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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0469100 |
| Transcript ID | LotjaGi1g1v0469100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT3G07870.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SFC7|FB135_ARATH F-box protein At3g07870; TrEMBL-Plants: tr|I3SBY9|I3SBY9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0469100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:97973080..97975205) extracted from Lotus japonicus Gifu genome v1.2.
AGAGTCTTAGGGTAGCGGCGGCCATGAGAAAGAAAGGGGTTCCAAAGAGATTCACTGGATCCCCAGGGATCAAAGTTGCT GATCCAGAAATCCAACACCTTGAAACTTCTTTCACCGATCTTCCATCACACATCACTATCCAAATTCTTCTAAGACTTCC CCTTAAGTCTATTCTCAAATGCAAATGTGTTTGTAGAAGTTTGAAATCATTGATCTCAAACCCAGAATTCACCCATATGC ACTTCAAGGAAGCGAAACCTGGTGTCATGATTCGGTCCAATGATTCAAGAACCCTACACTTACTTGATCAATTGGATATG TTTGAAGATGGTGTTGATAAAGAAAAGGTACTATTTTTTGGTTGTTTTCGTATCTTTTTCAACCATATATGTATGAATCC CTGGAAGCTTGACCCTAAATTCAAGCTCCCTTTTCGTGAGAGCAATTATGGTGTGGTGAATTCATGTAACGGCTTTATTT GCTTGTGTGATCCATGGAATAGTAATCCTTTGGCTGTGAGCAACCCAGCTACAGGTGAGTTCATAAGACTTCCAGATTCT CACAGAGTTGATGATGAAAGTCATGAAACCCTAATATATGTTGGTTTTGGTTTCCAACCTAAAACTAATGAATATAAGGT GGTGAGAATATTGAAGGAATCACCGAGACGTAGTACCTTTTTGTGGTATTCTGAGGATCTGGTTGTTCAAGTTCATACTG TAGGAACATCAACATGGAAGAATGTTGTTGTTGATCCCAGGCTTTTCATTAGGTACCTTACATTTCCCACTTGTGTGAAG GGGGTACTTCATTGGATAGTTTCTCATGATTGGAGAGGTTCAATATTGTGTTTCAACTTTGAAAGTGACAGATTTGAATA CCTCCCACCTCCTCCTGATGTATTTAAAAACAATGGAATCACAGATACCGAAAGGATAAGCATGGCAGAGTTAAAGGGAT TTCTCTACATATGTGATTCATCTTCTAATGATACTCCTGTTGTAGTGTGGATTATGAAGGAATATGGTATTGGAGAATCC TGGACAAAGATTTTCAGCGTTGACACTATGGGCGAACATTGTTGGCCTTTAGGTGGTTTGTATTGGCCTGTGAAACATTT TGAGAAGGTTGATGCCATATTGATGTTTCATTCTGACAATTACTTTATCTACTATGAACCCAAAAGGTCTTTTTTCAAGA GTCTTATGGTTCATGGGACTGGATCGGCATTTGAAGTTTTTTCTCACATTCCCAGCCTCATCTCACTGAAGGATGTTGTG AAAGAGGACAATGTAGAGATTCTCAATGTCTACTCAAGGTAAGAACATAGGTTTTAATATTTTATTGACTAGTTGAATCT AATAGTGCTTTAAAATCACAAGAACTTTGATATTGTTAATCATAGGACATCAAGTGAACATGTGTGAGTTTCTATGTTTC CAACATTTATTTGAGCTGGTTCTTTGGTTTATTGTCAGGAAGAGAACATTATTTCTACTGACGAATATTGTTACTTAAGG TCAAGATATTTTGTGAATCAAGTGCTTATGCAAATGAACTATATGTATAATTTTATCTGCTTACTTTTCTACTTTCATTT ACATCTTAACTCCTGTATTTTATGAAAAAAAATCCATGTGGATACATACTTGCATTCCTAATTACATATTTTAAACTTTC TTTATAACTAATGTATTGATGGAGGTGATTATGGACAATTGCTTGAATTTTTAATTCTGGTATCTTCTTTTGCTGTGAAG TAGTAGACATTATATCAAAGAGAAATGGTAGATACAGTTGATCATTTAGATCCTCTGCTACGTGCAATTGTAGCCATATT ATTGTTCACTAATATTGGTATCATTTAATATAGGCGTGCAGAGTAGTATTGTTTTGAAGATGAAAATGAAGTACTTTTCT TGGCTAAGGAGATTATTGATAATGGAATTTTACCTCACTTGACGGGATGGTGAAGAATAAAGTGAAGAAAACAACTACAA AGAAGTAATTGTCATTCTGGAAAAATGTGCTATATCACAATTTTGGGTTCAACTATTTGTTATTTTGGGAAACTATATCT TGTCCTAGCTTAAAAAATTTATGTTTTGTGTAAACTTTAATCTAGA
CDS sequence (LotjaGi1g1v0469100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAAAGAAAGGGGTTCCAAAGAGATTCACTGGATCCCCAGGGATCAAAGTTGCTGATCCAGAAATCCAACACCTTGA AACTTCTTTCACCGATCTTCCATCACACATCACTATCCAAATTCTTCTAAGACTTCCCCTTAAGTCTATTCTCAAATGCA AATGTGTTTGTAGAAGTTTGAAATCATTGATCTCAAACCCAGAATTCACCCATATGCACTTCAAGGAAGCGAAACCTGGT GTCATGATTCGGTCCAATGATTCAAGAACCCTACACTTACTTGATCAATTGGATATGTTTGAAGATGGTGTTGATAAAGA AAAGGTACTATTTTTTGGTTGTTTTCGTATCTTTTTCAACCATATATGTATGAATCCCTGGAAGCTTGACCCTAAATTCA AGCTCCCTTTTCGTGAGAGCAATTATGGTGTGGTGAATTCATGTAACGGCTTTATTTGCTTGTGTGATCCATGGAATAGT AATCCTTTGGCTGTGAGCAACCCAGCTACAGGTGAGTTCATAAGACTTCCAGATTCTCACAGAGTTGATGATGAAAGTCA TGAAACCCTAATATATGTTGGTTTTGGTTTCCAACCTAAAACTAATGAATATAAGGTGGTGAGAATATTGAAGGAATCAC CGAGACGTAGTACCTTTTTGTGGTATTCTGAGGATCTGGTTGTTCAAGTTCATACTGTAGGAACATCAACATGGAAGAAT GTTGTTGTTGATCCCAGGCTTTTCATTAGGTACCTTACATTTCCCACTTGTGTGAAGGGGGTACTTCATTGGATAGTTTC TCATGATTGGAGAGGTTCAATATTGTGTTTCAACTTTGAAAGTGACAGATTTGAATACCTCCCACCTCCTCCTGATGTAT TTAAAAACAATGGAATCACAGATACCGAAAGGATAAGCATGGCAGAGTTAAAGGGATTTCTCTACATATGTGATTCATCT TCTAATGATACTCCTGTTGTAGTGTGGATTATGAAGGAATATGGTATTGGAGAATCCTGGACAAAGATTTTCAGCGTTGA CACTATGGGCGAACATTGTTGGCCTTTAGGTGGTTTGTATTGGCCTGTGAAACATTTTGAGAAGGTTGATGCCATATTGA TGTTTCATTCTGACAATTACTTTATCTACTATGAACCCAAAAGGTCTTTTTTCAAGAGTCTTATGGTTCATGGGACTGGA TCGGCATTTGAAGTTTTTTCTCACATTCCCAGCCTCATCTCACTGAAGGATGTTGTGAAAGAGGACAATGTAGAGATTCT CAATGTCTACTCAAGGCGTGCAGAGTAG
Protein sequence (LotjaGi1g1v0469100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRKKGVPKRFTGSPGIKVADPEIQHLETSFTDLPSHITIQILLRLPLKSILKCKCVCRSLKSLISNPEFTHMHFKEAKPG VMIRSNDSRTLHLLDQLDMFEDGVDKEKVLFFGCFRIFFNHICMNPWKLDPKFKLPFRESNYGVVNSCNGFICLCDPWNS NPLAVSNPATGEFIRLPDSHRVDDESHETLIYVGFGFQPKTNEYKVVRILKESPRRSTFLWYSEDLVVQVHTVGTSTWKN VVVDPRLFIRYLTFPTCVKGVLHWIVSHDWRGSILCFNFESDRFEYLPPPPDVFKNNGITDTERISMAELKGFLYICDSS SNDTPVVVWIMKEYGIGESWTKIFSVDTMGEHCWPLGGLYWPVKHFEKVDAILMFHSDNYFIYYEPKRSFFKSLMVHGTG SAFEVFSHIPSLISLKDVVKEDNVEILNVYSRRAE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 20 | 128 | 109 | 2.3E-8 | – | |
| ProSiteProfiles | 27 | 77 | 51 | 11.432 | ||
| Pfam | 29 | 70 | 42 | 5.8E-9 | ||
| SUPERFAMILY | 29 | 86 | 58 | 1.57E-12 | ||
| PANTHER | 32 | 355 | 324 | 6.5E-41 | – | |
| PANTHER | 32 | 355 | 324 | 6.5E-41 | – | |
| SMART | 33 | 73 | 41 | 3.3E-7 | ||
| TIGRFAM | 146 | 387 | 242 | 7.2E-27 | ||
| Pfam | 257 | 350 | 94 | 1.8E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0469100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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