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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0458300 |
| Transcript ID | LotjaGi1g1v0458300.1 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mannan endo-1,4-beta-mannosidase; TAIR: AT5G01930.1 Glycosyl hydrolase superfamily protein; Swiss-Prot: sp|Q9LZV3|MAN6_ARATH Mannan endo-1,4-beta-mannosidase 6; TrEMBL-Plants: tr|I1N3A5|I1N3A5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0458300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96169231..96172912) extracted from Lotus japonicus Gifu genome v1.2.
ATCACAGCTAGTTCCATATCTAACAAAGCCACTGTGCCCTTAAGACCAATTTGTGGAACCCAATTGAACGTACCTTATGA GCTAGGAAAGAAATTTTTGAAACTTTACTCCTACCCTTCACTTGTATACACCCATTTCTCAACAATGGAACACAGGATTT TCTTCGCTTTTAAGCTAGATTGGAATCATGATCTCTACTTGTACATTACTCCTCTCTATCTCTGAAACTCAAGATATATA ACATGATCCAAAAGAGCATGGACATTGTGGCTAGGTAACCAAGCTCAATGGAGAGATTTGGGATACCCATTATTTCTTTG ATCCTTCTTTTGATTCTTACTAAAAATTTAAGTTCCAATGCGTTTGGTGTCAGTATAGAGAATGAGGAAGTGCTCGATGA AGAGCAAAATTATATGGAAAAATCTATCTCAAATCAAGGGTATGATCTAAATTTGATATCCCTTCACCCTCTAGCTATCG TATTTTATATCTGCAATGTTATATGTTACGAATGAAAGTTGCAAGAAATGCTGATATGACACAACTCACACAAGTACACA ACTAACTTCATTATTTGACAGAAATCATTGGAGTAGTGAGAGATAATTACTACCATATCTTATGTTTCGTATAGTAAAAT TTAGTATATCCCATCATCTTATGTTGGTCAATCCATGTGCTTGTTTCTTTAACCATGATAGTTGAACTTTTTTACTTTTT GCTTTCTTACTAAAGGAGTGAAATGAGGGATATGGAAGAAGATGAATGGCAGATGGTGCAGAAGAAAGGAAGCCAATTTG TGGTAAATGACCAACCTTTCTACATCAATGGATTCAACACCTACTGGCTGATGGTGTTTGCTGCAGATGAGTCAACCAGA GGAAAGGTCACTGAAGTGTTCAAACAAGCATCCTCAGTGGGCATGACAGTTTGCAGGACTTGGGCCTTCAATGATGGCCA GTGGCGCGCCCTGCAGAAATCCCCATCAGTTTATGATGAAGAAGTCTTCAAGGTGCTCCTTAATTCTTTTGGTATTTTAT GTACTCCCACACTTGCTTAGTCTAATGAACTTTTTGCTACTTCTGATTGAAGCATTACGGAGAGGGTTAGACACCAATCT CATGAATTGTTTGCTTGTGTAAGCTTACATGGTGATTAGAATTAGATTATGATACAATCAAATGGTGCTTGTTTGGAAAT CATTCTATCATTGGTTCTGAAACCAGAATCAACTCTGAGGAGAAGCTTACGTGAGTAGCTTCTGAGTTTCATATTGATTC TGAGGTAACAGAAGCTGATCTAAACATGCTGAGCTATTATCAGTGTAGCTAATTATCATTCCTCTCCGCAGGCCCTGGAT TTTGTGGTGAGTGAAGCAAAGAAGTACAAAATCAGGTTAATATTGTCATTGGTTAACAACTGGGAAGCATATGGTGGCAA AGCACAATATGTGAAATGGGGCAAAGATGCTGGTCTAGACTTGACTTCTGATGATGACTTCTTCTCACATCCAACTCTTA GAAACTACTACAAGGCCCATGTTAAGGCAAGTTTATTTTCTTAGAGTTTCAGTTGGTTTGTTAACATGTTGTTTAGTTAG TTAGTTTGGTTATGTTAATTTGAGTTGGTTATGATGATATTGGTGTGTCTGATTGTAGTATAAATTGGTACTTGCATCTT CTTTTCATAAATATGGAACCTCCTTGGTTTCCTCTCTCACTTGAAATTCTCTCTTCCTCCCTCTCTCTCTTTCTCAATCT CCCCATTTTACTCAAACATTTAAATATAACAAGAGGACCAAACCACCATGGGTTATTTTGATTTGGACACTGGAGTTAAG CTTGTTTTTATGTGCTGCAATGACTACATGTCTAGAAATTGCTTCCTGCTCATGATCCTGCTGTTTTCCTTCTTATTTCA TTTCCATTACTCAGTAATCAATTACTTCCAATACTATATTTTCTCTGTAGACTGTGCTCAATAGAGTTAATACATACACA AATATCACTTATAAGGAAGACCCTACAATTTTTGCTTGGGAGTTGATGAATGAGCCTCGATGCTCCTCAGATTCCACAGG TGATAAGTTACAGGTTTGCCCCTTAGAATCTTCTTCTGGCTTCCAAAACAGAAGTGAAGGGTATACCCTGCATTTTCTAG TAGCATATAACCAATTCACAACACACTAACAATTAGAATTCCACTTGAATATATATTTCTTAGGATTGGATACAAGAAAT GGCATTCCATGTTAAGAAAATTGATCCAAAACACATGGTGGAGGTTGGATTGGAAGGATTTTATGGCCCTTCAACACCTC AGAGAGTTCAGTTCAATCCAAATACTTATGCTCAACAGGTTGGAACTGATTTCATCAGGAACCACCAGGTTCTTGGTGTG GACTTTGCTTCTGTTCACATATACGCTGACTCTTGGTAAGCTGTGTTTAGTAATGATATTGTTTTGCTCATATATGTGAA GTTATCATAAAAATGTCTTCTTCTCTCCATCCATTTATGCAAACTGTTACATTCATACCAATATCATATTCATATGCATT TGCATACTTATCTAGTCTGTTATAAACACTACTATTTGTCTTAAATCTTAATAATGTATTTGTTCATCCAATTTCCTAAC ATTTCTAGTAGAAGAATAATATAAAATTATTTATGTGTATTCATTCGATAGTTAGTTAGTTCATGACATGATATTAGAGT CTCTATAACCAAGTCTAAATTTCGATCCTCGTTGCCCCTGTTATTCTAGTATAAAATTGAATTTCAGCACACAATATATG AACCTGAGTATTGTGCACACTTCAAGTTCAATGTGAACATGTGTATGTTAGAAGTATAATATAAAATCATTCATTTTGTT TACCCAACAATTTAAGCTTTTGGGCTAATTGGTTCATGACAGTTTCTAACTGAATTTCCTGGTTGAAGGATTTCACCACA AATTGCTGATACTCATCTCCCATTTATAAAATCTTGGATGGAAGCCCACATTGAGGATGCTGAAAACTATCTTGGAATGC CTGTTGTTTTTTCTGAGTTCGGTGTGTCTTCCAAGGATTCTGGCTACAATTCAACATACAGAGACACAGTAATCAGCACT GTGTACAGCACCATCCTGAACTCTACAAAGAAAGGAGGGAGTGGAGCTGGAAGCCTTTTGTGGCAGGTTTTCCCTGATGG AACAGATAACATGGATGATGGGTATGCAGTTGTTTTCTCAAAATCTCCTTCCACCTCAAGTATTGTGTCCCTTCAATCCA CTAGGCTTGCTCTATTCAACTCCTTTTGCTCTTCAAAATGCAAATGGAGATGTAAGAAGAAAAAAATAGTGGAGAAAATA ATGTATCATGATGAACTCTAAAAGCTTCTAATTGTAAAGCAATGGCCATTTGAAACCATGCATGAATAAGTGTGTGATTC ATATTGATGTCAGTAGTGTGTTTAATTTCTAGGGCCATGCAAGTTTACTGTCTTCACTGTAAAATTATATGCATACATTT GATCATCAATTCATCATGTTGATAAAATAAGGTAGCAGTGTACTCAATAAAAAGTAGCATTTTGTACAAAAAAAAAAAAA AAAAAAAACTAGTCAAATGGAAGTTCCAAATGCAATTGAATACATATCTCATCTTAAAAAGTAATTTCATTGAATATGTA AA
CDS sequence (LotjaGi1g1v0458300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAGATTTGGGATACCCATTATTTCTTTGATCCTTCTTTTGATTCTTACTAAAAATTTAAGTTCCAATGCGTTTGG TGTCAGTATAGAGAATGAGGAAGTGCTCGATGAAGAGCAAAATTATATGGAAAAATCTATCTCAAATCAAGGGAGTGAAA TGAGGGATATGGAAGAAGATGAATGGCAGATGGTGCAGAAGAAAGGAAGCCAATTTGTGGTAAATGACCAACCTTTCTAC ATCAATGGATTCAACACCTACTGGCTGATGGTGTTTGCTGCAGATGAGTCAACCAGAGGAAAGGTCACTGAAGTGTTCAA ACAAGCATCCTCAGTGGGCATGACAGTTTGCAGGACTTGGGCCTTCAATGATGGCCAGTGGCGCGCCCTGCAGAAATCCC CATCAGTTTATGATGAAGAAGTCTTCAAGGCCCTGGATTTTGTGGTGAGTGAAGCAAAGAAGTACAAAATCAGGTTAATA TTGTCATTGGTTAACAACTGGGAAGCATATGGTGGCAAAGCACAATATGTGAAATGGGGCAAAGATGCTGGTCTAGACTT GACTTCTGATGATGACTTCTTCTCACATCCAACTCTTAGAAACTACTACAAGGCCCATGTTAAGACTGTGCTCAATAGAG TTAATACATACACAAATATCACTTATAAGGAAGACCCTACAATTTTTGCTTGGGAGTTGATGAATGAGCCTCGATGCTCC TCAGATTCCACAGGTGATAAGTTACAGGATTGGATACAAGAAATGGCATTCCATGTTAAGAAAATTGATCCAAAACACAT GGTGGAGGTTGGATTGGAAGGATTTTATGGCCCTTCAACACCTCAGAGAGTTCAGTTCAATCCAAATACTTATGCTCAAC AGGTTGGAACTGATTTCATCAGGAACCACCAGGTTCTTGGTGTGGACTTTGCTTCTGTTCACATATACGCTGACTCTTGG ATTTCACCACAAATTGCTGATACTCATCTCCCATTTATAAAATCTTGGATGGAAGCCCACATTGAGGATGCTGAAAACTA TCTTGGAATGCCTGTTGTTTTTTCTGAGTTCGGTGTGTCTTCCAAGGATTCTGGCTACAATTCAACATACAGAGACACAG TAATCAGCACTGTGTACAGCACCATCCTGAACTCTACAAAGAAAGGAGGGAGTGGAGCTGGAAGCCTTTTGTGGCAGGTT TTCCCTGATGGAACAGATAACATGGATGATGGGTATGCAGTTGTTTTCTCAAAATCTCCTTCCACCTCAAGTATTGTGTC CCTTCAATCCACTAGGCTTGCTCTATTCAACTCCTTTTGCTCTTCAAAATGCAAATGGAGATGTAAGAAGAAAAAAATAG TGGAGAAAATAATGTATCATGATGAACTCTAA
Protein sequence (LotjaGi1g1v0458300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MERFGIPIISLILLLILTKNLSSNAFGVSIENEEVLDEEQNYMEKSISNQGSEMRDMEEDEWQMVQKKGSQFVVNDQPFY INGFNTYWLMVFAADESTRGKVTEVFKQASSVGMTVCRTWAFNDGQWRALQKSPSVYDEEVFKALDFVVSEAKKYKIRLI LSLVNNWEAYGGKAQYVKWGKDAGLDLTSDDDFFSHPTLRNYYKAHVKTVLNRVNTYTNITYKEDPTIFAWELMNEPRCS SDSTGDKLQDWIQEMAFHVKKIDPKHMVEVGLEGFYGPSTPQRVQFNPNTYAQQVGTDFIRNHQVLGVDFASVHIYADSW ISPQIADTHLPFIKSWMEAHIEDAENYLGMPVVFSEFGVSSKDSGYNSTYRDTVISTVYSTILNSTKKGGSGAGSLLWQV FPDGTDNMDDGYAVVFSKSPSTSSIVSLQSTRLALFNSFCSSKCKWRCKKKKIVEKIMYHDEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| Phobius | 8 | 18 | 11 | - | – | |
| PANTHER | 15 | 463 | 449 | 2.9E-288 | – | |
| PANTHER | 15 | 463 | 449 | 2.9E-288 | – | |
| Phobius | 19 | 27 | 9 | - | – | |
| Phobius | 28 | 463 | 436 | - | – | |
| Gene3D | 61 | 436 | 376 | 9.2E-135 | – | |
| SUPERFAMILY | 65 | 420 | 356 | 1.46E-79 | ||
| Pfam | 75 | 378 | 304 | 6.8E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0458300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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