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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0467100 |
Transcript ID | LotjaGi1g1v0467100.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | F-box/LRR protein; TAIR: AT3G48880.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9M2Z5|FBL53_ARATH F-box/LRR-repeat protein At3g48880; TrEMBL-Plants: tr|G7KZ81|G7KZ81_MEDTR F-box/LRR plant protein; Found in the gene: LotjaGi1g1v0467100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:97665535..97666980) extracted from Lotus japonicus Gifu genome v1.2.
GCCGCCCACCCCCAATCGAGAAGCTGAGTAAGAGGTATGTACCTCTTTATTTGCTTTTGTATTCTTGTGGATTGATTAGG ATGAGTTTCATAAAAATCATATGGATTTTGTTAGTCATCCTAATTAACCCTGGATTTTGGTGCTGCATTCACATGGTATT CTGAATCGAGTTTTCTTCAACATTTGTATTTTCGTGTACTTCATAATGTTTAATTGACTATGCAGAATATTAATGTCTTA ATATCAATTGATGCAGGAGAAATCAAGCAATGAAGAAAAGTAACTTAGCTTCAAGCTACTCGAATGATCATTTACCTTAT GATGTTTTGGTGAAAATTTTCATGGTCCTCAATGTTGTAGACCTTGGAATTGTCTCATTAGTTTGCAAATCTTGGAAGAG TGCTAGTAGTGACCGTGCACTTTGGCATAAGGTTGATCTCTCTAGACTCAGCTCTAGATTTTTCTACATACCTAGCAAAT TAAGTTCTTGGAGTGCTTGCGATAAGCATTCAACAAGCACAAAAATGGCTCAATTCTTAAAGCATGCTTTGAATTTGAGC GGTGGAAACATAAGTTGCTTAATATTTAATTTTTATATACCCTTAACTGACATCCAGTTCATCACAGCTGCTCAAAGGTA ACAATTTTAACTTATACTTCTTTATCCCTCTAATGAAAATCTATAGCACATTAGTATAAATTAATAATTATGTGTGTGCG GTCAGTGTACATGATGTTTTCGTTGGAGTGATTTCTATCAATGTTACATATAGTCTCTTATTTTACTATGGTATTTTGAA AAAAAAAATTCTTCTTTTATATGTAGGACTCCAAATCTCAAACGACTAGTTTTACCATTCAAAGGAGACTTGACAAATAA TGGAATCCATACAGCAATGGCATCATGGAGGGGTCTTGAGTCTATGACTATTACCTCCATGATCAACTGTCATCACCTTT TTTCCGCAATTCACAAATGGTGCAAGAACATAGTTGAATTGAAATTCACTTGCGACTTTAATCAATACCATGCTGATGCT TTGATTAAATGTACCCCAAATTTGAAGAGCTTGAGTGTTCGGACCATAATGGTGGAAAAGAGAGCTTTGGAGGATGTACT CGATGGTTTGAAACATTTGAAGGTAGTAAATATATGCCATAGTTTCATTTGGGGTAGAATAGGAGATAACAATCAAATCG GGTTTTTTAGTATGAGTCATCTGAAGAAAAATACGAACGGGCTTATCATGATTTGTTTACTTAAAGCGTGGTGCCTTAGG TGCAAAAGGCTCAAGAACGGGCGTGACAAAAATCCAAGTAGATCAACATATGGATTCTTCTTAGAGGAACTTTGGCGTGA GGATGAGATAGATTCTCTTGCACATTAAATCATGAAACTAATTAATATGTGAATGGTGCATGAACCTTTGTGTATTTTGA ACTCCT
CDS sequence (LotjaGi1g1v0467100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAAAAGTAACTTAGCTTCAAGCTACTCGAATGATCATTTACCTTATGATGTTTTGGTGAAAATTTTCATGGTCCT CAATGTTGTAGACCTTGGAATTGTCTCATTAGTTTGCAAATCTTGGAAGAGTGCTAGTAGTGACCGTGCACTTTGGCATA AGGTTGATCTCTCTAGACTCAGCTCTAGATTTTTCTACATACCTAGCAAATTAAGTTCTTGGAGTGCTTGCGATAAGCAT TCAACAAGCACAAAAATGGCTCAATTCTTAAAGCATGCTTTGAATTTGAGCGGTGGAAACATAAGTTGCTTAATATTTAA TTTTTATATACCCTTAACTGACATCCAGTTCATCACAGCTGCTCAAAGGACTCCAAATCTCAAACGACTAGTTTTACCAT TCAAAGGAGACTTGACAAATAATGGAATCCATACAGCAATGGCATCATGGAGGGGTCTTGAGTCTATGACTATTACCTCC ATGATCAACTGTCATCACCTTTTTTCCGCAATTCACAAATGGTGCAAGAACATAGTTGAATTGAAATTCACTTGCGACTT TAATCAATACCATGCTGATGCTTTGATTAAATGTACCCCAAATTTGAAGAGCTTGAGTGTTCGGACCATAATGGTGGAAA AGAGAGCTTTGGAGGATGTACTCGATGGTTTGAAACATTTGAAGGTAGTAAATATATGCCATAGTTTCATTTGGGGTAGA ATAGGAGATAACAATCAAATCGGGTTTTTTAGTATGAGTCATCTGAAGAAAAATACGAACGGGCTTATCATGATTTGTTT ACTTAAAGCGTGGTGCCTTAGGTGCAAAAGGCTCAAGAACGGGCGTGACAAAAATCCAAGTAGATCAACATATGGATTCT TCTTAGAGGAACTTTGGCGTGAGGATGAGATAGATTCTCTTGCACATTAA
Protein sequence (LotjaGi1g1v0467100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKSNLASSYSNDHLPYDVLVKIFMVLNVVDLGIVSLVCKSWKSASSDRALWHKVDLSRLSSRFFYIPSKLSSWSACDKH STSTKMAQFLKHALNLSGGNISCLIFNFYIPLTDIQFITAAQRTPNLKRLVLPFKGDLTNNGIHTAMASWRGLESMTITS MINCHHLFSAIHKWCKNIVELKFTCDFNQYHADALIKCTPNLKSLSVRTIMVEKRALEDVLDGLKHLKVVNICHSFIWGR IGDNNQIGFFSMSHLKKNTNGLIMICLLKAWCLRCKRLKNGRDKNPSRSTYGFFLEELWREDEIDSLAH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 19 | 19 | - | – | |
PANTHER | 3 | 307 | 305 | 3.7E-101 | – | |
PANTHER | 3 | 307 | 305 | 3.7E-101 | – | |
Gene3D | 5 | 54 | 50 | 8.6E-11 | – | |
ProSiteProfiles | 9 | 55 | 47 | 11.908 | ||
Pfam | 13 | 57 | 45 | 4.7E-11 | ||
SUPERFAMILY | 13 | 80 | 68 | 5.36E-15 | ||
SMART | 15 | 55 | 41 | 5.0E-7 | ||
Phobius | 20 | 39 | 20 | - | – | |
Phobius | 40 | 309 | 270 | - | – | |
Gene3D | 55 | 280 | 226 | 1.9E-10 | ||
SUPERFAMILY | 94 | 255 | 162 | 1.22E-6 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0467100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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