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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0460500 |
Transcript ID | LotjaGi1g1v0460500.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Auxin efflux carrier family protein; TAIR: AT5G01990.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9LZN2|PILS6_ARATH Protein PIN-LIKES 6; TrEMBL-Plants: tr|I3T5T5|I3T5T5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0460500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96445612..96450729) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAGAAACGATGGGGAGGTTTCTGTTGGCTTTGCAAAATCAGGGGGGTTCAGGAGGAGAATCTTTGTTGGGGAGTAT CAAAATTGCAGTTTTGCCTATAGTTAAAGTGTTCACCATGTGTTTCTTGGGGTTTCTTATGGCTTCAAAGTATGTTAACA TTTTGCCTGCTTCTGGAAGGAAGCTCTTGAATGGGGTATGAATTGTTGGCATGTGTTTTCAATTTGGAATTGCTCTTCCT CTTTCTCAATTCTCACTCATTCACTCATTGCCCCATTTTTTGGATTTTGCAGCTGGTGTTTACACTCTTGTTACCCTGCT TGATATTCTCCCAGCTGGGACAAGCTGTTACCTTGCAGAAGATGCTTGACTGGTAGGTAACTGGTAGAATAATATTATAT AAAATCATTCATGTGTATTCACTGAATAGCTTAAGCTTTTGAGATAATTTATTTGCGACATGGTATCAGAGTCTATCCTA TATCCGTTATTTGGAGACCACCTATATATGAGTGTTAATTCCTGCAAATTTGGTGCTCCAGATATCGATCCTGGTAGAGG TGGGTTGGGAAGTCTTACATTGACTAGATATGAACAAATAAGTGTTTATAAAGGGTAGAACAATCATCAAACCCTAAGCT AGCTTTTGAGGTAGAGTTAGGTCTAACCCGCCAAACCCGAATTCTAAGTGTAACCAGTGTTCTCAGTTCCCCAACTTTTC ATTTCCCTTTTATTATAAGATTAACACCACACAGACATTCCAATTCGTAAATAATTCAATTTTTTTTTTGCAGGTGGTTC ATTCCTGTTAATGTTGTTCTTGGTTCCGTATCAGCCTCAATCATTGGTTTTCTTGTTGCCTCCATCGTCCGTCCCCCATA CCCTTTCTTCAAGTTTACGATTGTGCATATTGGAATCGGTAACCCAATCAACCTGTTTCTCTTTCTTTACATTTTGAAAT ATTGTTTGGTACCTTCCGTACATGTTTGGATAGTGGAAAACCATGGTGAAACCAAAATCACGGTGGACATCCAAACATGC AGGAAGTGTTTTCCATCTCAAGATAAAGAATTGTTTTGTATATGATTAATATGATATCAAATGGAAAAAGTTTGAAAAAA ATAATAATATGTATGTGTCTGTGTTTCATCATGTGATGGTTTTCCTTGCTTTGAATCTTAACATTGCAAATTTCTATACA GGGAATATTGGGAATGTGCCGCTTGTCCTGATTGCTGCTTTATGTCGAGACCAAAACAATCCCTTTGGAGACTCAAATAA ATGTAGTACAGATGGAACTGCCTATATATCATATGGCCAGTGGGTAGGTTCTAGATATCTTATTGTTATTGACAACTACT GTCTTAGTTGTTGATATCATGTGCCTTCAATCATAATTTATTCACTTGTTGAGCAATTTTCAGTATCGTTTCAGGGTCTT TATTTTAAGTTAGATTACTTAATATATTTATGATGTCATAGAAATCATACTCTCACGGAAAGAAAAACCTAGAACTAATA AGCAGTTATTAATTCTCATTTGTCTTAGGTCGGTGCTATCATCCTATACACCTATGTATATAATATGTTGGCGCCTCCTC CAGAAGGCACCTTTGACATTGATCCTCAAAGTATTCCCATAAAGTGTACTACAAAGAGTGATGGTTCACCTGAACAAGAT CCATTACTTACTCAGGAGGAGGGGGGCTATTTAACAGGTCCGAATGCTTCAAGGAAGTGGAAGGTGAGATTAACTTGATA CACATATATTGATTGTTTTCCTTTTTTTTCGACATAATTTGATGAACCAGAGGATGAAAAATCTACTATTGGTTTCTCTT TTTTATGGTGGTGGTGGGGGGAGTATAGTTTCAGTATTTCAAGTGGATGTCAGTATATGATTTTCTCAAGTATATTTCCC CATAATCTAAATCAACATTTCACCCTTCTTTTTGTACGTGTTGAGTAAATGATGCTTGACTACTTACTGTGCCTTCCAAG TTTGACCATCTTTCATAATTATGTTCTTGAATTTTTGGACGTCTTTTGATATCAAATTTCTTGTTTATGTCCTTCATGAC CAACTTCCAAAATCTCTTTATTTGGCCTCTGCAATTTTGCTGATGGTTTCAGTTTTATATCTATTCCCTCAAATTTCTAG TGATTACATGTTTTCCTTATCACATTTGAATTTTACTCTTCCCTGGGTACAATGTTTACACGTTTGTTCGTGCAGATGAA AGATTGCTTAAGATTCCTATATGAGAAGTTGAAGCTTAAGCAAATTCTTCAACCCCCTATTATTGCATCAGTAAGTTTCT CCTTATTGAATCCATAGTGAGTATTTAGTTTTTCACTTGTTCTCATTTTATATACTGAATTATTCTCAGTCCCTCTCCAT TTTATGATGGTGCACGTGTTTTGAGGTTATATCCTATTTGTCCTGATAGGGTTATCCAACTTATTTATCATGTTTTCTGT ATTATGTAGTAGAGCAAATAAAGAAATAAATGTATCACAGGTTTGCGTGAGAGGGCGTATTAGATATATAGGCTAACATT TGGCGTGAAGAGGTTAATTAAGTGCTTCTGGCAATAAGCACTTATTCATAAGCTAATTTGAGAAGTTCATCGAAACAATT TTCAAATAGCTTATAGGTGAGTATAAGCGCTTATTCATAAGCCAAATATCAGTTTATAGGTAGGTCATAAGCTATTTTCA TAAACTCACTTAAACACTTGTATAAACACTTACACTATTAGATAAGCTCAAATAATCTCTTTCAAACGAGGACATAATGT AAAATCATTCATGTGTCTTCACCTAATAGCATGAGCTTTTGATATAGTAATTCTTGACACATAGCATAGATGAGAAATGC TCTAAACTTTTCCCCCCTCTTACGCTTACCTTTTATTTTTCTCATTTTACTTCTTTGTATAAGCTATATTTATGCCTAGT CTTGTAGATAATTAGAAAAAACTAGGAAATGCTTGTAGAGATTTATCTAATTTCGGAATAGTCAAATACCCACAGCAATC ACCTTATAAATTTGTACAAGTCGAAGTAATGTTTGTAAACTAGTATACAGGTATTTTTGTAAATAGATCACTGTCATGTT AATGTATTTTGGTAAACTAGTTCATTTATTGAGGTATTGGACATTTTTTGCAGATTCTAGCCATGGTTCTTGGTGCAGTC CCATTTTTGAAGAGTCTGATCTTTACTCCTGATGCTCCACTATTCTTCTTCACTGACAGTTGCATGATTCTTGGGTATGC CCATCTAACTTTTAATGAAGTCGATGCTTTTTCGCTCATATAGGTTTTAGTTTGTTTTCTGTTATCAAGTATTCTCTAGT CTATAGAACAACATACACAATTTTTTCCTTGAAACAATTTTTTTGTGGGATAATAACATTTGGCATTTTCTGACAAGTTA ATAAACTCTCGATTAAAAGCTTTATATAGTTTTGGCAGATGGCAGTTGAGCCATTTTCTTTCAGAATTAGGAGCAACAAT GTCCTTCATGTAGTGACTCATAGCTTCATCTAACTATCCTTCAAGTTGAGCCATCCTTTCTGAATCAGAAATAACAGACA TTATTTAGACCTGTAGTGACTCATAGCTTCATCTAACTATCCTTCCAGTAACTTGTAATATCAAATTTTGGTGTACAGCT ACCTAAATATTGTCACAATGAGCCTTTCCAAGTCAATGTTTTCTTTCTGCTCATCAATTGGTTTCGAAAAGGACACCTTA TCCTTCGCTCTCTTACTTTTCCTGTTTTTTCTCAACTTTTATTTTTCGATAAACAATGAGAGGAGTGCTATAACACTCAT TGATTGGTTGAAATTTATGTGTGTCCCACTAAATTGGATGTGGAGCCCATATTTTTAGTGGATCTACATAAATTACAACC AATCAATGAGAGAGTAATGCAAAAAGAGTGATAAAGTGAGCGTTGCAGATATTTTTCAAACAAATAAATTCAGCAAAACA TTTGAATCTTCGCTATCCCGCAATCCATAATAGTATAATACAGAAGAACTTCAAAATGTGTTATGGAACTATGTCAGTTT TAGTTCTGCACTAGAAAATTACATTATTATTTATCAGCCAGAAGTTATTTAGTGATACTTATACAGCTATTATAGGTGAT AATGTCTAATAGTTCTTTTGGTGATCAGGGAGGCCATGATTCCTTGCATTCTGTTGGCATTGGGAGGCAACCTTATTGAT GGTAAAAATTTATGTCATAGTCTCATTAAATCTAATCAATGTCACTTAATATTGTGACTTAAACATCTAAATGGATCATG GTTGGAATTTTATCTTTGTTGCAGGACCTGGAAGTTCCAAACTTGGCCTTCGAACAACTGCTGCTATTGTTTTTGCGCGG TTAGTTTTAGTGCCTCCAGTTGGACTTGGCATCGTAATGTTGGCTGACAAGCTTGGCTTTCTGCCCCCGGATGATAAGAT GTTCCGATTTGTCCTTCTCCTTCAGCATTCAATGCCAACATCTGTCCTTTCAGGTATAGCACACTCTTCTGTCCTAGTTC TACTTCTTTCTGGTAGAGACATTTCCAACATTTTCTAGGGGTTAAAAGTTCAAACTCTGTTATAAATGGATGGAAAGTTG GGAAATAGTTGCTGCTTTGTCCTCAGTCTCAAGTTGTTCCAAGTAATTTTCTTATTAGTGAACAAGTTTGTTAAATCTTA TTATATAATAGTTGATAAAATAAGGGCAAACCTTGTGCTATAAAGCTCCCGCTATGCGCGAGTTCCAGGGAGGGGCTGGG CCCCGTTTTGTGGATATAATGTAGAGACTAGAGAGTCTTACCTTGCCTTTTTGCAAGATGTTGATTCAACTGCTGGAACC TGTGACTGCAAAGTCACATGGCAGCAGCGTTACCATTGCACTGAGGCTCACCCTTATATGGAAATGAGTTTTTTCTGGTG TTGGTTTTGATGCATAAATCTTTTACTTGTTGACAGGTGCTGTTGCTAATTTAAGAGGGTGTGGAAAGGAAGCAGCTGGT GTTCTATTCTGGGTTCATATCTTTGCTATAATCTCCATGGCTGGATGGATTGTTCTATTTCTTAACATACTCTTCTGA
CDS sequence (LotjaGi1g1v0460500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAAACGATGGGGAGGTTTCTGTTGGCTTTGCAAAATCAGGGGGGTTCAGGAGGAGAATCTTTGTTGGGGAGTAT CAAAATTGCAGTTTTGCCTATAGTTAAAGTGTTCACCATGTGTTTCTTGGGGTTTCTTATGGCTTCAAAGTATGTTAACA TTTTGCCTGCTTCTGGAAGGAAGCTCTTGAATGGGCTGGTGTTTACACTCTTGTTACCCTGCTTGATATTCTCCCAGCTG GGACAAGCTGTTACCTTGCAGAAGATGCTTGACTGGTGGTTCATTCCTGTTAATGTTGTTCTTGGTTCCGTATCAGCCTC AATCATTGGTTTTCTTGTTGCCTCCATCGTCCGTCCCCCATACCCTTTCTTCAAGTTTACGATTGTGCATATTGGAATCG GGAATATTGGGAATGTGCCGCTTGTCCTGATTGCTGCTTTATGTCGAGACCAAAACAATCCCTTTGGAGACTCAAATAAA TGTAGTACAGATGGAACTGCCTATATATCATATGGCCAGTGGGTCGGTGCTATCATCCTATACACCTATGTATATAATAT GTTGGCGCCTCCTCCAGAAGGCACCTTTGACATTGATCCTCAAAGTATTCCCATAAAGTGTACTACAAAGAGTGATGGTT CACCTGAACAAGATCCATTACTTACTCAGGAGGAGGGGGGCTATTTAACAGGTCCGAATGCTTCAAGGAAGTGGAAGATG AAAGATTGCTTAAGATTCCTATATGAGAAGTTGAAGCTTAAGCAAATTCTTCAACCCCCTATTATTGCATCAATTCTAGC CATGGTTCTTGGTGCAGTCCCATTTTTGAAGAGTCTGATCTTTACTCCTGATGCTCCACTATTCTTCTTCACTGACAGTT GCATGATTCTTGGGGAGGCCATGATTCCTTGCATTCTGTTGGCATTGGGAGGCAACCTTATTGATGGACCTGGAAGTTCC AAACTTGGCCTTCGAACAACTGCTGCTATTGTTTTTGCGCGGTTAGTTTTAGTGCCTCCAGTTGGACTTGGCATCGTAAT GTTGGCTGACAAGCTTGGCTTTCTGCCCCCGGATGATAAGATGTTCCGATTTGTCCTTCTCCTTCAGCATTCAATGCCAA CATCTGTCCTTTCAGGTGCTGTTGCTAATTTAAGAGGGTGTGGAAAGGAAGCAGCTGGTGTTCTATTCTGGGTTCATATC TTTGCTATAATCTCCATGGCTGGATGGATTGTTCTATTTCTTAACATACTCTTCTGA
Protein sequence (LotjaGi1g1v0460500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAETMGRFLLALQNQGGSGGESLLGSIKIAVLPIVKVFTMCFLGFLMASKYVNILPASGRKLLNGLVFTLLLPCLIFSQL GQAVTLQKMLDWWFIPVNVVLGSVSASIIGFLVASIVRPPYPFFKFTIVHIGIGNIGNVPLVLIAALCRDQNNPFGDSNK CSTDGTAYISYGQWVGAIILYTYVYNMLAPPPEGTFDIDPQSIPIKCTTKSDGSPEQDPLLTQEEGGYLTGPNASRKWKM KDCLRFLYEKLKLKQILQPPIIASILAMVLGAVPFLKSLIFTPDAPLFFFTDSCMILGEAMIPCILLALGGNLIDGPGSS KLGLRTTAAIVFARLVLVPPVGLGIVMLADKLGFLPPDDKMFRFVLLLQHSMPTSVLSGAVANLRGCGKEAAGVLFWVHI FAIISMAGWIVLFLNILF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 28 | 28 | - | – | |
PANTHER | 16 | 418 | 403 | 6.1E-182 | ||
PANTHER | 16 | 418 | 403 | 6.1E-182 | – | |
TMHMM | 27 | 49 | 23 | - | – | |
Phobius | 29 | 49 | 21 | - | – | |
Pfam | 31 | 410 | 380 | 6.4E-77 | ||
Phobius | 50 | 60 | 11 | - | – | |
Phobius | 61 | 80 | 20 | - | – | |
TMHMM | 62 | 84 | 23 | - | – | |
Phobius | 81 | 91 | 11 | - | – | |
Phobius | 92 | 114 | 23 | - | – | |
TMHMM | 94 | 116 | 23 | - | – | |
Phobius | 115 | 125 | 11 | - | – | |
Phobius | 126 | 147 | 22 | - | – | |
TMHMM | 128 | 147 | 20 | - | – | |
Phobius | 148 | 166 | 19 | - | – | |
TMHMM | 167 | 189 | 23 | - | – | |
Phobius | 167 | 185 | 19 | - | – | |
Phobius | 186 | 260 | 75 | - | – | |
TMHMM | 260 | 282 | 23 | - | – | |
Phobius | 261 | 281 | 21 | - | – | |
Phobius | 282 | 286 | 5 | - | – | |
Phobius | 287 | 310 | 24 | - | – | |
TMHMM | 287 | 309 | 23 | - | – | |
Phobius | 311 | 321 | 11 | - | – | |
Phobius | 322 | 349 | 28 | - | – | |
TMHMM | 330 | 349 | 20 | - | – | |
Phobius | 350 | 360 | 11 | - | – | |
Phobius | 361 | 382 | 22 | - | – | |
Phobius | 383 | 393 | 11 | - | – | |
Phobius | 394 | 417 | 24 | - | – | |
TMHMM | 395 | 417 | 23 | - | – | |
Phobius | 418 | 418 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0460500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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