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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0476400 |
| Transcript ID | LotjaGi1g1v0476400.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rop guanine nucleotide exchange factor, putative; TAIR: AT4G00460.2 RHO guanyl-nucleotide exchange factor 3; Swiss-Prot: sp|A4IJ27|ROGF3_ARATH Rop guanine nucleotide exchange factor 3; TrEMBL-Plants: tr|K7MU94|K7MU94_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0476400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:98745147..98748500) extracted from Lotus japonicus Gifu genome v1.2.
CTGAGTTCTATGTCATTCTTTTATATCCTATAGTATGTCTCAAATTGATCATGATCATTAAGTACTGAAAATTAGAGTTC ACAAGTTCAATTTGTGACTCAAACATTCATGTTTATAATTTGCAGGTGCTGAGAATTTTGGTTGATCACAGATTCTAGAG CAAAGATGAAGAAATTATCAAACTTTGATGAAATTTCTGATGTGGGTTATGATCACCCTTCACCTTCTATGGATCACTCA GCTCCTAATACTCCTGCTTTCTCCCCAATGAGTCGTGATTCTCTTGCATACTGCCGAGCCTGGACAAGCTCAGAGGCATC AAATTCTAACTTCTCAGAGATTGTAGATGACAGCAGCTACTCCAGTGAACCTTCGCCGTGTCGCTGGACGGCGGTTAAAG CTTCGCCGATGAAGCTGCGGAAGCATTCACTGGATGATAAGCTTGATGACAGTGATCTCCTTGATTCAGGTTGGTTTGTC ATAGCTTGTTTAGGGAATTTAATTAGATTCCCACGGTCAAAGAATCTCATCTGTTCGATCAAAATCAGACGGCTCAAATT TTAATCGTACTCTGTCGTCTGATCTTTGATAAAATATGAGTCGTCTGATCTTAATTGAACAGCAGATTTCTTGACTGTGT AAATTTAGTATTGTTCTGAACGCAAGGAAACTCAAATCCCTTGTTTAGTCACTTGTGAAATTTTTAGTTACTTTCTTAGT ATAGGTACAATTTTCAACAATAACTGAGTAAATTTTGTGGATATCAGATGAGTTTCAAATGATGAAGGAAAGATTTGCAA AGCTTCTGCTTGGGGAAGACATGTCTGGTGGTGGGAAAGGTGTTTGCACTGCAGTTACAATCTCCAATGCCATTACCAAT CTCTATGGTAATTTAATTTTGTTATGTTCTGAAAGATCAATAACAATACTATTTTTCTTCAAGTTAATTGCAATTGAACA TGTTTGGATTTTGAACTCTGCAGCAACTGTATTTGGACAAAACTTAAAGTTGGAGCCACTGAAGCCTGAGAAGAAGGCCA TGTGGAAAAGGGAAATGAAGGTTCTTCTGTCAGTGTGTGATTACATCCAAGAATTTGCCCCAACTGCACAATATTTAGAA GATGGCACAATTGTGGAGGTGAGCTTTTCTAAATGATAAACTATAAGTTAAATGGAGTTTGTTAATGTATCTACGGTGCG TTTGGTAAACAGCTTAATTAAGGGTTTATGTCATAAGCTAATCTGAGCAGCTTATCAAAATAAGCTCAAAGCAGCTGGCA GTTAGGTCATAAATTATTTACATAAGCACTCAAACACTTGCATAAGCACGTATGCTATAAGATAAGTTCAAATAAGTTCT TCCAAACGGGCCCTAATACGATGACCTGGTCTTTTCTTATAGATGATGAAAAGCAGGCCAAGGTCAGACCTATATATCAA CCTCCCTGCACTGCAAAAGCTTGACACAATGCTCATAGTAAGACAAAAGTGACAAACCTCAATAGCTTCTTCTAGCATGT AACAGTTTTTCGTCAAGATTTGTCATGGCTAATAAGCATGAGCATTGCTTGCAGGAAATATTGGATACTTTTGAGGATAC TGAATTTTGGTATGCAGAGAACATACCTGGGAACTCAACTCGGTCACCGCGCGCAGCCTCGTTTCGGAAGATTGTTCCGA GGAAAGATGAGAAGTGGTGGCTTCCAGTTCCTTGTGTTCTCCCTGGTGGCCTCTCTGATAAGTCAAGGAAGCACCTTATA GAGAAAAGGGATTGTGCTAATCAAATTCATAAAGCAGCGATGGCAATAAATAGCAATGTTCTTGCAGAAATTGATATCCC AGAAACATATATAGATGATCTTCCCAAGGTTAGTCCCTATTGCTAAAGATAGTTTCTGGTTCTGAAAATCTCAGTGCTTG TTCGGATACACAATGGAAAACCACCCTGAGCCAAAATCACGCTGGACTGACAAAAGCAACTTGCCTTAACTTTTTTGTGG TTGTCCACCGCGATTTTGACTTCACAGTGTTTTTCGACCGTGTATCCAAAAACACGCACTCAATCGAAAGTTTCAGTTGA AATCTCAGAATGAGTCTGCATTTTGCTTCTTCTTTTTTCCAGCTCACATTCTATTGCCAAGTGATTGAGGATTCCATTAC ATGTGATCCCATAAAGCAAATGTCTTGGAATTTCTCATCAAATTTCATAAGCCTTTTATGGAAGCCAATAATTGCAGCTG AGACTTGTAGAAAAAGGGATGATATAACTTCATATAAGGTACTAGTAGCATGCAAATCAAATTTTTTAAATTAATCATAA ATTTATCAAGAGTCACTCAAGACTAATAAATATAATGCAGGAGAAGATTTGTTTTCATGCTACTAGTATTCATCATTCAC ATACTTTAATCAAAATGACTAAAATTTTGTGATGCTTCTTTTACTCATTTCAAACATTAATTTCTTCAGAGTGGAAGAGC AAGTCTAGGGGACTCAATTTACCACTACATGAACACTGCAGACAAGTTCTCCCCTGATCACCTTCTTGAGTTTCTAAAGA TAAGTTCAGAACATGAAGCACTTGACCTAGTAGACAGGGTCGAATCGTCGATGTACACGTGGAGGCGTAAAGCTTGTCTG AGCCATTCAAAGTCATCATGGAAAAAAGTTAAGGATCTCATGGCTGATACCGACTGCAAGGACAAAAACTACATCTTAGC TGAGAGAGCTGAGACACTGTTGTTTTGCCTGAAGCAAAGATATCCTGAACTCTCACAAACTTCTCTGGACACGACCAAGA TCCAATACAACAGGGTACTTTCTAGTAACCTTTAAAAAAATATCATCATGTCCAATATTAAGACATGTTTGTATCAGCTT TTCTTTTCTTAGAATCAATTCTGACACTCGGAAGCTACTCACAAAAACTCCCCCCAGAGTCGATTCTGGCTTTTGAATAA ATTGTAGAAGGATTTTTAAACATTTAGTAGAAATATTTAAATTGGATGTATATGGACTAAGAATGACAATTATCTTTTGC AGGATGTAGGGAAAGCAGTGCTAGAAAGTTATTCAAGAGTTTTAGAAGGCCTAGCATTCAACATTGTTGCTTGGGTTGAA GATGTTCTTGATGTAGATAAATCAATGAGGAATCGAGAAGTCTAAAACCACAATTGAGTTTTTCACGTATATCCAATCAC CGGTGCTTTTTCATCCAACAATATTTTGTAAACCATAGCTTTAGGAGAATGTAGACAGGTAATGGATTGTTGTGTGGTAG ATATTCACTTGCTTTGTATGAAGCTTATTTGACAATAGTACAGTTTCAACATTCAGTTGAAGTTTAATTATAAC
CDS sequence (LotjaGi1g1v0476400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAAATTATCAAACTTTGATGAAATTTCTGATGTGGGTTATGATCACCCTTCACCTTCTATGGATCACTCAGCTCC TAATACTCCTGCTTTCTCCCCAATGAGTCGTGATTCTCTTGCATACTGCCGAGCCTGGACAAGCTCAGAGGCATCAAATT CTAACTTCTCAGAGATTGTAGATGACAGCAGCTACTCCAGTGAACCTTCGCCGTGTCGCTGGACGGCGGTTAAAGCTTCG CCGATGAAGCTGCGGAAGCATTCACTGGATGATAAGCTTGATGACAGTGATCTCCTTGATTCAGATGAGTTTCAAATGAT GAAGGAAAGATTTGCAAAGCTTCTGCTTGGGGAAGACATGTCTGGTGGTGGGAAAGGTGTTTGCACTGCAGTTACAATCT CCAATGCCATTACCAATCTCTATGCAACTGTATTTGGACAAAACTTAAAGTTGGAGCCACTGAAGCCTGAGAAGAAGGCC ATGTGGAAAAGGGAAATGAAGGTTCTTCTGTCAGTGTGTGATTACATCCAAGAATTTGCCCCAACTGCACAATATTTAGA AGATGGCACAATTGTGGAGATGATGAAAAGCAGGCCAAGGTCAGACCTATATATCAACCTCCCTGCACTGCAAAAGCTTG ACACAATGCTCATAGAAATATTGGATACTTTTGAGGATACTGAATTTTGGTATGCAGAGAACATACCTGGGAACTCAACT CGGTCACCGCGCGCAGCCTCGTTTCGGAAGATTGTTCCGAGGAAAGATGAGAAGTGGTGGCTTCCAGTTCCTTGTGTTCT CCCTGGTGGCCTCTCTGATAAGTCAAGGAAGCACCTTATAGAGAAAAGGGATTGTGCTAATCAAATTCATAAAGCAGCGA TGGCAATAAATAGCAATGTTCTTGCAGAAATTGATATCCCAGAAACATATATAGATGATCTTCCCAAGAGTGGAAGAGCA AGTCTAGGGGACTCAATTTACCACTACATGAACACTGCAGACAAGTTCTCCCCTGATCACCTTCTTGAGTTTCTAAAGAT AAGTTCAGAACATGAAGCACTTGACCTAGTAGACAGGGTCGAATCGTCGATGTACACGTGGAGGCGTAAAGCTTGTCTGA GCCATTCAAAGTCATCATGGAAAAAAGTTAAGGATCTCATGGCTGATACCGACTGCAAGGACAAAAACTACATCTTAGCT GAGAGAGCTGAGACACTGTTGTTTTGCCTGAAGCAAAGATATCCTGAACTCTCACAAACTTCTCTGGACACGACCAAGAT CCAATACAACAGGGATGTAGGGAAAGCAGTGCTAGAAAGTTATTCAAGAGTTTTAGAAGGCCTAGCATTCAACATTGTTG CTTGGGTTGAAGATGTTCTTGATGTAGATAAATCAATGAGGAATCGAGAAGTCTAA
Protein sequence (LotjaGi1g1v0476400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKLSNFDEISDVGYDHPSPSMDHSAPNTPAFSPMSRDSLAYCRAWTSSEASNSNFSEIVDDSSYSSEPSPCRWTAVKAS PMKLRKHSLDDKLDDSDLLDSDEFQMMKERFAKLLLGEDMSGGGKGVCTAVTISNAITNLYATVFGQNLKLEPLKPEKKA MWKREMKVLLSVCDYIQEFAPTAQYLEDGTIVEMMKSRPRSDLYINLPALQKLDTMLIEILDTFEDTEFWYAENIPGNST RSPRAASFRKIVPRKDEKWWLPVPCVLPGGLSDKSRKHLIEKRDCANQIHKAAMAINSNVLAEIDIPETYIDDLPKSGRA SLGDSIYHYMNTADKFSPDHLLEFLKISSEHEALDLVDRVESSMYTWRRKACLSHSKSSWKKVKDLMADTDCKDKNYILA ERAETLLFCLKQRYPELSQTSLDTTKIQYNRDVGKAVLESYSRVLEGLAFNIVAWVEDVLDVDKSMRNREV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 32 | 32 | - | – | |
| PANTHER | 1 | 316 | 316 | 1.1E-276 | – | |
| PANTHER | 1 | 316 | 316 | 1.1E-276 | ||
| ProSiteProfiles | 94 | 471 | 378 | 109.555 | ||
| Gene3D | 97 | 343 | 247 | 5.3E-105 | – | |
| Pfam | 103 | 467 | 365 | 1.4E-172 | ||
| PANTHER | 316 | 471 | 156 | 1.1E-276 | – | |
| PANTHER | 316 | 471 | 156 | 1.1E-276 | ||
| Gene3D | 377 | 471 | 95 | 3.5E-17 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Rho guanyl-nucleotide exchange factor activity | Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase. |
Expression pattern of LotjaGi1g1v0476400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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