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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0473200 |
| Transcript ID | LotjaGi1g1v0473200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB-related transcription factor; TAIR: AT3G61250.1 myb domain protein 17; Swiss-Prot: sp|P80073|MYB2_PHYPA Myb-related protein Pp2; TrEMBL-Plants: tr|A0A151TBJ1|A0A151TBJ1_CAJCA Protein ODORANT1; Found in the gene: LotjaGi1g1v0473200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:98362717..98366687) extracted from Lotus japonicus Gifu genome v1.2.
ATTGCACCTTCCGATCCATTAAATGTTCACGTCCTCCTCCTTTAACTGTCCGTGTTGGTTTTTGATCCTACACTGACTTT TCTGGAACAGAATCCTCCATTAATAACTTCCATTTTTCTCAACTCTGTCTCTGCCATTAATGCAATCACTATCATCTTGA CTACTTATGTGCAAAATGAAAACCAAAGCAAAATCTACACCCCACCATTATTAAACTCTCTTTCACGGTTTGTGCAATTA TTTTTTTGTCTCAATGATGATGCAACTTCTCAATGCTACACAGCACATGCATTCATTGCACAAACCAGCTTGAAACTCGC TGATACTGCTTGCAATTGCAAAGCCCCTGTCCAATAACAATGCCACCTCAAATCCCTTCAGATAGATAAAGGCATCAAGA ATATTTGTCTCCAAATGATGTTTCATTTTCTGCCTCAACTTGTGAAATTATGTCACAAGTAGTTAAAAAAATGTATTAAA ATGCATGGATATAACATTTATAACCTTTTGATGGTTTTTATTTGACGTGACAATTTCATTTATGTGATAGAAAATGAGAC ATCATTTTAAGACAATAGATCGACTTTTTAATCTCGCATAAACATCCACCTTTTTTAACATCCATGTGCTTCTCTTTTTA TACTCTCATTCATTGCTTTGAGTCTTCATCATAGTGCTTTATGAGGTGTTTCTTTAGTGTTGGAAACATAGAGAGGAATT ATCTGAAGGTGCGAACTTCATTTAATAATGGGAATTCTGCATTTTTTTCTTGTTCCCTTTACTTTGTTAATGTGATATTG CGGTGAGTGCTGGTGAAAATTTGAGAAAGAATAATGGGAAGGACACCATGTTGTGACAAGAAGGGTTTGAAGAAAGGACC ATGGACAGCTGAAGAGGATGAAGTTCTTACTAATTATATCAAGAAGAATGGTGGTCATGGAAGCTGGCGTTCTCTCCCCA AGATGACAGGTTTTATCCTTTGCCTATCTCTTTTGCATATAGCCTCTGAAGAATTGATTCTAAAGACGGAATCAATTCTG AGATAAAGCTTATGTGAGTAGATTTTAGGTGCCAAAATAACTGTAGGGGAAAATAAGTTGATTCAGCTTGCAAATTCATT AAAAAATTACAGTGAAGTTAAAATCATAGTAAACAAAAGCAAAAGCAAGTTCTCTTAATTTTTACTTCTGTCCACCATGA TTTTACTTTTTATTATGGTTTTCAAACGAGTTTACAAATATGAATAAGAGTTACAATAAATATGTTACATAAAACTCTCT AACCTCTTTTTGAAATTGGCTTTATTCCTTGTTTCTAAGTGACTTGGATGATTTTTGTGTGTCTCAATAATGGTGGCATA TTTTAACCACTACTGATCTATTAGAAGTTTAGAACAGAATGCTGGGGTTGAAGAATAAGAAAGTTTTTATCTTTGGCTCT ACTTAAATAGTTAAATTCATGGTAATATTTAAAACCCTTAAACAAGTTATTTGATGCTATCACTCTTAACTTCTTTGTCT CCTACTCTTCTTTATTCATGTTCTTAAAAGTTAAAAGGCAGGAATAATATGAAAGGAATGTAATTTGAAGTACCAGACAA ATTTAATGCAGTGCTTGGAGAATAATTATATCATGTTGTTGACCATTTTTTTTCTGTTTTATTCTGTCTGTATATAACCA AAATTTTAGCTTCAATTTTTATTGATTGTAGATTTCAACTGCAGATAAGCTAGCCACCAGTCATGCTGTGACTCCTCAAT TTTGCACACTTAGCAAAATTTTGTTCTTTAATTTCCTTCTAACAATGTTATTTGTCAAACAAACAAAAGAAAATATTTGA TTATTTTTTCTGTTTTTCAACCTGATACATAAGACCTTCATCATGTTCCTGAGATTATGAGACTGTTTTTTTTTTTCCTT TTCAGGTCTTCTTCGTTGTGGTAAGAGTTGCCGGCTTCGGTGGACAAACTATCTGAGACCTGACATTAAACGTGGTCCAT TTACTCCTGAGGAAGAAAAACTAGTCATTCAGCTTCATGGCATCCTAGGAAATAGGTAAACAAACTCAGCATTTGAGTGC ATGATGTTTGGATATACGAAAACGCTAAAATCATAATCATAATGGACAGAAGTAAAAGATAAGAGAAGTTACTTCTATCT ATCATGATTTTAGCTCACATGATATTTTACTGTGCATCTAGCATGAGTTTTTGTTTTCTACCATACCTTTTCTTTAGGTA GAGAAGTATCCATTTTTGTCTTATCACAAATCCATGATGTTTACATTCCCCTACATGTGCATACAGAAACAATACGCAAC AAATGATGAATATATATTTATATGTTCTTATTAAGCTTTTTTGGTCCCATAAAAATATCTTACTTTGCTGTTTTGATTTT AGACTACTTTGTAATAAAATCAAGATAAGGTGCATTATAGCCCGTTTGGATGCCAATAAAAAAACTTATTAGAGTTTATT ATTTAGTATTTTTTTAGTAGGTAAGCTCCAATAAGCTTTAATAGCAACAAGGGTTACATGTTTGATTACCCTTAAACAAA GTCTCGGTTCGAGTCCTGTTTATATAAAGAATTTCACTAAGAGGCTAGTCTAATAGAATGTGAATGTTTTGACTCGAACA TAATTGTCTCTCGTGAATGATACTTCTATTTGGAAAAAAAAAAAAAAAAACTCTTTTGTTATATGCTACAGTGAACTTAC AAGATAAGATCGGATAGTGATCCGGCATTAAATCTTCACCCAAAATTTTAAGGTAATGCGTTTGTGGGTTTTGACACTAA TACTGTCTTTGGTTAACTCTTTCTCTTATTACTTGTACTTCAATGTTCAACATTATATATGTTATAATTTTTATTTTGAG TAGACAAATTTCACAATGTTCTCAGGTGGGCTGCAATTGCCTCTCAGCTACCAGGAAGAACTGACAATGAAATAAAAAAC TTTTGGAACACCCACTTGAAGAAACGTCTCAAAGCCCTGGGTCTTGACCCAAAAACCCACCAGCCCAACCATGCACCTTC TGCATCATCTTCCATTTCCACACGCCACATGGCTCAATGGGAAGGTGCAAGGCTTGAAGCAGAGGCAAGGCTTTCAAGCC TCAACACCACCAAAACAACTCACCACTGTGACCACTTCCTCCGCATGTGGAACTCTGAAATTGGAGATTCATTTCGCAAC TTTCACAAGCCAGATCATAATCAAAACAAGAACATTAACAGCTTCTGCTTGAGTCCTCTTTCTGCAGGATCATCTTCCAA CAAATGTGACTCAGTTTCTGCTGTTACTACTAATGCTGCTGACCCATTTGGATCCTCAAACAATGCTGTGAAACAAGAGT TGTTGTGTGCTGAAGAAGATGTGGTTCAGCATCATGGGTCTGATTCATCATGCTCTAATGACTTGGAGGACTCATCAGAC ACTGCTTTGCAGCTCTTACTAGATTTTCCTATCTACAATGACATGAGCTTCTTAGAAGGAAACTCTTTTGTTTGTCCCCT CTAGCAGGGATTGAAACTGCGGTCGCAGTCGTGGTTGCTGCTACATCGTGGAATTGTAGACAAATGTTGGTTAATGCGAC ATCAATTGCAGTCCTAATGCCAATGCGGTGACTCTAAAATCCGTTTACGCTACCTGCATTTGGGATTGCAGACTACAATT TGAAACCGTGCCCTTTAGTGTGTCTGCTTAAAGTTGTGTGTTTTTAGCTTTTGGTTTGATGTTTTTGTAGTGTTGAAGAA TTGTTAGAATTAGTGAATGTTTTTTATATACTTGGAAAATCACGGTGAGCTAAAATGATGGTGGACAGAAGCAACTATCC TTAGTAGTTTTTACTTCTTTCCACCGTGATTTTACCTTCTCTAAAATATTCTACTGCGTATCCGAACATTTTCTTATATG AGTTTGTGAATGGTTGAACATAGTGGTTATTTATTAGTTGTGAGATTGAGG
CDS sequence (LotjaGi1g1v0473200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGGACACCATGTTGTGACAAGAAGGGTTTGAAGAAAGGACCATGGACAGCTGAAGAGGATGAAGTTCTTACTAA TTATATCAAGAAGAATGGTGGTCATGGAAGCTGGCGTTCTCTCCCCAAGATGACAGGTCTTCTTCGTTGTGGTAAGAGTT GCCGGCTTCGGTGGACAAACTATCTGAGACCTGACATTAAACGTGGTCCATTTACTCCTGAGGAAGAAAAACTAGTCATT CAGCTTCATGGCATCCTAGGAAATAGGTGGGCTGCAATTGCCTCTCAGCTACCAGGAAGAACTGACAATGAAATAAAAAA CTTTTGGAACACCCACTTGAAGAAACGTCTCAAAGCCCTGGGTCTTGACCCAAAAACCCACCAGCCCAACCATGCACCTT CTGCATCATCTTCCATTTCCACACGCCACATGGCTCAATGGGAAGGTGCAAGGCTTGAAGCAGAGGCAAGGCTTTCAAGC CTCAACACCACCAAAACAACTCACCACTGTGACCACTTCCTCCGCATGTGGAACTCTGAAATTGGAGATTCATTTCGCAA CTTTCACAAGCCAGATCATAATCAAAACAAGAACATTAACAGCTTCTGCTTGAGTCCTCTTTCTGCAGGATCATCTTCCA ACAAATGTGACTCAGTTTCTGCTGTTACTACTAATGCTGCTGACCCATTTGGATCCTCAAACAATGCTGTGAAACAAGAG TTGTTGTGTGCTGAAGAAGATGTGGTTCAGCATCATGGGTCTGATTCATCATGCTCTAATGACTTGGAGGACTCATCAGA CACTGCTTTGCAGCTCTTACTAGATTTTCCTATCTACAATGACATGAGCTTCTTAGAAGGAAACTCTTTTGTTTGTCCCC TCTAG
Protein sequence (LotjaGi1g1v0473200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRTPCCDKKGLKKGPWTAEEDEVLTNYIKKNGGHGSWRSLPKMTGLLRCGKSCRLRWTNYLRPDIKRGPFTPEEEKLVI QLHGILGNRWAAIASQLPGRTDNEIKNFWNTHLKKRLKALGLDPKTHQPNHAPSASSSISTRHMAQWEGARLEAEARLSS LNTTKTTHHCDHFLRMWNSEIGDSFRNFHKPDHNQNKNINSFCLSPLSAGSSSNKCDSVSAVTTNAADPFGSSNNAVKQE LLCAEEDVVQHHGSDSSCSNDLEDSSDTALQLLLDFPIYNDMSFLEGNSFVCPL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 225 | 225 | 6.4E-97 | – | |
| PANTHER | 1 | 225 | 225 | 6.4E-97 | ||
| ProSiteProfiles | 9 | 62 | 54 | 15.174 | ||
| Gene3D | 11 | 68 | 58 | 1.7E-17 | – | |
| SUPERFAMILY | 11 | 109 | 99 | 9.9E-29 | ||
| SMART | 13 | 64 | 52 | 2.5E-11 | ||
| Pfam | 14 | 62 | 49 | 3.0E-12 | ||
| CDD | 16 | 62 | 47 | 7.53685E-9 | ||
| ProSiteProfiles | 63 | 117 | 55 | 26.562 | ||
| SMART | 67 | 115 | 49 | 1.6E-17 | ||
| Pfam | 68 | 113 | 46 | 1.5E-15 | ||
| CDD | 70 | 113 | 44 | 2.65537E-13 | ||
| Gene3D | 70 | 117 | 48 | 5.5E-21 | – | |
| MobiDBLite | 123 | 146 | 24 | - | – | |
| MobiDBLite | 129 | 144 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0473200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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