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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0476400 |
| Transcript ID | LotjaGi1g1v0476400.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rop guanine nucleotide exchange factor, putative; TAIR: AT1G01700.2 RHO guanyl-nucleotide exchange factor 2; Swiss-Prot: sp|Q9LQ89|ROGF2_ARATH Rop guanine nucleotide exchange factor 2; TrEMBL-Plants: tr|A0A0L9U3X8|A0A0L9U3X8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0476400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:98744583..98748609) extracted from Lotus japonicus Gifu genome v1.2.
GAAACCCAATAATTTGACAATTTCTGCAACTTGGTCTTTTTTTCTTTAATTGGACAATTATTACTTTATCATTACAGTAG CAGGCTAGCAGCAGTATGAGAAGAAGGCCCATAACTTTATTACCTTTTCTTAGGATTTGTTCAAACACAGTTTTCTTTTT GCATGGAAACTCTTCAAGAGAAGAAGGTAAAGGCACAAATGATTAGGAGGGACATGTTTCAAATGTTATCAAGTTTAAAC TTCAAATTCAAATCCAGCACATAAAAAGGTAACATATATAAGAAAAAGAATGCTGGGGACCCTTGCTTTAATTACAACCG TTTGTTTTTGAAGTTTTAAATTTCAGTTATTTTCCTGGAAAAGTTGCCAAAGATTGCTTCTTCTTTTTTCTTCACACCCC TTTTGCTGCGTTTTCATTGAATTGAAAAGAATCCCAATAGAACAAGCATTGTTTGGGAGCTTTTGAACATTCAAATATTG TTGCTTTTTCTTTTTAATCTCCCTTTTTTCCCTTTTGTTAACTATATGTATTGTTTGATTTGAATGAACATTATGTAGTT TCAGCTGAGTTCTATGTCATTCTTTTATATCCTATAGTATGTCTCAAATTGATCATGATCATTAAGTACTGAAAATTAGA GTTCACAAGTTCAATTTGTGACTCAAACATTCATGTTTATAATTTGCAGGTGCTGAGAATTTTGGTTGATCACAGATTCT AGAGCAAAGATGAAGAAATTATCAAACTTTGATGAAATTTCTGATGTGGGTTATGATCACCCTTCACCTTCTATGGATCA CTCAGCTCCTAATACTCCTGCTTTCTCCCCAATGAGTCGTGATTCTCTTGCATACTGCCGAGCCTGGACAAGCTCAGAGG CATCAAATTCTAACTTCTCAGAGATTGTAGATGACAGCAGCTACTCCAGTGAACCTTCGCCGTGTCGCTGGACGGCGGTT AAAGCTTCGCCGATGAAGCTGCGGAAGCATTCACTGGATGATAAGCTTGATGACAGTGATCTCCTTGATTCAGGTTGGTT TGTCATAGCTTGTTTAGGGAATTTAATTAGATTCCCACGGTCAAAGAATCTCATCTGTTCGATCAAAATCAGACGGCTCA AATTTTAATCGTACTCTGTCGTCTGATCTTTGATAAAATATGAGTCGTCTGATCTTAATTGAACAGCAGATTTCTTGACT GTGTAAATTTAGTATTGTTCTGAACGCAAGGAAACTCAAATCCCTTGTTTAGTCACTTGTGAAATTTTTAGTTACTTTCT TAGTATAGGTACAATTTTCAACAATAACTGAGTAAATTTTGTGGATATCAGATGAGTTTCAAATGATGAAGGAAAGATTT GCAAAGCTTCTGCTTGGGGAAGACATGTCTGGTGGTGGGAAAGGTGTTTGCACTGCAGTTACAATCTCCAATGCCATTAC CAATCTCTATGGTAATTTAATTTTGTTATGTTCTGAAAGATCAATAACAATACTATTTTTCTTCAAGTTAATTGCAATTG AACATGTTTGGATTTTGAACTCTGCAGCAACTGTATTTGGACAAAACTTAAAGTTGGAGCCACTGAAGCCTGAGAAGAAG GCCATGTGGAAAAGGGAAATGAAGGTTCTTCTGTCAGTGTGTGATTACATCCAAGAATTTGCCCCAACTGCACAATATTT AGAAGATGGCACAATTGTGGAGGTGAGCTTTTCTAAATGATAAACTATAAGTTAAATGGAGTTTGTTAATGTATCTACGG TGCGTTTGGTAAACAGCTTAATTAAGGGTTTATGTCATAAGCTAATCTGAGCAGCTTATCAAAATAAGCTCAAAGCAGCT GGCAGTTAGGTCATAAATTATTTACATAAGCACTCAAACACTTGCATAAGCACGTATGCTATAAGATAAGTTCAAATAAG TTCTTCCAAACGGGCCCTAATACGATGACCTGGTCTTTTCTTATAGATGATGAAAAGCAGGCCAAGGTCAGACCTATATA TCAACCTCCCTGCACTGCAAAAGCTTGACACAATGCTCATAGTAAGACAAAAGTGACAAACCTCAATAGCTTCTTCTAGC ATGTAACAGTTTTTCGTCAAGATTTGTCATGGCTAATAAGCATGAGCATTGCTTGCAGGAAATATTGGATACTTTTGAGG ATACTGAATTTTGGTATGCAGAGAACATACCTGGGAACTCAACTCGGTCACCGCGCGCAGCCTCGTTTCGGAAGATTGTT CCGAGGAAAGATGAGAAGTGGTGGCTTCCAGTTCCTTGTGTTCTCCCTGGTGGCCTCTCTGATAAGTCAAGGAAGCACCT TATAGAGAAAAGGGATTGTGCTAATCAAATTCATAAAGCAGCGATGGCAATAAATAGCAATGTTCTTGCAGAAATTGATA TCCCAGAAACATATATAGATGATCTTCCCAAGGTTAGTCCCTATTGCTAAAGATAGTTTCTGGTTCTGAAAATCTCAGTG CTTGTTCGGATACACAATGGAAAACCACCCTGAGCCAAAATCACGCTGGACTGACAAAAGCAACTTGCCTTAACTTTTTT GTGGTTGTCCACCGCGATTTTGACTTCACAGTGTTTTTCGACCGTGTATCCAAAAACACGCACTCAATCGAAAGTTTCAG TTGAAATCTCAGAATGAGTCTGCATTTTGCTTCTTCTTTTTTCCAGCTCACATTCTATTGCCAAGTGATTGAGGATTCCA TTACATGTGATCCCATAAAGCAAATGTCTTGGAATTTCTCATCAAATTTCATAAGCCTTTTATGGAAGCCAATAATTGCA GCTGAGACTTGTAGAAAAAGGGATGATATAACTTCATATAAGGTACTAGTAGCATGCAAATCAAATTTTTTAAATTAATC ATAAATTTATCAAGAGTCACTCAAGACTAATAAATATAATGCAGGAGAAGATTTGTTTTCATGCTACTAGTATTCATCAT TCACATACTTTAATCAAAATGACTAAAATTTTGTGATGCTTCTTTTACTCATTTCAAACATTAATTTCTTCAGAGTGGAA GAGCAAGTCTAGGGGACTCAATTTACCACTACATGAACACTGCAGACAAGTTCTCCCCTGATCACCTTCTTGAGTTTCTA AAGATAAGTTCAGAACATGAAGCACTTGACCTAGTAGACAGGGTCGAATCGTCGATGTACACGTGGAGGCGTAAAGCTTG TCTGAGCCATTCAAAGTCATCATGGAAAAAAGTTAAGGATCTCATGGCTGATACCGACTGCAAGGACAAAAACTACATCT TAGCTGAGAGAGCTGAGACACTGTTGTTTTGCCTGAAGCAAAGATATCCTGAACTCTCACAAACTTCTCTGGACACGACC AAGATCCAATACAACAGGGTACTTTCTAGTAACCTTTAAAAAAATATCATCATGTCCAATATTAAGACATGTTTGTATCA GCTTTTCTTTTCTTAGAATCAATTCTGACACTCGGAAGCTACTCACAAAAACTCCCCCCAGAGTCGATTCTGGCTTTTGA ATAAATTGTAGAAGGATTTTTAAACATTTAGTAGAAATATTTAAATTGGATGTATATGGACTAAGAATGACAATTATCTT TTGCAGGATGTAGGGAAAGCAGTGCTAGAAAGTTATTCAAGAGTTTTAGAAGGCCTAGCATTCAACATTGTTGCTTGGGT TGAAGATGTTCTTGATGTAGATAAATCAATGAGGAATCGAGAAGTCTAAAACCACAATTGAGTTTTTCACGTATATCCAA TCACCGGTGCTTTTTCATCCAACAATATTTTGTAAACCATAGCTTTAGGAGAATGTAGACAGGTAATGGATTGTTGTGTG GTAGATATTCACTTGCTTTGTATGAAGCTTATTTGACAATAGTACAGTTTCAACATTCAGTTGAAGTTTAATTATAACTG CTTCTCCAAAAAAAAAGGTAGAATCAGTATTATTGTCTGAATTTTGAAATATATTTTCATCATCTACTGGACCAGAAGTG TAGAAACTAGAAAGCATGTTGTTTGCC
CDS sequence (LotjaGi1g1v0476400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAAATTATCAAACTTTGATGAAATTTCTGATGTGGGTTATGATCACCCTTCACCTTCTATGGATCACTCAGCTCC TAATACTCCTGCTTTCTCCCCAATGAGTCGTGATTCTCTTGCATACTGCCGAGCCTGGACAAGCTCAGAGGCATCAAATT CTAACTTCTCAGAGATTGTAGATGACAGCAGCTACTCCAGTGAACCTTCGCCGTGTCGCTGGACGGCGGTTAAAGCTTCG CCGATGAAGCTGCGGAAGCATTCACTGGATGATAAGCTTGATGACAGTGATCTCCTTGATTCAGATGAGTTTCAAATGAT GAAGGAAAGATTTGCAAAGCTTCTGCTTGGGGAAGACATGTCTGGTGGTGGGAAAGGTGTTTGCACTGCAGTTACAATCT CCAATGCCATTACCAATCTCTATGCAACTGTATTTGGACAAAACTTAAAGTTGGAGCCACTGAAGCCTGAGAAGAAGGCC ATGTGGAAAAGGGAAATGAAGGTTCTTCTGTCAGTGTGTGATTACATCCAAGAATTTGCCCCAACTGCACAATATTTAGA AGATGGCACAATTGTGGAGATGATGAAAAGCAGGCCAAGGTCAGACCTATATATCAACCTCCCTGCACTGCAAAAGCTTG ACACAATGCTCATAGAAATATTGGATACTTTTGAGGATACTGAATTTTGGTATGCAGAGAACATACCTGGGAACTCAACT CGGTCACCGCGCGCAGCCTCGTTTCGGAAGATTGTTCCGAGGAAAGATGAGAAGTGGTGGCTTCCAGTTCCTTGTGTTCT CCCTGGTGGCCTCTCTGATAAGTCAAGGAAGCACCTTATAGAGAAAAGGGATTGTGCTAATCAAATTCATAAAGCAGCGA TGGCAATAAATAGCAATGTTCTTGCAGAAATTGATATCCCAGAAACATATATAGATGATCTTCCCAAGGTTAGTCCCTAT TGCTAA
Protein sequence (LotjaGi1g1v0476400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKLSNFDEISDVGYDHPSPSMDHSAPNTPAFSPMSRDSLAYCRAWTSSEASNSNFSEIVDDSSYSSEPSPCRWTAVKAS PMKLRKHSLDDKLDDSDLLDSDEFQMMKERFAKLLLGEDMSGGGKGVCTAVTISNAITNLYATVFGQNLKLEPLKPEKKA MWKREMKVLLSVCDYIQEFAPTAQYLEDGTIVEMMKSRPRSDLYINLPALQKLDTMLIEILDTFEDTEFWYAENIPGNST RSPRAASFRKIVPRKDEKWWLPVPCVLPGGLSDKSRKHLIEKRDCANQIHKAAMAINSNVLAEIDIPETYIDDLPKVSPY C
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 32 | 32 | - | – | |
| PANTHER | 1 | 318 | 318 | 4.0E-182 | – | |
| PANTHER | 1 | 318 | 318 | 4.0E-182 | ||
| ProSiteProfiles | 94 | 321 | 228 | 68.095 | ||
| Gene3D | 97 | 320 | 224 | 2.4E-105 | – | |
| Pfam | 103 | 318 | 216 | 5.6E-103 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Rho guanyl-nucleotide exchange factor activity | Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase. |
Expression pattern of LotjaGi1g1v0476400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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