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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0454200 |
| Transcript ID | LotjaGi1g1v0454200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TATA-box-binding protein; TAIR: AT1G55520.1 TATA binding protein 2; Swiss-Prot: sp|Q42808|TBP_SOYBN TATA-box-binding protein; TrEMBL-Plants: tr|A0A151U2X0|A0A151U2X0_CAJCA TATA-box-binding protein; Found in the gene: LotjaGi1g1v0454200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:95525239..95528275) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTGAGCAAGGATTGGAAGGGAGCCAACCTGTGGATCTTCAGAAGCACCCTTCTGGGATTGTGCCTACCCTTCAGTG AGTATCCATTGACTTTGATTTTAATGCTTCGTTACAGCAGTGCCTGAATGTTGGATTGTAATTGCAAACTTGAGATGAAT AACTATGCTGTCTGCTATTCGTTTTGGTTGCTTTAGATGAGTAATATGAAAGTTTGAGTTGTGGTTTGTGCATATGCATA TGCTTATTCAAATCCAAGGGATCGATCATGAGTGATATTAAGATTATAACTTGCATAGGATAGTATAACCTGGAATTACA CTATAACTTGCACCCTGAAAATTTATATATTTGCTTCATCCAATTAACTTTGTTGATTTTGTTGAACATGTTGTTGATTT TGTTGAACATGTGCTAAATTTTTGCTCCCCTTATTTATATTTCTTATCCTTCCCTGCTGTTGAGGTATATTGTTATCCAC ATTCAGCTAGTAGTTTATGGGAAGCTGATAGGATAATTACCGATATTTGGGCAACGATTCTGGCTTGATCAATTTATCAT TCATTTGTATTCCAATGGCAATGATTCCTTTTAGCCATCCTGCTTAAGATTTACCTGCCCTTTTATTGGTCTATTCTTAA CCCAATCAAGAATTTCAGCCTTCAAAGCTTATTGAATGAGTTTTGATGAGCTTTTGATGAGCATGCTCATAATGTATGGG GTTATAGTCCAAATGGAATTGCATGGGGTGTGTTCTTTTCTAGGTTGATGTCCCTGTATATTTCTGTTTCTTCCAAAGAT AAACTCAAAATATATGGTTAGTATGCTTGTTATGGAAATTTTAAGGTAGTATCAGTTACTATGACTGGATAATTCGCTTA TATATTTGCTTTGGAATCTAAAGATTATATTATTTGCACTGACAGAAATATTGTGTCAACTGTCAATTTGGACTGTAAGC TGGAGCTTAAATCGATTGCACTTCAAGCTCGTAATGCAGAATACAATCCAAAGGCAAGCTTTACTTGTTAATAATGAATA CGTTTGAATTCCACCTATATGGATGTTCTGGTGTATAACATGTCTTTTCCATAGCAAAACAATGAAGGTTGACTTATTTT TGCTTAGTTGTGGAGTTTTCTTTCTTTTAAAAAATCAGTGTTTCCGTCTGTCCCAGAGAAGCTTGTTTGCCTTATAAAAA TTTCTCTCAGTTTTACTGCTGTTGTCATCCACTTATTCTCTCCACTATGATGTGAAATTAACAACAGAATATATGCTTGG TACATCATTATGCTAGTTGGTCATTTTTCTGTTGTGCTGATGTCTATAATCTGAATTTTTGCAGCGTTTTGCTGCTGTGA TTATGAGGATCAGGGAACCAAAAACAACTGCACTTATTTTTGCGTCTGGCAAGATGGTATCTCCTTTTGTTGCCTCTGAT ACTTCTGTCCAGTTTAGTTGGAATCACATGAATTGGGATAGATTTGGCGCATTGCTTGTAATGGATTTCTATTTTGTACT CTTATGCTTTGTTAAATTTAATTGGCATGGTTAGGTCTGTACTGGAGCTAAGAGTGAGGAACAGTCTAGATTGGCAGCAA GAAAGGTATACCTAATGTTCTTTTCATTTTAAGCTCATTCACCCTGTATATTATTGAAGTTTCCCAGGTTGAGGTTCTTT AAACTGGAGAGCTTTGCCATTAATGTTAGCATGTTTTATCCACGTTTCTTGAAAATATATATTAATTTCTAATTTATTTG CTGCCTCTTCAGTATGCTAGAATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAGGTACGACTACTGTGCGCATTCTT TTTATCTCCAGTTCTTCAACAAAGTTGTTTCATTCAATTAATCAATTTGTTTTAGCCCTTCTTCAGATTTCTTACTACAA ACATAGTGCTTGATCATTGATTTATTTCGTTTATATTTTGCTGTAGGATTTTAAGATTCAAAATATAGTTGGCTCTTGTG ATGTCAAGTTCCCCATACGGCTTGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTGTAAGTATGAAATTTCATGGT GAATTTAATGGAAAACTGGACTTCATAACATCTTATCCTACTAATTAGAACTGTTTTACTTTCTGGTCCTCTGGAACATG GTTTATTCTAAAGGATGTTGTCCATGAATTGATAAGTCATCTTTAAAAAAAAACTTATTGGGTTGTTTGAGCTTTATTAA AAATAAATTATTGGCGTCACATTGCATAATTCGCATGGTTGTTTTTGAATTACAGAAAAAAATATAGTACCACTGTTTTG AACCACAGAAGATAATAATTTGACTAACACCAATGCAAAACCAATCCTGACTTCTGTGAAAGCGAAATATTCAAAATCCG GTTTTGTTTCAATTTTTATCATTTAGAAGTTGCTTTGACCTTAAGATATCCATTTCAAACACACATTACAGATACTTATG TTTTAAAAGGTTAAGATTTTTGAAACTGAAACTGGAGAACATAGTGGAGGAGTATTTTCGGTCATGATGCTTGTGTGGTA AAATGATGGAAAGGGCCATTTTGTGTTGTGTCCGTGCATGTGCAGTTGGTTTCGTAGTTTCTTTTTTACACACTATATAA GTTAGGGGAACGAATATATGTTGAACATGGTTGTTCCTGGTGGTATTAGTATGAACCAGAGCTGTTTCCAGGACTGATCT ATCGAATGAAGCAACCGAAGATAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTGACAGGAGCCAAGGTATTATTC TTGAGATACTCCCACATGATTTTATGTTTTACCAGTTTCTTGGCTCATTGGATTAATGATGTTATGATTTCCATTTCTTT AGGTGAGGGATGAGACTTACACAGCCTTTGAAAACATATATCCTGTGCTTACTGAGTTCAGGAAAAACCAACAATGGTAT GGACGTGGCTCTATTTCCACTACCTTTTGATTGATATAGATATACATGTCCTAATCACTGGATTAGGGTTGTCCTAA
CDS sequence (LotjaGi1g1v0454200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAGCAAGGATTGGAAGGGAGCCAACCTGTGGATCTTCAGAAGCACCCTTCTGGGATTGTGCCTACCCTTCAAAA TATTGTGTCAACTGTCAATTTGGACTGTAAGCTGGAGCTTAAATCGATTGCACTTCAAGCTCGTAATGCAGAATACAATC CAAAGCGTTTTGCTGCTGTGATTATGAGGATCAGGGAACCAAAAACAACTGCACTTATTTTTGCGTCTGGCAAGATGGTC TGTACTGGAGCTAAGAGTGAGGAACAGTCTAGATTGGCAGCAAGAAAGTATGCTAGAATTATCCAAAAGCTTGGCTTCCC AGCCAAATTTAAGGATTTTAAGATTCAAAATATAGTTGGCTCTTGTGATGTCAAGTTCCCCATACGGCTTGAGGGTCTTG CATATTCCCATGGTGCTTTCTCAAGTTATGAACCAGAGCTGTTTCCAGGACTGATCTATCGAATGAAGCAACCGAAGATA GTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTGACAGGAGCCAAGGTGAGGGATGAGACTTACACAGCCTTTGAAAA CATATATCCTGTGCTTACTGAGTTCAGGAAAAACCAACAATGGTATGGACGTGGCTCTATTTCCACTACCTTTTGA
Protein sequence (LotjaGi1g1v0454200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMV CTGAKSEEQSRLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKI VLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQWYGRGSISTTF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 200 | 195 | 3.2E-151 | – | |
| PANTHER | 6 | 200 | 195 | 3.2E-151 | ||
| Hamap | 19 | 198 | 180 | 27.72 | ||
| SUPERFAMILY | 21 | 114 | 94 | 2.36E-33 | – | |
| CDD | 22 | 195 | 174 | 1.76433E-131 | ||
| Pfam | 24 | 103 | 80 | 1.0E-32 | ||
| PRINTS | 25 | 40 | 16 | 3.4E-68 | ||
| Gene3D | 30 | 111 | 82 | 4.4E-43 | ||
| PRINTS | 49 | 68 | 20 | 3.4E-68 | ||
| PRINTS | 68 | 86 | 19 | 3.4E-68 | ||
| Pfam | 112 | 194 | 83 | 2.4E-32 | ||
| SUPERFAMILY | 112 | 201 | 90 | 3.3E-31 | – | |
| Gene3D | 112 | 198 | 87 | 1.3E-42 | ||
| PRINTS | 115 | 131 | 17 | 3.4E-68 | ||
| PRINTS | 139 | 154 | 16 | 3.4E-68 | ||
| ProSitePatterns | 143 | 192 | 50 | - | ||
| PRINTS | 158 | 174 | 17 | 3.4E-68 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | DNA-templated transcription, initiation | Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription. |
Expression pattern of LotjaGi1g1v0454200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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