Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0460500 |
| Transcript ID | LotjaGi1g1v0460500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin efflux carrier family protein; TAIR: AT5G01990.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9LZN2|PILS6_ARATH Protein PIN-LIKES 6; TrEMBL-Plants: tr|I3T5T5|I3T5T5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0460500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96445287..96451258) extracted from Lotus japonicus Gifu genome v1.2.
CGTCGGCATTCCGGCGTGTCTCTAACTACCAGTCCTTTTCATGTGAACGACAGGTGGTGTATATAATTAGAGTCACATTA AGATTTAGATTCATAGATTTAGATTTAGCCAACTTTGTTTTTTTTAATGATGTTTCTGTTTTCTTAATTCAGTGGAAGAC AAAAGAAAATTCAATTATTCATATTCACAGGTTGATGCTGAAGTTGATACTGCTACCTTTACAAAACTGACCATATAGTA TATAATAAACCCTTTATTATTATTTTGAGGACACTTTTTTCTCTCTGAATCAAAGGAAAAACCAGGATCTTCTACAGTTC TTTGTAAGTTCTTAATTTTGGATTTTTGTTTGTGATTTTCCTGTTCTATCTGATTTTTCAACCATGTTTTGATGGTGGAA ATTTTTTGGTGCAGTTTCAGAAGTAACTGAAGAGGGTCCTGATTGGAATAAAAAAGGAGATTCCTTTTTTCTTGGGGAAG AATAAAAGTTTTTGGATTGGATTGGTTTGCTTAGAAACGACGCGTGAGAATGGCAGAAACGATGGGGAGGTTTCTGTTGG CTTTGCAAAATCAGGGGGGTTCAGGAGGAGAATCTTTGTTGGGGAGTATCAAAATTGCAGTTTTGCCTATAGTTAAAGTG TTCACCATGTGTTTCTTGGGGTTTCTTATGGCTTCAAAGTATGTTAACATTTTGCCTGCTTCTGGAAGGAAGCTCTTGAA TGGGGTATGAATTGTTGGCATGTGTTTTCAATTTGGAATTGCTCTTCCTCTTTCTCAATTCTCACTCATTCACTCATTGC CCCATTTTTTGGATTTTGCAGCTGGTGTTTACACTCTTGTTACCCTGCTTGATATTCTCCCAGCTGGGACAAGCTGTTAC CTTGCAGAAGATGCTTGACTGGTAGGTAACTGGTAGAATAATATTATATAAAATCATTCATGTGTATTCACTGAATAGCT TAAGCTTTTGAGATAATTTATTTGCGACATGGTATCAGAGTCTATCCTATATCCGTTATTTGGAGACCACCTATATATGA GTGTTAATTCCTGCAAATTTGGTGCTCCAGATATCGATCCTGGTAGAGGTGGGTTGGGAAGTCTTACATTGACTAGATAT GAACAAATAAGTGTTTATAAAGGGTAGAACAATCATCAAACCCTAAGCTAGCTTTTGAGGTAGAGTTAGGTCTAACCCGC CAAACCCGAATTCTAAGTGTAACCAGTGTTCTCAGTTCCCCAACTTTTCATTTCCCTTTTATTATAAGATTAACACCACA CAGACATTCCAATTCGTAAATAATTCAATTTTTTTTTTGCAGGTGGTTCATTCCTGTTAATGTTGTTCTTGGTTCCGTAT CAGCCTCAATCATTGGTTTTCTTGTTGCCTCCATCGTCCGTCCCCCATACCCTTTCTTCAAGTTTACGATTGTGCATATT GGAATCGGTAACCCAATCAACCTGTTTCTCTTTCTTTACATTTTGAAATATTGTTTGGTACCTTCCGTACATGTTTGGAT AGTGGAAAACCATGGTGAAACCAAAATCACGGTGGACATCCAAACATGCAGGAAGTGTTTTCCATCTCAAGATAAAGAAT TGTTTTGTATATGATTAATATGATATCAAATGGAAAAAGTTTGAAAAAAATAATAATATGTATGTGTCTGTGTTTCATCA TGTGATGGTTTTCCTTGCTTTGAATCTTAACATTGCAAATTTCTATACAGGGAATATTGGGAATGTGCCGCTTGTCCTGA TTGCTGCTTTATGTCGAGACCAAAACAATCCCTTTGGAGACTCAAATAAATGTAGTACAGATGGAACTGCCTATATATCA TATGGCCAGTGGGTAGGTTCTAGATATCTTATTGTTATTGACAACTACTGTCTTAGTTGTTGATATCATGTGCCTTCAAT CATAATTTATTCACTTGTTGAGCAATTTTCAGTATCGTTTCAGGGTCTTTATTTTAAGTTAGATTACTTAATATATTTAT GATGTCATAGAAATCATACTCTCACGGAAAGAAAAACCTAGAACTAATAAGCAGTTATTAATTCTCATTTGTCTTAGGTC GGTGCTATCATCCTATACACCTATGTATATAATATGTTGGCGCCTCCTCCAGAAGGCACCTTTGACATTGATCCTCAAAG TATTCCCATAAAGTGTACTACAAAGAGTGATGGTTCACCTGAACAAGATCCATTACTTACTCAGGAGGAGGGGGGCTATT TAACAGGTCCGAATGCTTCAAGGAAGTGGAAGGTGAGATTAACTTGATACACATATATTGATTGTTTTCCTTTTTTTTCG ACATAATTTGATGAACCAGAGGATGAAAAATCTACTATTGGTTTCTCTTTTTTATGGTGGTGGTGGGGGGAGTATAGTTT CAGTATTTCAAGTGGATGTCAGTATATGATTTTCTCAAGTATATTTCCCCATAATCTAAATCAACATTTCACCCTTCTTT TTGTACGTGTTGAGTAAATGATGCTTGACTACTTACTGTGCCTTCCAAGTTTGACCATCTTTCATAATTATGTTCTTGAA TTTTTGGACGTCTTTTGATATCAAATTTCTTGTTTATGTCCTTCATGACCAACTTCCAAAATCTCTTTATTTGGCCTCTG CAATTTTGCTGATGGTTTCAGTTTTATATCTATTCCCTCAAATTTCTAGTGATTACATGTTTTCCTTATCACATTTGAAT TTTACTCTTCCCTGGGTACAATGTTTACACGTTTGTTCGTGCAGATGAAAGATTGCTTAAGATTCCTATATGAGAAGTTG AAGCTTAAGCAAATTCTTCAACCCCCTATTATTGCATCAGTAAGTTTCTCCTTATTGAATCCATAGTGAGTATTTAGTTT TTCACTTGTTCTCATTTTATATACTGAATTATTCTCAGTCCCTCTCCATTTTATGATGGTGCACGTGTTTTGAGGTTATA TCCTATTTGTCCTGATAGGGTTATCCAACTTATTTATCATGTTTTCTGTATTATGTAGTAGAGCAAATAAAGAAATAAAT GTATCACAGGTTTGCGTGAGAGGGCGTATTAGATATATAGGCTAACATTTGGCGTGAAGAGGTTAATTAAGTGCTTCTGG CAATAAGCACTTATTCATAAGCTAATTTGAGAAGTTCATCGAAACAATTTTCAAATAGCTTATAGGTGAGTATAAGCGCT TATTCATAAGCCAAATATCAGTTTATAGGTAGGTCATAAGCTATTTTCATAAACTCACTTAAACACTTGTATAAACACTT ACACTATTAGATAAGCTCAAATAATCTCTTTCAAACGAGGACATAATGTAAAATCATTCATGTGTCTTCACCTAATAGCA TGAGCTTTTGATATAGTAATTCTTGACACATAGCATAGATGAGAAATGCTCTAAACTTTTCCCCCCTCTTACGCTTACCT TTTATTTTTCTCATTTTACTTCTTTGTATAAGCTATATTTATGCCTAGTCTTGTAGATAATTAGAAAAAACTAGGAAATG CTTGTAGAGATTTATCTAATTTCGGAATAGTCAAATACCCACAGCAATCACCTTATAAATTTGTACAAGTCGAAGTAATG TTTGTAAACTAGTATACAGGTATTTTTGTAAATAGATCACTGTCATGTTAATGTATTTTGGTAAACTAGTTCATTTATTG AGGTATTGGACATTTTTTGCAGATTCTAGCCATGGTTCTTGGTGCAGTCCCATTTTTGAAGAGTCTGATCTTTACTCCTG ATGCTCCACTATTCTTCTTCACTGACAGTTGCATGATTCTTGGGTATGCCCATCTAACTTTTAATGAAGTCGATGCTTTT TCGCTCATATAGGTTTTAGTTTGTTTTCTGTTATCAAGTATTCTCTAGTCTATAGAACAACATACACAATTTTTTCCTTG AAACAATTTTTTTGTGGGATAATAACATTTGGCATTTTCTGACAAGTTAATAAACTCTCGATTAAAAGCTTTATATAGTT TTGGCAGATGGCAGTTGAGCCATTTTCTTTCAGAATTAGGAGCAACAATGTCCTTCATGTAGTGACTCATAGCTTCATCT AACTATCCTTCAAGTTGAGCCATCCTTTCTGAATCAGAAATAACAGACATTATTTAGACCTGTAGTGACTCATAGCTTCA TCTAACTATCCTTCCAGTAACTTGTAATATCAAATTTTGGTGTACAGCTACCTAAATATTGTCACAATGAGCCTTTCCAA GTCAATGTTTTCTTTCTGCTCATCAATTGGTTTCGAAAAGGACACCTTATCCTTCGCTCTCTTACTTTTCCTGTTTTTTC TCAACTTTTATTTTTCGATAAACAATGAGAGGAGTGCTATAACACTCATTGATTGGTTGAAATTTATGTGTGTCCCACTA AATTGGATGTGGAGCCCATATTTTTAGTGGATCTACATAAATTACAACCAATCAATGAGAGAGTAATGCAAAAAGAGTGA TAAAGTGAGCGTTGCAGATATTTTTCAAACAAATAAATTCAGCAAAACATTTGAATCTTCGCTATCCCGCAATCCATAAT AGTATAATACAGAAGAACTTCAAAATGTGTTATGGAACTATGTCAGTTTTAGTTCTGCACTAGAAAATTACATTATTATT TATCAGCCAGAAGTTATTTAGTGATACTTATACAGCTATTATAGGTGATAATGTCTAATAGTTCTTTTGGTGATCAGGGA GGCCATGATTCCTTGCATTCTGTTGGCATTGGGAGGCAACCTTATTGATGGTAAAAATTTATGTCATAGTCTCATTAAAT CTAATCAATGTCACTTAATATTGTGACTTAAACATCTAAATGGATCATGGTTGGAATTTTATCTTTGTTGCAGGACCTGG AAGTTCCAAACTTGGCCTTCGAACAACTGCTGCTATTGTTTTTGCGCGGTTAGTTTTAGTGCCTCCAGTTGGACTTGGCA TCGTAATGTTGGCTGACAAGCTTGGCTTTCTGCCCCCGGATGATAAGATGTTCCGATTTGTCCTTCTCCTTCAGCATTCA ATGCCAACATCTGTCCTTTCAGGTATAGCACACTCTTCTGTCCTAGTTCTACTTCTTTCTGGTAGAGACATTTCCAACAT TTTCTAGGGGTTAAAAGTTCAAACTCTGTTATAAATGGATGGAAAGTTGGGAAATAGTTGCTGCTTTGTCCTCAGTCTCA AGTTGTTCCAAGTAATTTTCTTATTAGTGAACAAGTTTGTTAAATCTTATTATATAATAGTTGATAAAATAAGGGCAAAC CTTGTGCTATAAAGCTCCCGCTATGCGCGAGTTCCAGGGAGGGGCTGGGCCCCGTTTTGTGGATATAATGTAGAGACTAG AGAGTCTTACCTTGCCTTTTTGCAAGATGTTGATTCAACTGCTGGAACCTGTGACTGCAAAGTCACATGGCAGCAGCGTT ACCATTGCACTGAGGCTCACCCTTATATGGAAATGAGTTTTTTCTGGTGTTGGTTTTGATGCATAAATCTTTTACTTGTT GACAGGTGCTGTTGCTAATTTAAGAGGGTGTGGAAAGGAAGCAGCTGGTGTTCTATTCTGGGTTCATATCTTTGCTATAA TCTCCATGGCTGGATGGATTGTTCTATTTCTTAACATACTCTTCTGAGACTTCAGAGAGCTGTAATGATTTAGCAATAAT CTTGTAATTTAATCCAATTAATTTTGTACATTTGATGTTAGATCAGTGGAGAAACACGGGTACTTTATATATTGTGCCGT TACTGATTAATGATGTTCATTAGGGGAAAACAACTTCCCTCTTCAAAGTTCAATTGTCTAGTTTAAACTTTAGGTCTAGT TACTATTTGAAACCTGGTTTGGAGAAACAATTCTCTAGCAATATACTGTAATAACATCTTTTTCAATTCATTTCAAGGTT ATGCAAAAGGAACCATCAATGATTATATTCACATGCAAGGCTTGAATATGTC
CDS sequence (LotjaGi1g1v0460500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAAACGATGGGGAGGTTTCTGTTGGCTTTGCAAAATCAGGGGGGTTCAGGAGGAGAATCTTTGTTGGGGAGTAT CAAAATTGCAGTTTTGCCTATAGTTAAAGTGTTCACCATGTGTTTCTTGGGGTTTCTTATGGCTTCAAAGTATGTTAACA TTTTGCCTGCTTCTGGAAGGAAGCTCTTGAATGGGCTGGTGTTTACACTCTTGTTACCCTGCTTGATATTCTCCCAGCTG GGACAAGCTGTTACCTTGCAGAAGATGCTTGACTGGTGGTTCATTCCTGTTAATGTTGTTCTTGGTTCCGTATCAGCCTC AATCATTGGTTTTCTTGTTGCCTCCATCGTCCGTCCCCCATACCCTTTCTTCAAGTTTACGATTGTGCATATTGGAATCG GGAATATTGGGAATGTGCCGCTTGTCCTGATTGCTGCTTTATGTCGAGACCAAAACAATCCCTTTGGAGACTCAAATAAA TGTAGTACAGATGGAACTGCCTATATATCATATGGCCAGTGGGTCGGTGCTATCATCCTATACACCTATGTATATAATAT GTTGGCGCCTCCTCCAGAAGGCACCTTTGACATTGATCCTCAAAGTATTCCCATAAAGTGTACTACAAAGAGTGATGGTT CACCTGAACAAGATCCATTACTTACTCAGGAGGAGGGGGGCTATTTAACAGGTCCGAATGCTTCAAGGAAGTGGAAGATG AAAGATTGCTTAAGATTCCTATATGAGAAGTTGAAGCTTAAGCAAATTCTTCAACCCCCTATTATTGCATCAATTCTAGC CATGGTTCTTGGTGCAGTCCCATTTTTGAAGAGTCTGATCTTTACTCCTGATGCTCCACTATTCTTCTTCACTGACAGTT GCATGATTCTTGGGGAGGCCATGATTCCTTGCATTCTGTTGGCATTGGGAGGCAACCTTATTGATGGACCTGGAAGTTCC AAACTTGGCCTTCGAACAACTGCTGCTATTGTTTTTGCGCGGTTAGTTTTAGTGCCTCCAGTTGGACTTGGCATCGTAAT GTTGGCTGACAAGCTTGGCTTTCTGCCCCCGGATGATAAGATGTTCCGATTTGTCCTTCTCCTTCAGCATTCAATGCCAA CATCTGTCCTTTCAGGTGCTGTTGCTAATTTAAGAGGGTGTGGAAAGGAAGCAGCTGGTGTTCTATTCTGGGTTCATATC TTTGCTATAATCTCCATGGCTGGATGGATTGTTCTATTTCTTAACATACTCTTCTGA
Protein sequence (LotjaGi1g1v0460500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAETMGRFLLALQNQGGSGGESLLGSIKIAVLPIVKVFTMCFLGFLMASKYVNILPASGRKLLNGLVFTLLLPCLIFSQL GQAVTLQKMLDWWFIPVNVVLGSVSASIIGFLVASIVRPPYPFFKFTIVHIGIGNIGNVPLVLIAALCRDQNNPFGDSNK CSTDGTAYISYGQWVGAIILYTYVYNMLAPPPEGTFDIDPQSIPIKCTTKSDGSPEQDPLLTQEEGGYLTGPNASRKWKM KDCLRFLYEKLKLKQILQPPIIASILAMVLGAVPFLKSLIFTPDAPLFFFTDSCMILGEAMIPCILLALGGNLIDGPGSS KLGLRTTAAIVFARLVLVPPVGLGIVMLADKLGFLPPDDKMFRFVLLLQHSMPTSVLSGAVANLRGCGKEAAGVLFWVHI FAIISMAGWIVLFLNILF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | - | – | |
| PANTHER | 16 | 418 | 403 | 6.1E-182 | ||
| PANTHER | 16 | 418 | 403 | 6.1E-182 | – | |
| TMHMM | 27 | 49 | 23 | - | – | |
| Phobius | 29 | 49 | 21 | - | – | |
| Pfam | 31 | 410 | 380 | 6.4E-77 | ||
| Phobius | 50 | 60 | 11 | - | – | |
| Phobius | 61 | 80 | 20 | - | – | |
| TMHMM | 62 | 84 | 23 | - | – | |
| Phobius | 81 | 91 | 11 | - | – | |
| Phobius | 92 | 114 | 23 | - | – | |
| TMHMM | 94 | 116 | 23 | - | – | |
| Phobius | 115 | 125 | 11 | - | – | |
| Phobius | 126 | 147 | 22 | - | – | |
| TMHMM | 128 | 147 | 20 | - | – | |
| Phobius | 148 | 166 | 19 | - | – | |
| TMHMM | 167 | 189 | 23 | - | – | |
| Phobius | 167 | 185 | 19 | - | – | |
| Phobius | 186 | 260 | 75 | - | – | |
| TMHMM | 260 | 282 | 23 | - | – | |
| Phobius | 261 | 281 | 21 | - | – | |
| Phobius | 282 | 286 | 5 | - | – | |
| Phobius | 287 | 310 | 24 | - | – | |
| TMHMM | 287 | 309 | 23 | - | – | |
| Phobius | 311 | 321 | 11 | - | – | |
| Phobius | 322 | 349 | 28 | - | – | |
| TMHMM | 330 | 349 | 20 | - | – | |
| Phobius | 350 | 360 | 11 | - | – | |
| Phobius | 361 | 382 | 22 | - | – | |
| Phobius | 383 | 393 | 11 | - | – | |
| Phobius | 394 | 417 | 24 | - | – | |
| TMHMM | 395 | 417 | 23 | - | – | |
| Phobius | 418 | 418 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0460500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…