Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0469200 |
| Transcript ID | LotjaGi1g1v0469200.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing protein 4; TAIR: AT2G45720.1 ARM repeat superfamily protein; Swiss-Prot: sp|O22193|PUB4_ARATH U-box domain-containing protein 4; TrEMBL-Plants: tr|I1L6Q4|I1L6Q4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0469200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:97983447..97987361) extracted from Lotus japonicus Gifu genome v1.2.
TTGAATGTTTTGATTTTTGAATTGTTGGTGAACTGAACCTGTCAATGTTTTAAATTGCTGGTAGTTAATCTCTTTCTTTT TTGTATATTTTGACTCTAGCTAGGTGGGAAGATTCTTCTGATTTCTTCAGTGGATTTATTACTATTAACTGAGATTATGA GCTTTTCATGTCAGTTTCACAGTTAAGGAGCAGAAACCGTTTCTGGGTCTTGCTGATTCTGACAAAACTCTTTATGGGTC GTTGTCTTCATGTCATTTGAGCATGAATGACTCGATTTTTATGAGTGTCATCTCATGGTTGCTGATTGGAGAAGCATGAT TGGGAGTTGTTAAAGCAAAGTCTTGGGGTGGTTGGTGTATCAAATTTTGAGGCATTTCTGAGATCATACATTGGTGTCTG TCTGAGAGAGAAAAAGAGAGAGAAAGAGTTTGAAGATGAAGCCACATTGGGTTGCTTTCTCAGTTACTGATTCTTAAAGG TTGGTTGGTCCTTAATTTTATCATTATTATAATCTTGGGTTCTTTGCTTCAATCTACTGTTTCTGGAAAGAAAAGTGGTG CTCTTTTGCTTCCTTTTTTCTTTAATTTTTGTTTCTATGAATGTTAGATTTTTTCTTTTCTGAACAAAGTTTCTAACTTG GTAGTAGTTGCTACCATGGTTTTGGGTTTACAGTAATTCTGGGAAAGAAGAGTGTTTTGGGCATCATTTATGGAGGATAA TTTTGGGCAAGTGAAATTAATTTGAGGTATATAATATTGAAATGAAAAATTATTACTTTTAATTTTCACCACATTTATAT TTTTCTGGTGATGATTCATTTTACGTACACGGGTATATAACTGTAGATAGAGACTTGTGTCTTCCTTTTGAAGGAAAGTC TTTCACTTTCTCATACCAGAAGCCCAATTTATGAGGACAAAATGGGAAGACAAAACACAGCTAACAGTTCTACTTTCCTC TGTCTCTCTTAGCCGTTCATATGAGTCAAAATCAAGCTGACAAAGCAAACCTAACCTTCATGGTTAAAAAGTAAAGTTGG AGATTTGTTTCCTATTGACTAATATATCCCTCTAAAGAATACCAGTATTATACTTGTGGTGTTTATTTGTTTATCTATTG GTACAATGTGAATTTGTTTTTTCTAAAATTAATAACTATTTTGGATAGATAAATATGTAAAGACATGTTAGTCAGTAACG ACATACCACTTTTTCTCAGAAAGTTGTGTGCTCAATTCTCATTGTCGATGTAAAAGCGTGTTAACGGGTGATTTATAAGT ACCTGGGCAAATGATCCTAGAGGCGCTCGCTTTGTCCTGCGCTGGTATCCAGAGCTAAACTCACTCATACTTTATCCAAT ATAAATTACTAGAAACCATACACATTTGTAGCATGTTTGGATAAGTTTCTTTCCTTGTAATTACTTTTGGCCTACAAGCC TCTTTCCATCATTGGTTTTGGTTTTATAATAATGAATTTTCAAACATGCACTTGTATATACCATTTGTTATGTATGTATT TTGGGCCTTACATGGATGGGTACTTTTGGAATTTCACCACAGTATCTACCGACTGCTTCTATACCCGTAGAAAAACATTC TATTTTGCTATAGTTTAACTAGTTGTTACTACTTAGTAACGAATTTAATATATGGTTAGGATTTCCCAAAGGTATTAATT CACTTTAGAGGAAAGACTAGTGGCCTAGTGGGGCATGGTTTAGGTACTTCAGTTTTGTTGGACAAGTCATGCTTTCAGTA AAACGAGCTTTGTATGAGATTGATCATAGGAAAGATTCTCGAAGCTGTTGGGCCATTTGTTTTTTTGTGCCTCACAATTT TCCAATTGGAGTCTTAATTTATAATTTAAGTATATCGTGATTGCAACTGCTCCACAACCTTTTGATTTTTCTATGCTAAT ATCATCTTTTCTACTTGCAAATTGGCATTTGAGTCATTGAAGCTTTGGTTTTTCTTGTATCTCATTTGTTGCAGCAGCTA TAATCATCGATTCTGCTCCTACCAAATCAAAATCATGGTGGAAGATAATGATGTTGCAATTGAATCACGTTCCACAGAAG AATGGTTGTTGCATACACAAGAACTTGTACCTGTTGCAGTTAACAAAGCAAGAGAGGTTAAGGTTTTTTCTTGCAGATGG AAGGTGATCATTTCGAAATTAGAACAGATCCCGTCGTGTTTATCAGACTTATCAAGCCATCCATGCTTCTCAAAGAATGC TCTTTGCAAAGAACAGTTGCAGGCTGTGTCAAGAACACTCATTGAAGCAATTGAATTGGCTGTGTTCTGTGTGAAGGAAA GGTATGAGGGTAAGCTTCGCATGCAGAGTGATCTCGATGCATTAACCGGGAAGCTCGATTTGAATTTAAGGGACTGTATG CTTCTGATCAAAACTGGTATGCTTGGCGAGGCTTTTGCTTCATTAGCGCCAGCTGTGGTAGAATCAGATGTTGCTGCTAC ACACAACAACATAAGGGAATTGCTCGCGCGCCTTCAGATCGGTCACATGGAAGCAAAGCATAAAGCTTTAGACAACCTTG TTGAGGTCATGAAAGAAGATGAGAAGAATGTTTTATCCGTTCTTGGTCGGAGTAACATTGCTTCTTTAGTTCAATTGCTC ACAGCAACATCACATAGGATAAGAGAGAAAGCAGTAACGGTTATCTGCTCGCTCGCGGAATCTGGAAGTTGTGAGAATTG GTTAGATTCTGAAGGGGTTTTGCCTCCTCTCATAAGGCTTGTTGAATCAGGCAGTGCTGTGGGGAAAGAGAAGGCTGCAA TTACCCTTCAGCGGCTGTCAATGGAGGCGGAAACTGCGCGTGCGATCGTTGGAAACGGTGGTGTTCGCACGCTGGTTGAG CTTTGTCAAACCGGTGACTCCGTGTCACAAGCTGCTGCAGCTTGTGCTCTCAAGAACATATCAGCAGTTCCTGAGGTGAG ACAAACTTTAGCTGAAGAAGGGGTTGTGAGGGTTGCCATCAATTTGTTGAACTGTGGAATGTTGTTAGGTTCTAAAGAGT ATGCTGCTGAGTGTTTGCAGAATCTCACTGCAAGCAACGAGAATTTAAGGAGGAGTGTTGTGTCAGAAGGTGGAGTGAGA AATCTTCTAGCTTATCTTGATGGTCCACTTCCTCAGGAATCTGCTGTTGGAGCATTGAGGAATCTGGTCGGATCGGTCTC GGATGAAACTTTGATTTCAATGGGGCTCCTTCCGCGCTTGGTTCATGTTCTGAGGTCTGGATCTTCCAGTGCTCAGCAGG CTGCCACATCCGCGATTTGCCGGGTTTGCAGGTCAACAGAGATGAAGAAATTGGTTGGTGAAGTGGGCTGCATTCCTCTC CTTGTGAAGATGCTTGAGGCTAAATCTAACAGTGCTAGGGAGGTTGCTGCACAGGCAATTGCAAGCTTGATGGTTCTGTC ACGGAATCGCGGGGAAGTTAAGAAGGATGGTAAGAGTGTGCCAAATCTGGTTCAGTTGCTTGATTCAAGTCCTCAAAACA CTGCAAAAAAGTATGCAGTTTCTTGCCTTGGATCACTTTCTTCTAGTAAGAAGTGTAGGAAGCTTATGATCTCATATGGG GCAATTGGGTATCTTAAGAAACTTACTGAGATGGACATTCCAGGAGCTAAAAAGCTACATGAGAGGTTGGAAAGAGGGAA ATTGAGGAGTTTGTTTAGCAAGAAATAGAGAGTGAAAAAACTGTTACTTCTTGTATCATGATTCATGAAACAAAATGGAT AAGACTGCTAATCTATGCAATGTAATCAATGTTAGATTGTATTATAAATATTTAAACTTTTAATGTACACACTTTACTCT CTTTCTCTCATATGTTGGTTTTGGTTTAAGACAGATATCTTCGAAAGAAACAAAAATCTTGTTTGAGTCAGCAAT
CDS sequence (LotjaGi1g1v0469200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGAAGATAATGATGTTGCAATTGAATCACGTTCCACAGAAGAATGGTTGTTGCATACACAAGAACTTGTACCTGT TGCAGTTAACAAAGCAAGAGAGGTTAAGGTTTTTTCTTGCAGATGGAAGGTGATCATTTCGAAATTAGAACAGATCCCGT CGTGTTTATCAGACTTATCAAGCCATCCATGCTTCTCAAAGAATGCTCTTTGCAAAGAACAGTTGCAGGCTGTGTCAAGA ACACTCATTGAAGCAATTGAATTGGCTGTGTTCTGTGTGAAGGAAAGGTATGAGGGTAAGCTTCGCATGCAGAGTGATCT CGATGCATTAACCGGGAAGCTCGATTTGAATTTAAGGGACTGTATGCTTCTGATCAAAACTGGTATGCTTGGCGAGGCTT TTGCTTCATTAGCGCCAGCTGTGGTAGAATCAGATGTTGCTGCTACACACAACAACATAAGGGAATTGCTCGCGCGCCTT CAGATCGGTCACATGGAAGCAAAGCATAAAGCTTTAGACAACCTTGTTGAGGTCATGAAAGAAGATGAGAAGAATGTTTT ATCCGTTCTTGGTCGGAGTAACATTGCTTCTTTAGTTCAATTGCTCACAGCAACATCACATAGGATAAGAGAGAAAGCAG TAACGGTTATCTGCTCGCTCGCGGAATCTGGAAGTTGTGAGAATTGGTTAGATTCTGAAGGGGTTTTGCCTCCTCTCATA AGGCTTGTTGAATCAGGCAGTGCTGTGGGGAAAGAGAAGGCTGCAATTACCCTTCAGCGGCTGTCAATGGAGGCGGAAAC TGCGCGTGCGATCGTTGGAAACGGTGGTGTTCGCACGCTGGTTGAGCTTTGTCAAACCGGTGACTCCGTGTCACAAGCTG CTGCAGCTTGTGCTCTCAAGAACATATCAGCAGTTCCTGAGGTGAGACAAACTTTAGCTGAAGAAGGGGTTGTGAGGGTT GCCATCAATTTGTTGAACTGTGGAATGTTGTTAGGTTCTAAAGAGTATGCTGCTGAGTGTTTGCAGAATCTCACTGCAAG CAACGAGAATTTAAGGAGGAGTGTTGTGTCAGAAGGTGGAGTGAGAAATCTTCTAGCTTATCTTGATGGTCCACTTCCTC AGGAATCTGCTGTTGGAGCATTGAGGAATCTGGTCGGATCGGTCTCGGATGAAACTTTGATTTCAATGGGGCTCCTTCCG CGCTTGGTTCATGTTCTGAGGTCTGGATCTTCCAGTGCTCAGCAGGCTGCCACATCCGCGATTTGCCGGGTTTGCAGGTC AACAGAGATGAAGAAATTGGTTGGTGAAGTGGGCTGCATTCCTCTCCTTGTGAAGATGCTTGAGGCTAAATCTAACAGTG CTAGGGAGGTTGCTGCACAGGCAATTGCAAGCTTGATGGTTCTGTCACGGAATCGCGGGGAAGTTAAGAAGGATGGTAAG AGTGTGCCAAATCTGGTTCAGTTGCTTGATTCAAGTCCTCAAAACACTGCAAAAAAGTATGCAGTTTCTTGCCTTGGATC ACTTTCTTCTAGTAAGAAGTGTAGGAAGCTTATGATCTCATATGGGGCAATTGGGTATCTTAAGAAACTTACTGAGATGG ACATTCCAGGAGCTAAAAAGCTACATGAGAGGTTGGAAAGAGGGAAATTGAGGAGTTTGTTTAGCAAGAAATAG
Protein sequence (LotjaGi1g1v0469200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVEDNDVAIESRSTEEWLLHTQELVPVAVNKAREVKVFSCRWKVIISKLEQIPSCLSDLSSHPCFSKNALCKEQLQAVSR TLIEAIELAVFCVKERYEGKLRMQSDLDALTGKLDLNLRDCMLLIKTGMLGEAFASLAPAVVESDVAATHNNIRELLARL QIGHMEAKHKALDNLVEVMKEDEKNVLSVLGRSNIASLVQLLTATSHRIREKAVTVICSLAESGSCENWLDSEGVLPPLI RLVESGSAVGKEKAAITLQRLSMEAETARAIVGNGGVRTLVELCQTGDSVSQAAAACALKNISAVPEVRQTLAEEGVVRV AINLLNCGMLLGSKEYAAECLQNLTASNENLRRSVVSEGGVRNLLAYLDGPLPQESAVGALRNLVGSVSDETLISMGLLP RLVHVLRSGSSSAQQAATSAICRVCRSTEMKKLVGEVGCIPLLVKMLEAKSNSAREVAAQAIASLMVLSRNRGEVKKDGK SVPNLVQLLDSSPQNTAKKYAVSCLGSLSSSKKCRKLMISYGAIGYLKKLTEMDIPGAKKLHERLERGKLRSLFSKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 557 | 556 | 0.0 | – | |
| PANTHER | 2 | 557 | 556 | 0.0 | – | |
| Gene3D | 150 | 372 | 223 | 4.9E-32 | ||
| SUPERFAMILY | 153 | 534 | 382 | 2.43E-44 | ||
| SMART | 182 | 222 | 41 | 90.0 | ||
| ProSiteProfiles | 234 | 276 | 43 | 9.012 | ||
| SMART | 264 | 304 | 41 | 0.46 | ||
| Pfam | 269 | 304 | 36 | 7.2E-5 | ||
| SMART | 305 | 346 | 42 | 67.0 | ||
| SMART | 347 | 386 | 40 | 9.1 | ||
| Gene3D | 373 | 547 | 175 | 4.0E-26 | ||
| SMART | 387 | 426 | 40 | 17.0 | ||
| Pfam | 392 | 426 | 35 | 3.2E-4 | ||
| SMART | 427 | 467 | 41 | 0.51 | ||
| Pfam | 428 | 465 | 38 | 2.4E-4 | ||
| SMART | 468 | 510 | 43 | 27.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0469200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…