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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0484600 |
| Transcript ID | LotjaGi1g1v0484600.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G23330.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330; TrEMBL-Plants: tr|K7MUG7|K7MUG7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0484600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:99808003..99811326) extracted from Lotus japonicus Gifu genome v1.2.
AGGTTTCACTTCATTAAAACAAAATATTTAGCTGTCACTTTAAGGTGGTTCCGCAAATATTATGCTGAAACTTTATATAA GCTAAGGTTGGGTGATAACACTCATTTTTATGGATTATCGTGGTCTTGGATCTTCTTGTCGGAAATACGCCAAGCTTATT TCTGCGACCAATTGTCACATTGCTAACTCTTCATTTCACTTCCGTTTGCGCCATCCATGTTCCTCACATCATTCCACCTT ATCCTATGTGTCATCACCACCACCACTAGGTGCTCTTCATGCCCAGTATTTGAAGAATGGTTCTCTTCAAACTTTGAACT CAGCTAACTATATCTTGAATCTCTACGTTAAATCCAGCAACTTAGACCATGCCCACAAGCTGTTTGATGAAATTCCCCAC AGAGACACTCAGACATGGACCGTCCTCATATCAGGTTTTGCTAGAGCTGGCTCTTCAGAGATGGTCTTTAGTCTTTTCAG AGAAATGCAGGCAAAGGGTGCTTGTCCAAATCAGTATACATTGTCTAGTGTCTTCAAGTGCTGCTCAGCTGAAAAGAATC TTCAATTGGGTAAGGGAGTCCATGCCTGGATGCTCAGAAATGGGGTTGATGCAGATGTTGTGCTGGTGAACTCTATCCTT GATCTTTACTTGAAATGCAAGGCTTTTGAATACGCAGAAAGGTTGTTTGAGTTGACCGGTGAGGGAGATGTCGTGACGTG GAATATAATGATTCGTGCATATCTCGGTGCAGGAGATGTGGAGAAGTCTCTTGACATGTTCAGGAACTTGCCTAGCAAGG ATGTTGTGAGTTGGAATACAATCATCGACGGGCTGATACGATGCGGTTATGAAAGACGTGCGCTAGAACTACTGTTCTGT ATGGTGGAAAATGGGACTGAGTTCTCTGAAGTCACGTTCTCCATAGCTCTCATTTTGGCTTCTTCTTTATCACTGGTGGA GCTTGGGAAACAACTTCATGGGCGGGTCATAACATTGGCCTTGAATGGTGACAACTTTATAAATAGCTCACTTGTAGAAA TGTATTGCAAGTGTGGGAGAACGGATAAGGCATCTGTAATTCTGAAAGATGTACCTCTGAATTTGTTGAGAACAGGGAAT TCTGGAGGAATAGTTCCATGGAATTCCATGGTTTCTGGTTATGTTTGGAATGGAAAGTATGAAGACTGTTTGAAAACTTT CAGGTCAATGGTTCATGAACTGGCTATAGTGGATATTCGAACTGTTACAACCGTTATATCTGCTTGTGCTAATGCTGGAC TTTTGGAATTCGGCAGGCAGATGCATGCCTACATTCAGAAAATTGGACATAGAATAGATGCTTATGTTGGTTCCTCCTTA ATTCATATGTATTCTAAATCCGGTAGCTTGGATGATGCCTGGGTGATTTTCAGACAAATCAATGAACCAAATGTTTTCTT GTGGACTTCAATGATATCTGGCTGCGCGCTACATGGTAAAGGAAAGCAGGCAAGTAGTCTTTTTGAAGGAATGTTGAATC AGGGTATTGTACCGAATGAGGTTACTTTTTTAGGGGTTATAAATGCATGCAGCCATGTAGGGCTGCTTGAAGAAGGCTCC ACATATTTTAGGATGATGAAAGATGTTTATTGCATCAATCCCGGAGTTGAACACTGCACTTCTATGGTTGATCTTTATGG TCGAGCAGGTTGCTTAATTGAGACAAAAAACTTTATCTTTGAGAATGGCATCTCTCACTTGACCTCTGTATGGAAATCAT TTTTATCATCTTGTCGACTGCATAAAAACATTGAGATGGGAAAGTGGGTTTCTGAAATGTTGCTTCAAGTTGCACCATCT GATCCAGAAGCCTATATTTTGCTATCAAATATGTGCACTTCTAATCATAGATGGGACGAGGCTGCCATGGTAAGGAGTTT GATGCATCAAAGAGGTGTGAAGAAGCAGCCTGGCCAATCTTGGATTCAGTTAAAGGATCAAACCCACACGTTTGTCATGG GAGATAGGTCTCACCAACAAGACAAGGAGATATATTCATATCTGGACACTTTAGTAGGAAGGTTGAAGGAGATTGGATAT TCCAGTGATGTGAATCCGGTCACGCAGGATGTAGAAGATGAACAAGGGGAAGTACTTATTAGTCATCACAGTGAAAAACT TGCGCTTGTCTTTGGTATCATTAACACTGCCAATAGGACACCAATCCGAATCATGAAAAACCTCCGCATTTGTACCGATT GCCATAACTTCATCAAGTACGCTTCTCAGCTTCTGGAACGTGATATAATTGTGAGAGATTCTCATAGGTTCCATCATTTT AAGTATGGTAGTTGCTCTTGTGGAGATTATTGGTGACAAAAGGTAAAGCATATGATTACCTAGTCTAGAATATAGCCTTG ATGTTCTGAAACCACTCATCATAACTTGATGGTGTGGCATGTAAATCTCAACATCAGCCATCTAAACCTTATGTTAGCAA TGGAGCAAGAATGATAGCGGTAATCTTCTAAATTGTTGGTTCCAGGTTGCTTTAAATCTATGGTTCTGATTTTTTATATT TTCAATTTTTATTATAAGAAAAAAATCCACCAAGTTTATTCTAAATCTGTGGTTCCAGGTTACTTCATCAAGTATCGCCT AAACTTAATGGAGCAAGAATGATAGCATTGGAGTGACATCAATTACCAAAGGTATTATTGATATATATTTCAAATGCATA TGCCAACCCAATGAATTTATTAAAAGTTTTGTTTGGTAAATAAAGCAAGTTTTTTAATTAATAGTTGTTTCTTGGCTTCA GCTAAAAGTTGTTTGCCTATCCCTACTTTGTTGAAAGTTAAAACCATTAGATTTGCCTATCCTGTCTTATGTTTGTAAAC TTTGACCCAGAACCCACCTAACCTTATTGAATCTTGATGCTCAAGGGTTTGTACACCAAGGGAGCTCTGGCTCAAGTTTT GTCATCTATCATCTATGTTCTGGCTTTGCAGCTTCTATTAGCCTGTTGAAAGCCAATATAGCACTTCAATCTTCCCTTGC ACTGCTCTCATATTCACTGTAATTAATCAGGCATAGCACAATGAGTTTTTTATTTTTCCAAAAATGATGGTAATTTAGAC TGGATTTGCTCCAGTGCTGTTTGTCTTAACAGTTAACAATGTCTGATGTATTAATAATGTACACCATCTAGTTTTATCAA GAGAAAATCTTACAAGAGTCTTTGTCCAAAAGAATGTGTAATATCAGACATAACTGATTGAAATATTCTTATCTGCTAAT CTGAAAGCATGAAGATTATATCGAAAAGGACAACTTGATCTTGT
CDS sequence (LotjaGi1g1v0484600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTATCGTGGTCTTGGATCTTCTTGTCGGAAATACGCCAAGCTTATTTCTGCGACCAATTGTCACATTGCTAACTC TTCATTTCACTTCCGTTTGCGCCATCCATGTTCCTCACATCATTCCACCTTATCCTATGTGTCATCACCACCACCACTAG GTGCTCTTCATGCCCAGTATTTGAAGAATGGTTCTCTTCAAACTTTGAACTCAGCTAACTATATCTTGAATCTCTACGTT AAATCCAGCAACTTAGACCATGCCCACAAGCTGTTTGATGAAATTCCCCACAGAGACACTCAGACATGGACCGTCCTCAT ATCAGGTTTTGCTAGAGCTGGCTCTTCAGAGATGGTCTTTAGTCTTTTCAGAGAAATGCAGGCAAAGGGTGCTTGTCCAA ATCAGTATACATTGTCTAGTGTCTTCAAGTGCTGCTCAGCTGAAAAGAATCTTCAATTGGGTAAGGGAGTCCATGCCTGG ATGCTCAGAAATGGGGTTGATGCAGATGTTGTGCTGGTGAACTCTATCCTTGATCTTTACTTGAAATGCAAGGCTTTTGA ATACGCAGAAAGGTTGTTTGAGTTGACCGGTGAGGGAGATGTCGTGACGTGGAATATAATGATTCGTGCATATCTCGGTG CAGGAGATGTGGAGAAGTCTCTTGACATGTTCAGGAACTTGCCTAGCAAGGATGTTGTGAGTTGGAATACAATCATCGAC GGGCTGATACGATGCGGTTATGAAAGACGTGCGCTAGAACTACTGTTCTGTATGGTGGAAAATGGGACTGAGTTCTCTGA AGTCACGTTCTCCATAGCTCTCATTTTGGCTTCTTCTTTATCACTGGTGGAGCTTGGGAAACAACTTCATGGGCGGGTCA TAACATTGGCCTTGAATGGTGACAACTTTATAAATAGCTCACTTGTAGAAATGTATTGCAAGTGTGGGAGAACGGATAAG GCATCTGTAATTCTGAAAGATGTACCTCTGAATTTGTTGAGAACAGGGAATTCTGGAGGAATAGTTCCATGGAATTCCAT GGTTTCTGGTTATGTTTGGAATGGAAAGTATGAAGACTGTTTGAAAACTTTCAGGTCAATGGTTCATGAACTGGCTATAG TGGATATTCGAACTGTTACAACCGTTATATCTGCTTGTGCTAATGCTGGACTTTTGGAATTCGGCAGGCAGATGCATGCC TACATTCAGAAAATTGGACATAGAATAGATGCTTATGTTGGTTCCTCCTTAATTCATATGTATTCTAAATCCGGTAGCTT GGATGATGCCTGGGTGATTTTCAGACAAATCAATGAACCAAATGTTTTCTTGTGGACTTCAATGATATCTGGCTGCGCGC TACATGGTAAAGGAAAGCAGGCAAGTAGTCTTTTTGAAGGAATGTTGAATCAGGGTATTGTACCGAATGAGGTTACTTTT TTAGGGGTTATAAATGCATGCAGCCATGTAGGGCTGCTTGAAGAAGGCTCCACATATTTTAGGATGATGAAAGATGTTTA TTGCATCAATCCCGGAGTTGAACACTGCACTTCTATGGTTGATCTTTATGGTCGAGCAGGTTGCTTAATTGAGACAAAAA ACTTTATCTTTGAGAATGGCATCTCTCACTTGACCTCTGTATGGAAATCATTTTTATCATCTTGTCGACTGCATAAAAAC ATTGAGATGGGAAAGTGGGTTTCTGAAATGTTGCTTCAAGTTGCACCATCTGATCCAGAAGCCTATATTTTGCTATCAAA TATGTGCACTTCTAATCATAGATGGGACGAGGCTGCCATGGTAAGGAGTTTGATGCATCAAAGAGGTGTGAAGAAGCAGC CTGGCCAATCTTGGATTCAGTTAAAGGATCAAACCCACACGTTTGTCATGGGAGATAGGTCTCACCAACAAGACAAGGAG ATATATTCATATCTGGACACTTTAGTAGGAAGGTTGAAGGAGATTGGATATTCCAGTGATGTGAATCCGGTCACGCAGGA TGTAGAAGATGAACAAGGGGAAGTACTTATTAGTCATCACAGTGAAAAACTTGCGCTTGTCTTTGGTATCATTAACACTG CCAATAGGACACCAATCCGAATCATGAAAAACCTCCGCATTTGTACCGATTGCCATAACTTCATCAAGTACGCTTCTCAG CTTCTGGAACGTGATATAATTGTGAGAGATTCTCATAGGTTCCATCATTTTAAGTATGGTAGTTGCTCTTGTGGAGATTA TTGGTGA
Protein sequence (LotjaGi1g1v0484600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDYRGLGSSCRKYAKLISATNCHIANSSFHFRLRHPCSSHHSTLSYVSSPPPLGALHAQYLKNGSLQTLNSANYILNLYV KSSNLDHAHKLFDEIPHRDTQTWTVLISGFARAGSSEMVFSLFREMQAKGACPNQYTLSSVFKCCSAEKNLQLGKGVHAW MLRNGVDADVVLVNSILDLYLKCKAFEYAERLFELTGEGDVVTWNIMIRAYLGAGDVEKSLDMFRNLPSKDVVSWNTIID GLIRCGYERRALELLFCMVENGTEFSEVTFSIALILASSLSLVELGKQLHGRVITLALNGDNFINSSLVEMYCKCGRTDK ASVILKDVPLNLLRTGNSGGIVPWNSMVSGYVWNGKYEDCLKTFRSMVHELAIVDIRTVTTVISACANAGLLEFGRQMHA YIQKIGHRIDAYVGSSLIHMYSKSGSLDDAWVIFRQINEPNVFLWTSMISGCALHGKGKQASSLFEGMLNQGIVPNEVTF LGVINACSHVGLLEEGSTYFRMMKDVYCINPGVEHCTSMVDLYGRAGCLIETKNFIFENGISHLTSVWKSFLSSCRLHKN IEMGKWVSEMLLQVAPSDPEAYILLSNMCTSNHRWDEAAMVRSLMHQRGVKKQPGQSWIQLKDQTHTFVMGDRSHQQDKE IYSYLDTLVGRLKEIGYSSDVNPVTQDVEDEQGEVLISHHSEKLALVFGIINTANRTPIRIMKNLRICTDCHNFIKYASQ LLERDIIVRDSHRFHHFKYGSCSCGDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 55 | 197 | 143 | 3.7E-26 | ||
| PANTHER | 56 | 151 | 96 | 5.2E-108 | – | |
| ProSiteProfiles | 68 | 98 | 31 | 6.632 | ||
| Pfam | 73 | 96 | 24 | 0.42 | ||
| Pfam | 99 | 145 | 47 | 3.0E-11 | ||
| ProSiteProfiles | 99 | 133 | 35 | 12.014 | ||
| TIGRFAM | 102 | 134 | 33 | 1.1E-7 | ||
| ProSiteProfiles | 134 | 168 | 35 | 7.18 | ||
| PANTHER | 138 | 227 | 90 | 5.2E-108 | – | |
| ProSiteProfiles | 169 | 199 | 31 | 6.226 | ||
| Gene3D | 198 | 295 | 98 | 8.1E-16 | ||
| ProSiteProfiles | 200 | 234 | 35 | 10.874 | ||
| TIGRFAM | 202 | 232 | 31 | 8.5E-6 | ||
| Pfam | 230 | 273 | 44 | 2.2E-7 | ||
| PANTHER | 234 | 409 | 176 | 5.2E-108 | – | |
| ProSiteProfiles | 235 | 265 | 31 | 6.401 | ||
| ProSiteProfiles | 301 | 335 | 35 | 6.95 | ||
| Pfam | 306 | 326 | 21 | 0.87 | ||
| Gene3D | 331 | 439 | 109 | 9.7E-18 | ||
| ProSiteProfiles | 340 | 370 | 31 | 8.473 | ||
| Pfam | 343 | 368 | 26 | 9.3E-6 | ||
| TIGRFAM | 344 | 368 | 25 | 0.0029 | ||
| ProSiteProfiles | 375 | 409 | 35 | 7.596 | ||
| PANTHER | 395 | 607 | 213 | 5.2E-108 | – | |
| ProSiteProfiles | 410 | 440 | 31 | 7.772 | ||
| Pfam | 415 | 437 | 23 | 0.17 | ||
| Pfam | 440 | 488 | 49 | 5.0E-10 | ||
| Gene3D | 440 | 640 | 201 | 2.9E-28 | ||
| ProSiteProfiles | 441 | 475 | 35 | 11.192 | ||
| TIGRFAM | 444 | 477 | 34 | 1.5E-6 | ||
| ProSiteProfiles | 476 | 510 | 35 | 7.213 | ||
| ProSiteProfiles | 578 | 612 | 35 | 8.079 | ||
| Pfam | 614 | 738 | 125 | 2.3E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0484600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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