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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0457500 |
| Transcript ID | LotjaGi1g1v0457500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | plant/protein (Protein of unknown function, DUF599); TAIR: AT5G43180.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|Q9TM34|RPOC2_CYACA DNA-directed RNA polymerase subunit beta''; TrEMBL-Plants: tr|I3SKX7|I3SKX7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0457500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96082130..96083454) extracted from Lotus japonicus Gifu genome v1.2.
AGAACACGTTATAAGAAGCATCTCATTTTATTCAGAGTTACCAAACAAACCAACCCCTATAAGCTAGCCCAAAACCTCTT ACTAGCAATACTAGCTTCATAACCTGGAAATAAATATGGGAGTGGCTGTTTATTTGGATATCATTTTGGTCCCTTTGAGT CTTTTCATCACAATAGGTTACCATGTCTACCTCTGCCATGCCATTAAGAACAAACCTTCAAGAACAACTTATGGAATTGA TAGGCTTAGGAGGACAGCTTGGGGTGAGAACTTAAATCAGGTACCTTCATGTGTTCAATTTTTTTTTTTTAAATGCAACA TGTGTTCAATTGTTAATTGCATATGTTTATTCATTAATTGGGAATTGTTTGCAGCTCTCCCTGCAGGGTCTTGACCTTTG ATTTTTATTTTTAAAGAGGTCAAGATTGTTGCACGAATAATTATTTGATAAAAAAAGTGTAATAACTAATAATCAATGAT CTAGGATCCAAATCAGTTAAATTTTCATCCCTCTTACCAATTTTTTCTGGTTCTGCATCTACAGGGTGAAGACAAGAAGG CTATGCTAACTGTACAAAGCTTGAGGAACACACTCATGACCACCATACTCACAGCTACTATAACCATTCTTGTGAACTTG GCTTTGGCAGCTCTGACCAACAACACCTACAAAGCTAGCCATCTCTTCAATAGTGAATTTTTTGGCTCAAAATCAGACAA AGTCTTTGTTTTGAAGTATGGGTCAGCATCATTTTGCTTGTTGTTTAGCTTCTTATGCAGCTCCATGGCCATAGGATTTC TAATTGATTCCAATTATCTGATGAATGCTTATGGGGAGTTCTTGTCTGGGGGTTACACACAGAACATACTTGAAAGAGGG TTCACCTTAGCTCTTGTTGGAAATAGGATGCTCTGTGTTGCTGTTCCTTTGATGCTGTGGATGCTTGGTCCATTTGCAGT GTTTTTAGCCTCTTTGGCATTGGTTTGGGTGTTGCGCGAGTTTGATTTTGTCCCCCAATTCCCACACAGCAATAAAAACA ATGTATCAATGTGAAATAACCTGTTTTTAGCACTGATAAAGATTTTATGTTCTCATATAGTGTCTCATATGACCTATTAA TTAAATTGTCTTACGTCAATTAAAATTATTCACATAAAATATTAAATGTCATATTCAAACATTTTTTAATTGACATAACA AAATTTCATATGTTGCGACGAAAAATGAGATATTATTTGAAGAATCTCTGATTGATGCATAGCAGTATGCACTCGTTTAG AGGGGTGGCTCTTAACCTTTTAGCATGACCAATATAAAAAGTGTA
CDS sequence (LotjaGi1g1v0457500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGTGGCTGTTTATTTGGATATCATTTTGGTCCCTTTGAGTCTTTTCATCACAATAGGTTACCATGTCTACCTCTG CCATGCCATTAAGAACAAACCTTCAAGAACAACTTATGGAATTGATAGGCTTAGGAGGACAGCTTGGGGTGAGAACTTAA ATCAGGGTGAAGACAAGAAGGCTATGCTAACTGTACAAAGCTTGAGGAACACACTCATGACCACCATACTCACAGCTACT ATAACCATTCTTGTGAACTTGGCTTTGGCAGCTCTGACCAACAACACCTACAAAGCTAGCCATCTCTTCAATAGTGAATT TTTTGGCTCAAAATCAGACAAAGTCTTTGTTTTGAAGTATGGGTCAGCATCATTTTGCTTGTTGTTTAGCTTCTTATGCA GCTCCATGGCCATAGGATTTCTAATTGATTCCAATTATCTGATGAATGCTTATGGGGAGTTCTTGTCTGGGGGTTACACA CAGAACATACTTGAAAGAGGGTTCACCTTAGCTCTTGTTGGAAATAGGATGCTCTGTGTTGCTGTTCCTTTGATGCTGTG GATGCTTGGTCCATTTGCAGTGTTTTTAGCCTCTTTGGCATTGGTTTGGGTGTTGCGCGAGTTTGATTTTGTCCCCCAAT TCCCACACAGCAATAAAAACAATGTATCAATGTGA
Protein sequence (LotjaGi1g1v0457500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVAVYLDIILVPLSLFITIGYHVYLCHAIKNKPSRTTYGIDRLRRTAWGENLNQGEDKKAMLTVQSLRNTLMTTILTAT ITILVNLALAALTNNTYKASHLFNSEFFGSKSDKVFVLKYGSASFCLLFSFLCSSMAIGFLIDSNYLMNAYGEFLSGGYT QNILERGFTLALVGNRMLCVAVPLMLWMLGPFAVFLASLALVWVLREFDFVPQFPHSNKNNVSM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 219 | 219 | 5.9E-105 | – | |
| PANTHER | 1 | 219 | 219 | 5.9E-105 | – | |
| TMHMM | 4 | 26 | 23 | - | – | |
| Phobius | 6 | 26 | 21 | - | – | |
| Pfam | 10 | 211 | 202 | 1.3E-55 | ||
| Phobius | 27 | 71 | 45 | - | – | |
| TMHMM | 70 | 92 | 23 | - | – | |
| Phobius | 72 | 92 | 21 | - | – | |
| Phobius | 93 | 119 | 27 | - | – | |
| Phobius | 120 | 142 | 23 | - | – | |
| TMHMM | 120 | 142 | 23 | - | – | |
| Phobius | 143 | 183 | 41 | - | – | |
| TMHMM | 183 | 205 | 23 | - | – | |
| Phobius | 184 | 205 | 22 | - | – | |
| Phobius | 206 | 224 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0457500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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