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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0476400 |
| Transcript ID | LotjaGi1g1v0476400.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rop guanine nucleotide exchange factor, putative; TAIR: AT1G01700.1 RHO guanyl-nucleotide exchange factor 2; Swiss-Prot: sp|Q9LQ89|ROGF2_ARATH Rop guanine nucleotide exchange factor 2; TrEMBL-Plants: tr|A0A151TAZ6|A0A151TAZ6_CAJCA Rop guanine nucleotide exchange factor 2; Found in the gene: LotjaGi1g1v0476400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:98744939..98748609) extracted from Lotus japonicus Gifu genome v1.2.
GGAAAAGTTGCCAAAGATTGCTTCTTCTTTTTTCTTCACACCCCTTTTGCTGCGTTTTCATTGAATTGAAAAGAATCCCA ATAGAACAAGCATTGTTTGGGAGCTTTTGAACATTCAAATATTGTTGCTTTTTCTTTTTAATCTCCCTTTTTTCCCTTTT GTTAACTATATGTATTGTTTGATTTGAATGAACATTATGTAGTTTCAGCTGAGTTCTATGTCATTCTTTTATATCCTATA GTATGTCTCAAATTGATCATGATCATTAAGTACTGAAAATTAGAGTTCACAAGTTCAATTTGTGACTCAAACATTCATGT TTATAATTTGCAGGTGCTGAGAATTTTGGTTGATCACAGATTCTAGAGCAAAGATGAAGAAATTATCAAACTTTGATGAA ATTTCTGATGTGGGTTATGATCACCCTTCACCTTCTATGGATCACTCAGCTCCTAATACTCCTGCTTTCTCCCCAATGAG TCGTGATTCTCTTGCATACTGCCGAGCCTGGACAAGCTCAGAGGCATCAAATTCTAACTTCTCAGAGATTGTAGATGACA GCAGCTACTCCAGTGAACCTTCGCCGTGTCGCTGGACGGCGGTTAAAGCTTCGCCGATGAAGCTGCGGAAGCATTCACTG GATGATAAGCTTGATGACAGTGATCTCCTTGATTCAGGTTGGTTTGTCATAGCTTGTTTAGGGAATTTAATTAGATTCCC ACGGTCAAAGAATCTCATCTGTTCGATCAAAATCAGACGGCTCAAATTTTAATCGTACTCTGTCGTCTGATCTTTGATAA AATATGAGTCGTCTGATCTTAATTGAACAGCAGATTTCTTGACTGTGTAAATTTAGTATTGTTCTGAACGCAAGGAAACT CAAATCCCTTGTTTAGTCACTTGTGAAATTTTTAGTTACTTTCTTAGTATAGGTACAATTTTCAACAATAACTGAGTAAA TTTTGTGGATATCAGATGAGTTTCAAATGATGAAGGAAAGATTTGCAAAGCTTCTGCTTGGGGAAGACATGTCTGGTGGT GGGAAAGGTGTTTGCACTGCAGTTACAATCTCCAATGCCATTACCAATCTCTATGGTAATTTAATTTTGTTATGTTCTGA AAGATCAATAACAATACTATTTTTCTTCAAGTTAATTGCAATTGAACATGTTTGGATTTTGAACTCTGCAGCAACTGTAT TTGGACAAAACTTAAAGTTGGAGCCACTGAAGCCTGAGAAGAAGGCCATGTGGAAAAGGGAAATGAAGGTTCTTCTGTCA GTGTGTGATTACATCCAAGAATTTGCCCCAACTGCACAATATTTAGAAGATGGCACAATTGTGGAGGTGAGCTTTTCTAA ATGATAAACTATAAGTTAAATGGAGTTTGTTAATGTATCTACGGTGCGTTTGGTAAACAGCTTAATTAAGGGTTTATGTC ATAAGCTAATCTGAGCAGCTTATCAAAATAAGCTCAAAGCAGCTGGCAGTTAGGTCATAAATTATTTACATAAGCACTCA AACACTTGCATAAGCACGTATGCTATAAGATAAGTTCAAATAAGTTCTTCCAAACGGGCCCTAATACGATGACCTGGTCT TTTCTTATAGATGATGAAAAGCAGGCCAAGGTCAGACCTATATATCAACCTCCCTGCACTGCAAAAGCTTGACACAATGC TCATAGTAAGACAAAAGTGACAAACCTCAATAGCTTCTTCTAGCATGTAACAGTTTTTCGTCAAGATTTGTCATGGCTAA TAAGCATGAGCATTGCTTGCAGGAAATATTGGATACTTTTGAGGATACTGAATTTTGGTATGCAGAGAACATACCTGGGA ACTCAACTCGGTCACCGCGCGCAGCCTCGTTTCGGAAGATTGTTCCGAGGAAAGATGAGAAGTGGTGGCTTCCAGTTCCT TGTGTTCTCCCTGGTGGCCTCTCTGATAAGTCAAGGAAGCACCTTATAGAGAAAAGGGATTGTGCTAATCAAATTCATAA AGCAGCGATGGCAATAAATAGCAATGTTCTTGCAGAAATTGATATCCCAGAAACATATATAGATGATCTTCCCAAGGTTA GTCCCTATTGCTAAAGATAGTTTCTGGTTCTGAAAATCTCAGTGCTTGTTCGGATACACAATGGAAAACCACCCTGAGCC AAAATCACGCTGGACTGACAAAAGCAACTTGCCTTAACTTTTTTGTGGTTGTCCACCGCGATTTTGACTTCACAGTGTTT TTCGACCGTGTATCCAAAAACACGCACTCAATCGAAAGTTTCAGTTGAAATCTCAGAATGAGTCTGCATTTTGCTTCTTC TTTTTTCCAGCTCACATTCTATTGCCAAGTGATTGAGGATTCCATTACATGTGATCCCATAAAGCAAATGTCTTGGAATT TCTCATCAAATTTCATAAGCCTTTTATGGAAGCCAATAATTGCAGCTGAGACTTGTAGAAAAAGGGATGATATAACTTCA TATAAGGTACTAGTAGCATGCAAATCAAATTTTTTAAATTAATCATAAATTTATCAAGAGTCACTCAAGACTAATAAATA TAATGCAGGAGAAGATTTGTTTTCATGCTACTAGTATTCATCATTCACATACTTTAATCAAAATGACTAAAATTTTGTGA TGCTTCTTTTACTCATTTCAAACATTAATTTCTTCAGAGTGGAAGAGCAAGTCTAGGGGACTCAATTTACCACTACATGA ACACTGCAGACAAGTTCTCCCCTGATCACCTTCTTGAGTTTCTAAAGATAAGTTCAGAACATGAAGCACTTGACCTAGTA GACAGGGTCGAATCGTCGATGTACACGTGGAGGCGTAAAGCTTGTCTGAGCCATTCAAAGTCATCATGGAAAAAAGTTAA GGATCTCATGGCTGATACCGACTGCAAGGACAAAAACTACATCTTAGCTGAGAGAGCTGAGACACTGTTGTTTTGCCTGA AGCAAAGATATCCTGAACTCTCACAAACTTCTCTGGACACGACCAAGATCCAATACAACAGGGTACTTTCTAGTAACCTT TAAAAAAATATCATCATGTCCAATATTAAGACATGTTTGTATCAGCTTTTCTTTTCTTAGAATCAATTCTGACACTCGGA AGCTACTCACAAAAACTCCCCCCAGAGTCGATTCTGGCTTTTGAATAAATTGTAGAAGGATTTTTAAACATTTAGTAGAA ATATTTAAATTGGATGTATATGGACTAAGAATGACAATTATCTTTTGCAGGATGTAGGGAAAGCAGTGCTAGAAAGTTAT TCAAGAGTTTTAGAAGGCCTAGCATTCAACATTGTTGCTTGGGTTGAAGATGTTCTTGATGTAGATAAATCAATGAGGAA TCGAGAAGTCTAAAACCACAATTGAGTTTTTCACGTATATCCAATCACCGGTGCTTTTTCATCCAACAATATTTTGTAAA CCATAGCTTTAGGAGAATGTAGACAGGTAATGGATTGTTGTGTGGTAGATATTCACTTGCTTTGTATGAAGCTTATTTGA CAATAGTACAGTTTCAACATTCAGTTGAAGTTTAATTATAACTGCTTCTCCAAAAAAAAAGGTAGAATCAGTATTATTGT CTGAATTTTGAAATATATTTTCATCATCTACTGGACCAGAAGTGTAGAAACTAGAAAGCATGTTGTTTGCC
CDS sequence (LotjaGi1g1v0476400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAAATTATCAAACTTTGATGAAATTTCTGATGTGGGTTATGATCACCCTTCACCTTCTATGGATCACTCAGCTCC TAATACTCCTGCTTTCTCCCCAATGAGTCGTGATTCTCTTGCATACTGCCGAGCCTGGACAAGCTCAGAGGCATCAAATT CTAACTTCTCAGAGATTGTAGATGACAGCAGCTACTCCAGTGAACCTTCGCCGTGTCGCTGGACGGCGGTTAAAGCTTCG CCGATGAAGCTGCGGAAGCATTCACTGGATGATAAGCTTGATGACAGTGATCTCCTTGATTCAGATGAGTTTCAAATGAT GAAGGAAAGATTTGCAAAGCTTCTGCTTGGGGAAGACATGTCTGGTGGTGGGAAAGGTGTTTGCACTGCAGTTACAATCT CCAATGCCATTACCAATCTCTATGCAACTGTATTTGGACAAAACTTAAAGTTGGAGCCACTGAAGCCTGAGAAGAAGGCC ATGTGGAAAAGGGAAATGAAGGTTCTTCTGTCAGTGTGTGATTACATCCAAGAATTTGCCCCAACTGCACAATATTTAGA AGATGGCACAATTGTGGAGATGATGAAAAGCAGGCCAAGGTCAGACCTATATATCAACCTCCCTGCACTGCAAAAGCTTG ACACAATGCTCATAGAAATATTGGATACTTTTGAGGATACTGAATTTTGGTATGCAGAGAACATACCTGGGAACTCAACT CGGTCACCGCGCGCAGCCTCGTTTCGGAAGATTGTTCCGAGGAAAGATGAGAAGTGGTGGCTTCCAGTTCCTTGTGTTCT CCCTGGTGGCCTCTCTGATAAGTCAAGGAAGCACCTTATAGAGAAAAGGGATTGTGCTAATCAAATTCATAAAGCAGCGA TGGCAATAAATAGCAATGTTCTTGCAGAAATTGATATCCCAGAAACATATATAGATGATCTTCCCAAGCTCACATTCTAT TGCCAAGTGATTGAGGATTCCATTACATGTGATCCCATAAAGCAAATGTCTTGGAATTTCTCATCAAATTTCATAAGCCT TTTATGGAAGCCAATAATTGCAGCTGAGACTTGTAGAAAAAGGGATGATATAACTTCATATAAGAGTGGAAGAGCAAGTC TAGGGGACTCAATTTACCACTACATGAACACTGCAGACAAGTTCTCCCCTGATCACCTTCTTGAGTTTCTAAAGATAAGT TCAGAACATGAAGCACTTGACCTAGTAGACAGGGTCGAATCGTCGATGTACACGTGGAGGCGTAAAGCTTGTCTGAGCCA TTCAAAGTCATCATGGAAAAAAGTTAAGGATCTCATGGCTGATACCGACTGCAAGGACAAAAACTACATCTTAGCTGAGA GAGCTGAGACACTGTTGTTTTGCCTGAAGCAAAGATATCCTGAACTCTCACAAACTTCTCTGGACACGACCAAGATCCAA TACAACAGGGATGTAGGGAAAGCAGTGCTAGAAAGTTATTCAAGAGTTTTAGAAGGCCTAGCATTCAACATTGTTGCTTG GGTTGAAGATGTTCTTGATGTAGATAAATCAATGAGGAATCGAGAAGTCTAA
Protein sequence (LotjaGi1g1v0476400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKLSNFDEISDVGYDHPSPSMDHSAPNTPAFSPMSRDSLAYCRAWTSSEASNSNFSEIVDDSSYSSEPSPCRWTAVKAS PMKLRKHSLDDKLDDSDLLDSDEFQMMKERFAKLLLGEDMSGGGKGVCTAVTISNAITNLYATVFGQNLKLEPLKPEKKA MWKREMKVLLSVCDYIQEFAPTAQYLEDGTIVEMMKSRPRSDLYINLPALQKLDTMLIEILDTFEDTEFWYAENIPGNST RSPRAASFRKIVPRKDEKWWLPVPCVLPGGLSDKSRKHLIEKRDCANQIHKAAMAINSNVLAEIDIPETYIDDLPKLTFY CQVIEDSITCDPIKQMSWNFSSNFISLLWKPIIAAETCRKRDDITSYKSGRASLGDSIYHYMNTADKFSPDHLLEFLKIS SEHEALDLVDRVESSMYTWRRKACLSHSKSSWKKVKDLMADTDCKDKNYILAERAETLLFCLKQRYPELSQTSLDTTKIQ YNRDVGKAVLESYSRVLEGLAFNIVAWVEDVLDVDKSMRNREV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 32 | 32 | - | – | |
| PANTHER | 1 | 523 | 523 | 1.5E-284 | – | |
| PANTHER | 1 | 523 | 523 | 1.5E-284 | ||
| ProSiteProfiles | 94 | 523 | 430 | 108.177 | ||
| Gene3D | 97 | 338 | 242 | 5.1E-105 | – | |
| Pfam | 103 | 317 | 215 | 2.3E-102 | ||
| Gene3D | 367 | 482 | 116 | 1.5E-46 | – | |
| Pfam | 368 | 519 | 152 | 4.0E-62 | ||
| Gene3D | 483 | 515 | 33 | 1.5E-46 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Rho guanyl-nucleotide exchange factor activity | Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase. |
Expression pattern of LotjaGi1g1v0476400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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