTTTAAAAGGTTAAGATTTTTGAAACTGAAACTGGAGAACATAGT GGAGGAGTATTTTCGGTCATGATGCTTGTGTGGTAAAATGATGGAAAGGGCCATTTTGTGTTGTGTCCGTGCATGTGCAG TTGGTTTCGTAGTTTCTTTTTTACACACTATATAAGTTAGGGGAACGAATATATGTTGAACATGGTTGTTCCTGGTGGTA TTAGTATGAACCAGAGCTGTTTCCAGGACTGATCTATCGAATGAAGCAACCGAAGATAGTCTTGCTTATATTTGTCTCTG GAAAAATTGTTCTGACAGGAGCCAAGGTATTATTCTTGAGATACTCCCACATGATTTTATGTTTTACCAGTTTCTTGGCT CATTGGATTAATGATGTTATGATTTCCATTTCTTTAGGTGAGGGATGAGACTTACACAGCCTTTGAAAACATATATCCTG TGCTTACTGAGTTCAGGAAAAACCAACAATGGTATGGACGTGGCTCTATTTCCACTACCTTTTGATTGATATAGATATAC ATGTCCTAATCACTGGATTAGGGTTGTCCTAATCATTTCTTCCGTGCTTTTTTCCATTATCTGACACTGACAGATTAAGT GCATATTTGGTTTAGCATTGGGAGAAGTTATTTTGGATAGAATTGATTCTGATAAATTTGATCATGGTAAAAGTGGGTTA CAAGTGATTCAATTTATGTTTGGATATGTTTACCATAAAAGTGATTTTTATACGAAAGTAACAGATATGTCAATGAAGCT GAAATTACTTTCATATTAACTCAAAAGCTTGATCTTTTTGCTTTGGCCTCAACATGATTTTATTTGCCTGAAGTGCTTTT AAGAACTTCAGCCAAACATGTTCTGATGATTAAGAAACACGGTAGAGAAGATTAAAAGTGCTTATATGGGCGAATAACGT GAAAACCAAACATATTCTTCAGATGTTGGCCTGGATTTACTAATTGAAAGATGAAATATTTCATGTTAGATTTTGTGTAG TTTCTTTCATTACATGTGTTGTGTCTGCAGAAATAAACTGAGTTTTGTTGTTTGCGAGCATTTTCTTCATGTATTCTGGA CCCAGGGTGACCGCTGTGGATGTGTCTGAAACATATCATGTGTTCTGATGTCTTGGAATATTTGCTATTAAATGGCAGAT TACTATCAAGAGCAGGAAGACCATTTTCAGGCCGAGAAGAACATAGATCATGGGCTCCGCTTGATTAAGCTGTGAATATA ATGACAGGAGTTCTTTGGGATGAGATAAACTAAGCCATTTTTGTTTGGTGTTTTTGAAAAAAAAAAAAAAAGGATATTCA TGTGTAAATTGAACAAATTGTGGATTCAGTTTGATGTTTTCAAAGAAAAGAAAGATTCACCCGGAGTTTCAATACATTTC CCGCTCTGACTACTGAATGTTTTGAATAATGAATTGAACTTTGAGCCTGTGTTGCATAGATCTGTAGAATCGCGTTGGCC CTATATCATCTTATTCAACGATGTATTGTGTTTGGATTAGTTGTAGGAAATCTATTTTGGATCTAAAATCAATTCCAAGA AGCTCCAAAATGTATGTTGAGTAAAAGTGATTTAATGTATCACTTGAAGTTCAAACTTATTCCACC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0454200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGAGCAAGGATTGGAAGGGAGCCAACCTGTGGATCTTCAGAAGCACCCTTCTGGGATTGTGCCTACCCTTCAAAA TATTGTGTCAACTGTCAATTTGGACTGTAAGCTGGAGCTTAAATCGATTGCACTTCAAGCTCGTAATGCAGAATACAATC CAAAGCGTTTTGCTGCTGTGATTATGAGGATCAGGGAACCAAAAACAACTGCACTTATTTTTGCGTCTGGCAAGATGGTC TGTACTGGAGCTAAGAGTGAGGAACAGTCTAGATTGGCAGCAAGAAAGTATGCTAGAATTATCCAAAAGCTTGGCTTCCC AGCCAAATTTAAGGATTTTAAGATTCAAAATATAGTTGGCTCTTGTGATGTCAAGTTCCCCATACGGCTTGAGGGTCTTG CATATTCCCATGGTGCTTTCTCAAGTTATGAACCAGAGCTGTTTCCAGGACTGATCTATCGAATGAAGCAACCGAAGATA GTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTGACAGGAGCCAAGGTGAGGGATGAGACTTACACAGCCTTTGAAAA CATATATCCTGTGCTTACTGAGTTCAGGAAAAACCAACAATGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0454200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAEQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMV CTGAKSEEQSRLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKI VLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10126:SF6
6 200 195 2.7E-151 –
PANTHER
PTHR10126
6 200 195 2.7E-151
IPR000814
Hamap
MF_00408
19 198 180 27.72
IPR000814
SUPERFAMILY
SSF55945
21 114 94 2.04E-33 –
CDD
cd04516
22 195 174 1.00514E-130
IPR033710
Pfam
PF00352
24 103 80 9.0E-33
IPR000814
PRINTS
PR00686
25 40 16 2.7E-68
IPR000814
Gene3D
G3DSA:3.30.310.10
30 111 82 3.9E-43
IPR012295
PRINTS
PR00686
49 68 20 2.7E-68
IPR000814
PRINTS
PR00686
68 86 19 2.7E-68
IPR000814
Gene3D
G3DSA:3.30.310.10
112 198 87 1.1E-42
IPR012295
SUPERFAMILY
SSF55945
112 198 87 5.5E-31 –
Pfam
PF00352
112 194 83 2.1E-32
IPR000814
PRINTS
PR00686
115 131 17 2.7E-68
IPR000814
PRINTS
PR00686
139 154 16 2.7E-68
IPR000814
ProSitePatterns
PS00351
143 192 50 -
IPR030491
PRINTS
PR00686
158 174 17 2.7E-68
IPR000814

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006352
Biological process DNA-templated transcription, initiation Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0454200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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