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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0478400 |
| Transcript ID | LotjaGi1g1v0478400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AT-rich interactive domain protein; TAIR: AT2G46040.1 ARID/BRIGHT AND ELM2 DNA-binding domain-containing protein; Swiss-Prot: sp|Q84JT7|ARID1_ARATH AT-rich interactive domain-containing protein 1; TrEMBL-Plants: tr|K7LG34|K7LG34_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0478400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:99016994..99022681) extracted from Lotus japonicus Gifu genome v1.2.
ACAACATTGGTATTTCTCAAGTTAGGAAAAAAGTTGGTGTCAAAGTAAAAGCTTAGTGAAGTCACCATAAGATCTCATAG AAGCACTTCCTCCTGTACATCTCAATTGACACTGAAAGTGGTATGTCTTCCTTTCTTAATCTTTTCCCCTTCCTCTCCCC CTAACTTCCAATCAAAATTGACTTGTTTTTACTTTCAATGAGATCTGTTTGGTAAGAAAATTAAAAAAATTCCTTTTATT TCCTGAAAACTATTTTTATATTCAGATTTTCAGAAACCCTCTTCAATCAAACCATTCCAAAAAATATTATTTCTCATTTT CAGATTTAGAAAACCCCTCTTTTGATTTTGAAGAATAGGGTCTTCATCTGTTGAAAACTTGAAGTTTGGCCCCTCTTCTC TTGTTACCCCAAATTCATGAGAAAACGCCAATCGTTGATTTTTCTTTCAGACATAGAAACAATTCAATATAAAGCGCGGG ATACCCAAAAGTTTCGCTCTTACTCTCAAATCTAGTACAAGTTTTGAACTAGTGAGAGCAACGAAACACAGAGCTTTCTC ACTCCAAAAGCTACTACCCATGTTTCGCAATCGGTACCCTTTTTCTGGATTCTCACGTTGAATGCTTGCATACCCAGTTC TGCTTTTTCTGTTTTGTCTTTGATTTTCAGTTTTTTGTGTGATTTTTGTTTTGTTTTGCTTTTTTCTGGGAATGATTTTG GTGTATGTTACAGGGTTGTTGATGCATGAAGATGGGTTTGTCATGAACTTTGCTGTAACCCCTTTGAAGAGTTTGAAGAT GAAGGTGGTATAGTGCTGTTGTAGGTTTATCTGGTGAGTTTGGAGGCTGTTTTTGAGCAATTCCTTGGTGGGTTTTTGTT GAAAGAGATCAATCAGTGGGTAGAAAATGTTGGGTAGTGAGCAACCTCTGGATTTGTATAAGCTTTTCATGGTGGTGAAG GAGAAAGGCGGTTATGATGCGGTTTGTAAGAACGGGTTGTGGGATTTGGTGGGGGAAGAATATGGGTTGGGTGTGAAGGT TGGAGCGTCTGTGGAAATGGTTTACAGTAAGCATTTGAGTTCTCTTGAGACATGGCTGAAGAATGTTGCTGATAGTAAGT TCCCTGAGTGTGATTTAGTGAATGATAGAGTTCAATTCGGCAAGCGTTTGATGGAGGTTCAAGCTGGATTCATGTTGGAT GGTGATGATGATGATGAAAAGGTCAAGAGGGTGGTATATGGCTACCTAGATGGGAGGAAGTTGTGGGGTACAAATAGAGT GAAGGGCTTTAATCCAGAGTTGAATGTGGCTGAACTTGAGACGGTGTATGACTATCTAGATGGGAGGAAGTCGTGTGGTG CTAATAGAGCGCAGAGCAAGAATCCTGAGTCTAATGGGGTCAAGAAAGTTCAGAATGGAGGGCTCGTTGATTCTAATATG CAGGACCATTGGGCGAATGAGCCTAGTCTCGGAAACTTCTGCAACCATACAGATGCCATGGAAACACTGAAAGAGTTTGA TGCAGACAAAATATTAATAGTGGATGTATCTGGTATGATAAAAAACATGCCTGGATTATCTGATGGAGGCAAGAGATGCG AGAATGATAGTCACAATGTCGATGTAGTGAAATTGGATCCATCAAGTGTTAATAAAGAGAGCTCTGGTCGTAAGAGGAAG AGAAATTCTAGGTCGGAGATGCTAAGCTGGGTTAGTGGCATTGCAAAGAATCCTTGTGATCCTATAATTGCTTCAGTTCC AGAAAAGTCTAAGTGGAAGTCTTACAGTAATCAAGAAATCTGGAAGCAGGTTTTGTTGTTTCGAGAAGCTGTCATTCTTA AAAAAGGTTCTGAATCAAGCAGTGAACAGCAGGTAACATGAAATTAACTATAAGCTTTTTGATGGTCATGTGCATCATTA ATACAATTTGAACTATAATATAGGGTGTATGTCAATGTTTTGTGCTGAGACCATACATCATGGAAAAGAATCCTTAATAT TTTGGATAAATCTATTTCCTGAATTATCTGATTGAATAGATATCTTCTGTGTTGAATTTATGTTTGTTAATTATTACATA CATTTTCTGATGTAGCATCTTTCACCATTACAGTTATAATTATTGATATTGTACTTATATAATAGAATCATGGGTGACTT GTTTTATGGCTTAATTGAAATTTTGTTCCCTCTAATTTGGACAATGTGTGATTTTAGTCGCTCTAGTTTAAAGTTAAGGA AATTTTCTCCCTATGCCAATTTTAATATACATAAAATCCTTAAATCTTCATTCTATTTTTAGGATTTATAATGAAGTGAA GATATAAAATGATTTTAAAAGTTTACCAAGTTTGAAATTTAGTAAACTTTTGATAAAATTTGAAGGGCATGGTTTAGGTT TTCAAGAGGGGTGCAATGGTTGCATAGGTGGTGGGGGCATGTAGTGTGTTGGAGAGTGTTCAAAAAAGTGTATTGCTAGT ATTTCTCCTGAAGAGATAAATTTTTGGGATTTTTTTTTGGGTCAATTTTAATATTTTGGATAGTGAGTTTTGTGTAGGGA AATGTCTTGTGTTGGGTCTAACACAAGTATCCTCCAATAAAGACAATCTTGTTTGAGCCGGGAACATCCATATTAGGCTC CATGTCAATAGAGGTTTCGGGGACATCAGGAGCTCCTCCTGTTGTGGTCAATCCCTTGATCCTTCTAGAGGTTCATTTTT CTGATGGCGTTTTGACTAGAGCTAAGTGCATTGTTTTGGCTGCGGAATAGGTTGGTGTGACCTTCCTCTGTTCAGATGAG GAGGCCGTTTTGTCGTTTGCTGACCACGTTAAATTCCGTAGAGGATGAGTAAGGGGTTGATTTGGGTGGTGGTGATGGTT TTGTGTGTTTTAAGCTCTTTCTAGATGTTGTTCTTTGTGGTTTTTCTGTTTGGTTTGCTTAGTTTGTTTCTGGGTTTTTG GTTTTTCTTGCCCTTGTTGGTGTTTGGTTGGGTTTTTTTGGGCCGACCTTTTTTTTTGCTGGCTTTCGCTATCCTTCGAG GTGGCCTGTGTATATTGCCTTCTCCCATCAATATATTTTTGCTTTCTAAAAAAAGACTTGCTCTCCCAATGATATTTTTT CCCTGTATAATACCAAACTCAAACCCGTGACCTTGCTTTAGGGAATCAAACATTAATCACTTGAACCAACCACCCATTGG TTGAGGGGGAAATGTCTATATTAGAATTTGGGAGGCCTAACTCTATCCCAAAAGCTAGTTTAGAGGTGAGGATTGTATCC CCATATATAAAGGTTATCTTGGTTATATCTCTAGTCAATGTGGGATTACTAATTCAATGTTTGATCGATTTAGAATTGTG TTAATTGTTTGTAATATCATCTTCCAAATTATTCTGTCTATGGCAGAGGTGTTAAACTAGTTTTGATGAAACGAGAGGTC AATAAACTCACAAGGTGAGAAAAATTGTGAAAGTCCTTGGTCCTTTGTACTACTCGAATGTGTGGCTGATAAAAAAAATT GTGGCTTTTTGGTACAAAAAATATGTAACACGATTATTTACATCTTATAGGCCAAACATTCTCCAAATGTTAGAAGCTTG TCTTATTAAGGGCATGGATAACACAAATGGATTTGTTAAAATTTTGTTGGGACTGTATCACCATCAGAGGTTTTCACTTG TTATTAGTTAATTATGTAGTTATTTTTGAGAGATCTGATATGACTAAATAAGTTTTTATAAAGAGTAGAATAATCTTCAC CCCTGAGCTAGCTTTTGAGGTATAGTTAGGTCTAGCTTGAATTTTTAGAGGGTATCAAAGCTTATCCTATATCTGTTTTT TGTGCCACTCATAAATGAATCACTCGTAGATGTCCAACCTTGGGTGCGAAATAGTGTTTTGAGAGATTTCACAATGACTA GAGATGTGATCAAATAAGTCCTTATAAATAATTGTGATCGTTGAGCTAGATTTTGTAGAATTAGATCTGATCCGAATTCA AAGATTTACCATTTATAAGTAAGTTCTGGATAGAAGTAATTGTTTCTTTTTGGATGATAAAAGGTCATAAACTCATAATC AATGCTGGTCCTTGAGTGCTTTGATTATTTGTCTAAATGTTGCCACTTGCTTTTTTTGAAACAAATAGAAAATATTCTTT TGGCATCACATTAAAACCCAAATCTTCTTCCATTTTGTAGGGTCCAAGGATGCATCCATCCATGTATGATGATAACTTTG GGGCAAATTACAATCTTAGGCAGAGGTTTCAATGTAACAAGAGCCCTTTATCTGGAAAATCTACATCAAATGGAGCCTCT TCATCTGGGCGAACAGGAAGAAGTTTAGAGAGAAACCCTGGTAAAAAGTCACATAACTCTGTGCTCTCACATCTGGACAT TCCTCTAGGGCCAGACCATCAAGCTGAAATGCCTGAATGGTCTGACATGAGCTATGAGAGTGATTCCAAGTGGTTGGGGA CCAAAATATGGCCAACAAAAGCTGTGAATTTCAATCTTCTTGAAAGGGACCCTATCGGAAAGGGAAGACAAGATTCATGT GGTTGCCAAGTACAAGGTTCTGTCGAGTGTGTCCGATTTCACATTGCTGAAAAAAGAGCTAAAGTGAAGATGGAATTGGG TGTGGCTTTTTATCGGTGGGAGTTACACAAGGTAGGTGAAGAAGTTAGTCATTCGTGGACAAAGCAAGAAGAGAAGAAAT TCAAAGATGTGGTAAAAGCAAACCCGCCTTCATCGGATAGATGTTTCTGGGATCATATTTTTAAAGCATTCCCTATGAAG AGCAGGGAAGATTTAATCAGCTACTACTTCAACGTCTTCCTCTTGCAGCGCGTAGGACACCGAAGTCGGCACACTCCAGA GGACATTAAGAGTGATGATGACGAATCAGAATTTGGACCATTGAGGAATGTTTTTGGACGTCCGACCCATACCTTATTAC CCCCTAAGAAATCACAGACAAAGGGGAGATAGCATGTGAATGTGAGTCGAATCATGAGCTTCATTGAGAATGTAAATTGA TAACTTTTCTTCACTACAGCAAAATTTCAAGTATTCCTTTGCTTAGGATATCAAATCGTCATTGCTTTTGAGGAGTAGCA GTTTGCTTTGGTGTAGGATCAATTTATGAGAGATGAAAAATATTGTCTTTGGGGGTGGAAGCTGCCAACTATGACAGCAT AGAAGTTGGGGTTGCTTTTAGTTTACAAGCTTCCAATTTTGAGACATACCTTCTGTTTGTTCACAGTGATATATTGCAGC TGCAGGTACTCTTAAATGCACATATTTTCACCAGGTTTTGACCACAGGGGTACATACAACTTACAAAAACAGCATCAGGA AATATAGACCAACATTTTAAGAGGATCATCAAACAAGTACAGTGTAGTTGAGTTTTGATTTCAGCCTTTCATCTGATGCG AGTTTCTATGTGAATGTTTTTTGTTTCCATTGCAATACATTGTTTTCGACTCAGTATTTGCAAGTTTGTCTATTTCCTTT TCTAACTCTGAAGTAATTCTATGGTTGAATCATTGAACCTTGAACAAGTACTTCAATCGGTTTAATGACCGTTTCAATTT TAAAAATGTTGATGTTTATAACTTACTTATGCTTCAAGTAATATGTAATTAAATGTTGTTTAGATTCAAGGTGACCCCTA ATGTGCAC
CDS sequence (LotjaGi1g1v0478400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGGTAGTGAGCAACCTCTGGATTTGTATAAGCTTTTCATGGTGGTGAAGGAGAAAGGCGGTTATGATGCGGTTTG TAAGAACGGGTTGTGGGATTTGGTGGGGGAAGAATATGGGTTGGGTGTGAAGGTTGGAGCGTCTGTGGAAATGGTTTACA GTAAGCATTTGAGTTCTCTTGAGACATGGCTGAAGAATGTTGCTGATAGTAAGTTCCCTGAGTGTGATTTAGTGAATGAT AGAGTTCAATTCGGCAAGCGTTTGATGGAGGTTCAAGCTGGATTCATGTTGGATGGTGATGATGATGATGAAAAGGTCAA GAGGGTGGTATATGGCTACCTAGATGGGAGGAAGTTGTGGGGTACAAATAGAGTGAAGGGCTTTAATCCAGAGTTGAATG TGGCTGAACTTGAGACGGTGTATGACTATCTAGATGGGAGGAAGTCGTGTGGTGCTAATAGAGCGCAGAGCAAGAATCCT GAGTCTAATGGGGTCAAGAAAGTTCAGAATGGAGGGCTCGTTGATTCTAATATGCAGGACCATTGGGCGAATGAGCCTAG TCTCGGAAACTTCTGCAACCATACAGATGCCATGGAAACACTGAAAGAGTTTGATGCAGACAAAATATTAATAGTGGATG TATCTGGTATGATAAAAAACATGCCTGGATTATCTGATGGAGGCAAGAGATGCGAGAATGATAGTCACAATGTCGATGTA GTGAAATTGGATCCATCAAGTGTTAATAAAGAGAGCTCTGGTCGTAAGAGGAAGAGAAATTCTAGGTCGGAGATGCTAAG CTGGGTTAGTGGCATTGCAAAGAATCCTTGTGATCCTATAATTGCTTCAGTTCCAGAAAAGTCTAAGTGGAAGTCTTACA GTAATCAAGAAATCTGGAAGCAGGTTTTGTTGTTTCGAGAAGCTGTCATTCTTAAAAAAGGTTCTGAATCAAGCAGTGAA CAGCAGGGTCCAAGGATGCATCCATCCATGTATGATGATAACTTTGGGGCAAATTACAATCTTAGGCAGAGGTTTCAATG TAACAAGAGCCCTTTATCTGGAAAATCTACATCAAATGGAGCCTCTTCATCTGGGCGAACAGGAAGAAGTTTAGAGAGAA ACCCTGGTAAAAAGTCACATAACTCTGTGCTCTCACATCTGGACATTCCTCTAGGGCCAGACCATCAAGCTGAAATGCCT GAATGGTCTGACATGAGCTATGAGAGTGATTCCAAGTGGTTGGGGACCAAAATATGGCCAACAAAAGCTGTGAATTTCAA TCTTCTTGAAAGGGACCCTATCGGAAAGGGAAGACAAGATTCATGTGGTTGCCAAGTACAAGGTTCTGTCGAGTGTGTCC GATTTCACATTGCTGAAAAAAGAGCTAAAGTGAAGATGGAATTGGGTGTGGCTTTTTATCGGTGGGAGTTACACAAGGTA GGTGAAGAAGTTAGTCATTCGTGGACAAAGCAAGAAGAGAAGAAATTCAAAGATGTGGTAAAAGCAAACCCGCCTTCATC GGATAGATGTTTCTGGGATCATATTTTTAAAGCATTCCCTATGAAGAGCAGGGAAGATTTAATCAGCTACTACTTCAACG TCTTCCTCTTGCAGCGCGTAGGACACCGAAGTCGGCACACTCCAGAGGACATTAAGAGTGATGATGACGAATCAGAATTT GGACCATTGAGGAATGTTTTTGGACGTCCGACCCATACCTTATTACCCCCTAAGAAATCACAGACAAAGGGGAGATAG
Protein sequence (LotjaGi1g1v0478400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGSEQPLDLYKLFMVVKEKGGYDAVCKNGLWDLVGEEYGLGVKVGASVEMVYSKHLSSLETWLKNVADSKFPECDLVND RVQFGKRLMEVQAGFMLDGDDDDEKVKRVVYGYLDGRKLWGTNRVKGFNPELNVAELETVYDYLDGRKSCGANRAQSKNP ESNGVKKVQNGGLVDSNMQDHWANEPSLGNFCNHTDAMETLKEFDADKILIVDVSGMIKNMPGLSDGGKRCENDSHNVDV VKLDPSSVNKESSGRKRKRNSRSEMLSWVSGIAKNPCDPIIASVPEKSKWKSYSNQEIWKQVLLFREAVILKKGSESSSE QQGPRMHPSMYDDNFGANYNLRQRFQCNKSPLSGKSTSNGASSSGRTGRSLERNPGKKSHNSVLSHLDIPLGPDHQAEMP EWSDMSYESDSKWLGTKIWPTKAVNFNLLERDPIGKGRQDSCGCQVQGSVECVRFHIAEKRAKVKMELGVAFYRWELHKV GEEVSHSWTKQEEKKFKDVVKANPPSSDRCFWDHIFKAFPMKSREDLISYYFNVFLLQRVGHRSRHTPEDIKSDDDESEF GPLRNVFGRPTHTLLPPKKSQTKGR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 583 | 583 | 1.5E-196 | – | |
| ProSiteProfiles | 1 | 65 | 65 | 16.745 | ||
| PANTHER | 1 | 583 | 583 | 1.5E-196 | – | |
| Gene3D | 2 | 76 | 75 | 2.6E-11 | ||
| SMART | 2 | 66 | 65 | 2.9E-4 | ||
| Pfam | 5 | 60 | 56 | 5.0E-7 | ||
| SUPERFAMILY | 5 | 73 | 69 | 1.23E-14 | ||
| CDD | 6 | 61 | 56 | 7.87232E-13 | – | |
| MobiDBLite | 152 | 171 | 20 | - | – | |
| MobiDBLite | 243 | 264 | 22 | - | – | |
| MobiDBLite | 249 | 263 | 15 | - | – | |
| MobiDBLite | 314 | 333 | 20 | - | – | |
| MobiDBLite | 348 | 370 | 23 | - | – | |
| MobiDBLite | 348 | 395 | 48 | - | – | |
| SMART | 389 | 439 | 51 | 0.0079 | ||
| SMART | 484 | 537 | 54 | 0.0043 | ||
| CDD | 487 | 535 | 49 | 2.4266E-5 | ||
| Pfam | 487 | 534 | 48 | 2.9E-6 | ||
| MobiDBLite | 546 | 562 | 17 | - | – | |
| MobiDBLite | 546 | 585 | 40 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0478400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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