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LotjaGi1g1v0481800.1

Overview

Field Value
Gene ID LotjaGi1g1v0481800
Transcript ID LotjaGi1g1v0481800.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Late embryogenesis abundant protein Lea14; TAIR: AT1G01470.1 Late embryogenesis abundant protein; Swiss-Prot: sp|P46519|LEA14_SOYBN Desiccation protectant protein Lea14 homolog; TrEMBL-Plants: tr|I3STX2|I3STX2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0481800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:99518005..99522464) extracted from Lotus japonicus Gifu genome v1.2.

AATTAAATGTGATATATTAATGCCATTAACTAAGAATAATTTTGAATCACAAATACAAATTGCCAACTGAACCAATGCCA ATGGAACGTACACTTGCAACTTGTAAACGAAGAGCCACTAGAAAATCTTTTTGTGGTTATTTTGGCTCCCTTAAATTGAG GGAAAAGTCAAAAGGTATTGTTTGACCTTTATTACAAGGATCAGCACGTTTAGCTTCATAATTCATTCACATTCTATCTT CATTTTCAAGTTTAACTTTCTCTTCTCTACTCATCAACGTTCATCAACAATAATGGAGGTCAGTTTTCTCAGCAAACTAT AATCATCTTTTTTTCATTAGTTTCTTCTACCTAGCTTATTCTTCTTCCATACATATTTCTCTGCTTTCAATCATTCATTC TCCAAATATTAATTCCGTTGCTAGTTCTTAATCTTTTATACCGGCCTCATCTCTAGCCCAATAGAAGCGGATTATAGCCC TAAGCTAATCTCACATGAAAAATGTCATTCAATCTTGAAATTGTCATTCTAATAACATGTTTAATTAGATTCGTGTTTAA TAATGTTAGAGTCACATCTTTCCTCACAAACGCTAAGTCTAATTTTTGATAGAATCACTTCTCCAAACTTATCAAATTTT CAAGCAAACATTAATATGATTTCCCAGATCCAAAACACAAAGTTAATCGGCATATCAAGTTTAAGAGAAATTTCTTAATG ATAAGAAAACATTACATAATTAGGATTTTGCCTCGGATGGAAATTTTTTTGTATTTAATTTTTATATTTGACCAATTAAA TTGCGCTGTGGAGGTATATATGAATAGTAGTAGTTTTAATTCAAATAACATAACACAACTCGATAGCTGAGTCGGCAAGG AATCATATATCAAATGGAGGCCTGATTGCCTCTAATCATCACTTAGGAATTATTTGGTATAGAGAAAAGAAAAGTGAGTA GACAATGAAATGATTTTTGAATTGTTTCGTTGACAAAAAAATTGAAAAGAAAAGTAAGAGATTGAAAAGAAAAGTAAGAG AAAAGAAAAAAAGAATGTATGTAAATGACACAAATATCTTTAATTAAAAATTAAATATGTTAATTAGATTTCTATCAAAA CAAACTATAATTTTAGAAATATTATAAAATAGTTATCATTATGTATTTTAAATACATTTTTATTTTATTTTTTTAAATCA CACAAAATACTCATCTCCTCACATGTTCTCTTCACATCACGGGAGAAAATACCCCACCATACATTTTCTCTTCTCTCCAT GTTTTCTATTGTATCAAAGAAGAGAAAAAAGCATCGAATTTTTTTTTTTTCAATTACATTTTCTTTTCTCTTTTCTTTAT CTCATGCACAAGCCCTTGTAGTCCACAATCAGTCTCACAAGTTGTTTACGGTAATTACAAATGAAATAATTAATATGTTC AGATGAACTTTTCTTTTACCACAATCAATTCTAAAATTCATAAACTACTTACAAACAATTTCCCCATAATTGATTCTAAT TTACCAATCATCAATTTTTCAAACATCTAATGTTCCTTCAACAATAATTTATAAACCACCAAATAGTATAAACACCTTAG AACACCTTTCACCTATTAGTCTCTCTCATCCCTTCATATATCCTCTAATTAATATTCTACACCACCTGAGTATACACTAT TCTTTATTCATATTCCTTCTTTCCTAAGCTAATAAATTATTTTTTTTCCCCGACATATACTTCTCAATGAAATAAAGAAT AGTAATAGAAGAATAGAGAATCATATGTCAAACTCACTGGGACGGTGCTTCATCTACACGTCACCAAACCGAAGAAAACG ACACCGACAGCGACCATAATGATGAGTGTCTTATTATCATTTATCATCATCGGATCTAATCTCATCTCATTCTCCGAACC AAAACGACACCAGACCAGACAATTCTCCGAACGCGGAGGCGGCGCCACGTGTCATTCACGTGTCCTCACCGCTTTCCCTG CGCGTGCGCGTCTTTTCGATTTCCTGATTTCTAACTATAAATAAATATGAGACTGGGTTTGGTGTCATTAAGCGTTATCA GTGGAGTGAGTCTGATATTTGCAGTGTTGAAAATGTCGCAGTTGTTGGATAAAGCCAAAGCCTTTGTTGCTGAGAAAGTG GCCAACATGCCTATGCCTGAGGCCAGTGTTACAGACGTTGACTTCAAGAAGGTGAGTCGCGAGTGTGTTGAGTACCTGGC TAAGATCTCTGTTTCCAACCCTTATTCAACACCGATTCCTATCTGTGAGATCAACTACACCCTCAAAAGTGCTGGCAGGT TGCTTCCTTTTCTCGATCTCTTCTTTCTTCTTGTTATTTTTAACGTTGATCATCTATTTATATGTGTTGGTTTTGATTTC AGATTCTTGTGTTTGATTTTGATATATTGTTTTGGTGAATTGTCTCGATGATCATGCATTGCTGATTGATTGGGTTCATT TTTTAATTGCAATTTGCAACTCATGGATCATGGATTATAGTTGTTGGGTTAACTATGCAGGATCTGTTTTTACTAATTTG TTTATTTGGTTGTTTTTTTTTCTTCTTCTTTGACGGTGCACCTATCAGTGCCGATGGCAAGACTAATTTAGTTCAAAGAC CAATGATTCATAAACCAACCATCAAATAGTGCACACATTTTGGAATAGTTTTTTTTTTCCTCTATATCTCATTCTTCTTA TTACATCACATCATATATCACATTTATTATTTATCTCTTCACTCTTCCTATATTTCTCTAATGGTCTATACCGTTTGAGA TAAGTGATAAGAAGATAAAAAGAGATAAGTGATAAATGTGATATATGATGTGATGTGATAAGAAAAAAAAAATTAGAAAA AAAAAAGTGTTCTGATGTATGCACTATTTGGTCTGGTGGTCTATGAATCAATGTTGTAGTTGGAAATAGTGTAACATTTA CTCTTAACTAGTGTTAGAAGAATTGAACCAAATTGATTGGCCCGACCAGGAGTCAAGATCCTGATTGGTTCAATTCACTC TCTCGTAACCGATATGGCAAATAATTTATCATAATCGGTCCAAAATCAGTAAAACCAATTAGAACCGAATAAAAATCGAT ATAAATGGGTTCAGTCATTTTCTTGTACTTTTCCGAGTTTCATTTATGCACACACATTCCTAAAATAAAAGGTTAAAAAT TTATGTATTGAAGATTAAAAATTTGATTTCTTTTACTATTGAAGGTTAAAAAGTTATATATCCTGTGTTATTTTCATCGT ATGTAATTATAAATGTATTTTTAAAAAATATTATTCGATCAATTATCGTTTTGGTTTAATTACGGTTAAATCTTTGATAC TTGATATTACCCAAAATATCATTGAATCTTGAATCAGTGTCTCAAGTGTTTGATAATCAAGTTCGAGTTCCATGAACACT CTATATCTTAATTTATTACTTTCGTGGGATTTGAATTTGTTAGCTTGCCTACTCCTTAACAAAACCTTGTTGGTGATTTG GTTATCTTTACTCATGTCTTAAAGAATTTCAATTTCAATAAATAATACTTTTGAATTTGATTTTCATATGCCTAATCATA TTTTTTGTTTGGACCTGGTAATTAATCAGGGAGATAGCATCAGGCACCATACCAGACCCAGGTTCACTGAAGGCAAGTGA CACAACACTGCTGGAAGTGCCGGTGAAGGTAGCTCACAGCATATTGCTGAGCATAGCAAAGGACATTGGTGCTGATTGGG ACATAGACTATCATTTGGATATTGGTCTTGTCATTGACCTCCCAGTCATTGGCAACTTCACCATTCCTCTTTCTCAGAAG GGAGAGATCAAGCTCCCAACCATCACTGACATGTTTGCCTAGCTAGCTCAACCACCACAACATGGGCTTAATTAGAGAAC AATAAAACAGATACACCCTGCATCTCATTTTCAGCTTTGTATCTTGAGTCACTAGCTATTTATTTTTCCCTTTGATTGTA CTTTGTTTGCCCTACACAAAAAGTTATATAGTACTAAATACATACTTCACAATAATACTAGTGTTTTTATCCGTGCGCTG CACGGCGAAAGATTTTTCTAAATTTTTTACGTTAATTTATTTTATATGAAATTGAACCGATTAACTGCTACAAAACCATA GATAACAATTGAAATTAAATTTGATTTGTTTGCACAACAATGAAATCCCAATTTAATCTAACAATGGGGGGAGGTTACAT AAATTTATAGAAGCACTAAAAAGAAAAATAGGATCCTTATGCATTCCACTTGTTGCTCGTTGACCCATCCTCATTCTTAG TTTATTGAATCTGCAAACAATTGGAAAATAGTTTAAATAAGACATTCAAATATACATCTCTCTACTTACAATGTGCATGA TACAAAGAAGTATGAAATCAAAGAAAAAACCAAATCAAGAAACACCACATAAAAATATTG 

CDS sequence (LotjaGi1g1v0481800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGTTGTTGGATAAAGCCAAAGCCTTTGTTGCTGAGAAAGTGGCCAACATGCCTATGCCTGAGGCCAGTGTTACAGA CGTTGACTTCAAGAAGGTGAGTCGCGAGTGTGTTGAGTACCTGGCTAAGATCTCTGTTTCCAACCCTTATTCAACACCGA TTCCTATCTGTGAGATCAACTACACCCTCAAAAGTGCTGGCAGGGAGATAGCATCAGGCACCATACCAGACCCAGGTTCA CTGAAGGCAAGTGACACAACACTGCTGGAAGTGCCGGTGAAGGTAGCTCACAGCATATTGCTGAGCATAGCAAAGGACAT TGGTGCTGATTGGGACATAGACTATCATTTGGATATTGGTCTTGTCATTGACCTCCCAGTCATTGGCAACTTCACCATTC CTCTTTCTCAGAAGGGAGAGATCAAGCTCCCAACCATCACTGACATGTTTGCCTAG 

Protein sequence (LotjaGi1g1v0481800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MELLDKAKAFVAEKVANMPMPEASVTDVDFKKVSRECVEYLAKISVSNPYSTPIPICEINYTLKSAGREIASGTIPDPGS LKASDTTLLEVPVKVAHSILLSIAKDIGADWDIDYHLDIGLVIDLPVIGNFTIPLSQKGEIKLPTITDMFA 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D 1 150 150 2.5E-61
PANTHER 2 151 150 1.6E-82
PANTHER 2 151 150 1.6E-82
SUPERFAMILY 3 149 147 1.44E-50
SMART 23 140 118 1.1E-39
Pfam 43 139 97 7.3E-18

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Response to desiccation Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a desiccation stimulus, extreme dryness resulting from the prolonged deprivation of water.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0481800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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