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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0484600 |
| Transcript ID | LotjaGi1g1v0484600.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G23330.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330; TrEMBL-Plants: tr|A0A0B2S6X8|A0A0B2S6X8_GLYSO Putative pentatricopeptide repeat-containing protein; Found in the gene: LotjaGi1g1v0484600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:99808150..99811229) extracted from Lotus japonicus Gifu genome v1.2.
CGCCAAGCTTATTTCTGCGACCAATTGTCACATTGCTAACTCTTCATTTCACTTCCGTTTGCGCCATCCATGTTCCTCAC ATCATTCCACCTTATCCTATGTGTCATCACCACCACCACTAGGTGCTCTTCATGCCCAGTATTTGAAGAATGGTTCTCTT CAAACTTTGAACTCAGCTAACTATATCTTGAATCTCTACGTTAAATCCAGCAACTTAGACCATGCCCACAAGCTGTTTGA TGAAATTCCCCACAGAGACACTCAGACATGGACCGTCCTCATATCAGGTTTTGCTAGAGCTGGCTCTTCAGAGATGGTCT TTAGTCTTTTCAGAGAAATGCAGGCAAAGGGTGCTTGTCCAAATCAGTATACATTGTCTAGTGTCTTCAAGTGCTGCTCA GCTGAAAAGAATCTTCAATTGGGTAAGGGAGTCCATGCCTGGATGCTCAGAAATGGGGTTGATGCAGATGTTGTGCTGGT GAACTCTATCCTTGATCTTTACTTGAAATGCAAGGCTTTTGAATACGCAGAAAGGTTGTTTGAGTTGACCGGTGAGGGAG ATGTCGTGACGTGGAATATAATGATTCGTGCATATCTCGGTGCAGGAGATGTGGAGAAGTCTCTTGACATGTTCAGGAAC TTGCCTAGCAAGGATGTTGTGAGTTGGAATACAATCATCGACGGGCTGATACGATGCGGTTATGAAAGACGTGCGCTAGA ACTACTGTTCTGTATGGTGGAAAATGGGACTGAGTTCTCTGAAGTCACGTTCTCCATAGCTCTCATTTTGGCTTCTTCTT TATCACTGGTGGAGCTTGGGAAACAACTTCATGGGCGGGTCATAACATTGGCCTTGAATGGTGACAACTTTATAAATAGC TCACTTGTAGAAATGTATTGCAAGTGTGGGAGAACGGATAAGGCATCTGTAATTCTGAAAGATGTACCTCTGAATTTGTT GAGAACAGGGAATTCTGGAGGAATAGTTCCATGGAATTCCATGGTTTCTGGTTATGTTTGGAATGGAAAGTATGAAGACT GTTTGAAAACTTTCAGGTCAATGGTTCATGAACTGGCTATAGTGGATATTCGAACTGTTACAACCGTTATATCTGCTTGT GCTAATGCTGGACTTTTGGAATTCGGCAGGCAGATGCATGCCTACATTCAGAAAATTGGACATAGAATAGATGCTTATGT TGGTTCCTCCTTAATTCATATGTATTCTAAATCCGGTAGCTTGGATGATGCCTGGGTGATTTTCAGACAAATCAATGAAC CAAATGTTTTCTTGTGGACTTCAATGATATCTGGCTGCGCGCTACATGGTAAAGGAAAGCAGGCAAGTAGTCTTTTTGAA GGAATGTTGAATCAGGGTATTGTACCGAATGAGGTTACTTTTTTAGGGGTTATAAATGCATGCAGCCATGTAGGGCTGCT TGAAGAAGGCTCCACATATTTTAGGATGATGAAAGATGTTTATTGCATCAATCCCGGAGTTGAACACTGCACTTCTATGG TTGATCTTTATGGTCGAGCAGGTTGCTTAATTGAGACAAAAAACTTTATCTTTGAGAATGGCATCTCTCACTTGACCTCT GTATGGAAATCATTTTTATCATCTTGTCGACTGCATAAAAACATTGAGATGGGAAAGTGGGTTTCTGAAATGTTGCTTCA AGTTGCACCATCTGATCCAGAAGCCTATATTTTGCTATCAAATATGTGCACTTCTAATCATAGATGGGACGAGGCTGCCA TGGTAAGGAGTTTGATGCATCAAAGAGGTGTGAAGAAGCAGCCTGGCCAATCTTGGATTCAGTTAAAGGATCAAACCCAC ACGTTTGTCATGGGAGATAGGTCTCACCAACAAGACAAGGAGATATATTCATATCTGGACACTTTAGTAGGAAGGTTGAA GGAGATTGGATATTCCAGTGATGTGAATCCGGTCACGCAGGATGTAGAAGATGAACAAGGGGAAGTACTTATTAGTCATC ACAGTGAAAAACTTGCGCTTGTCTTTGGTATCATTAACACTGCCAATAGGACACCAATCCGAATCATGAAAAACCTCCGC ATTTGTACCGATTGCCATAACTTCATCAAGTACGCTTCTCAGCTTCTGGAACGTGATATAATTGTGAGAGATTCTCATAG GTTCCATCATTTTAAGTATGGTAGTTGCTCTTGTGGAGATTATTGGTGACAAAAGGTAAAGCATATGATTACCTAGTCTA GAATATAGCCTTGATGTTCTGAAACCACTCATCATAACTTGATGGTGTGGCATGTAAATCTCAACATCAGCCATCTAAAC CTTATGTTAGCAATGGAGCAAGAATGATAGCGGTAATCTTCTAAATTGTTGGTTCCAGGTTGCTTTAAATCTATGGTTCT GATTTTTTATATTTTCAATTTTTATTATAAGAAAAAAATCCACCAAGTTTATTCTAAATCTGTGGTTCCAGGTTACTTCA TCAAGTATCGCCTAAACTTAATGGAGCAAGAATGATAGCATTGGAGTGACATCAATTACCAAAGGTATTATTGATATATA TTTCAAATGCATATGCCAACCCAATGAATTTATTAAAAGTTTTGTTTGGTAAATAAAGCAAGTTTTTTAATTAATAGTTG TTTCTTGGCTTCAGCTAAAAGTTGTTTGCCTATCCCTACTTTGTTGAAAGTTAAAACCATTAGATTTGCCTATCCTGTCT TATGTTTGTAAACTTTGACCCAGAACCCACCTAACCTTATTGAATCTTGATGCTCAAGGGTTTGTACACCAAGGGAGCTC TGGCTCAAGTTTTGTCATCTATCATCTATGTTCTGGCTTTGCAGCTTCTATTAGCCTGTTGAAAGCCAATATAGCACTTC AATCTTCCCTTGCACTGCTCTCATATTCACTGTAATTAATCAGGCATAGCACAATGAGTTTTTTATTTTTCCAAAAATGA TGGTAATTTAGACTGGATTTGCTCCAGTGCTGTTTGTCTTAACAGTTAACAATGTCTGATGTATTAATAATGTACACCAT CTAGTTTTATCAAGAGAAAATCTTACAAGAGTCTTTGTCC
CDS sequence (LotjaGi1g1v0484600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCTTTAGTCTTTTCAGAGAAATGCAGGCAAAGGGTGCTTGTCCAAATCAGTATACATTGTCTAGTGTCTTCAAGTG CTGCTCAGCTGAAAAGAATCTTCAATTGGGTAAGGGAGTCCATGCCTGGATGCTCAGAAATGGGGTTGATGCAGATGTTG TGCTGGTGAACTCTATCCTTGATCTTTACTTGAAATGCAAGGCTTTTGAATACGCAGAAAGGTTGTTTGAGTTGACCGGT GAGGGAGATGTCGTGACGTGGAATATAATGATTCGTGCATATCTCGGTGCAGGAGATGTGGAGAAGTCTCTTGACATGTT CAGGAACTTGCCTAGCAAGGATGTTGTGAGTTGGAATACAATCATCGACGGGCTGATACGATGCGGTTATGAAAGACGTG CGCTAGAACTACTGTTCTGTATGGTGGAAAATGGGACTGAGTTCTCTGAAGTCACGTTCTCCATAGCTCTCATTTTGGCT TCTTCTTTATCACTGGTGGAGCTTGGGAAACAACTTCATGGGCGGGTCATAACATTGGCCTTGAATGGTGACAACTTTAT AAATAGCTCACTTGTAGAAATGTATTGCAAGTGTGGGAGAACGGATAAGGCATCTGTAATTCTGAAAGATGTACCTCTGA ATTTGTTGAGAACAGGGAATTCTGGAGGAATAGTTCCATGGAATTCCATGGTTTCTGGTTATGTTTGGAATGGAAAGTAT GAAGACTGTTTGAAAACTTTCAGGTCAATGGTTCATGAACTGGCTATAGTGGATATTCGAACTGTTACAACCGTTATATC TGCTTGTGCTAATGCTGGACTTTTGGAATTCGGCAGGCAGATGCATGCCTACATTCAGAAAATTGGACATAGAATAGATG CTTATGTTGGTTCCTCCTTAATTCATATGTATTCTAAATCCGGTAGCTTGGATGATGCCTGGGTGATTTTCAGACAAATC AATGAACCAAATGTTTTCTTGTGGACTTCAATGATATCTGGCTGCGCGCTACATGGTAAAGGAAAGCAGGCAAGTAGTCT TTTTGAAGGAATGTTGAATCAGGGTATTGTACCGAATGAGGTTACTTTTTTAGGGGTTATAAATGCATGCAGCCATGTAG GGCTGCTTGAAGAAGGCTCCACATATTTTAGGATGATGAAAGATGTTTATTGCATCAATCCCGGAGTTGAACACTGCACT TCTATGGTTGATCTTTATGGTCGAGCAGGTTGCTTAATTGAGACAAAAAACTTTATCTTTGAGAATGGCATCTCTCACTT GACCTCTGTATGGAAATCATTTTTATCATCTTGTCGACTGCATAAAAACATTGAGATGGGAAAGTGGGTTTCTGAAATGT TGCTTCAAGTTGCACCATCTGATCCAGAAGCCTATATTTTGCTATCAAATATGTGCACTTCTAATCATAGATGGGACGAG GCTGCCATGGTAAGGAGTTTGATGCATCAAAGAGGTGTGAAGAAGCAGCCTGGCCAATCTTGGATTCAGTTAAAGGATCA AACCCACACGTTTGTCATGGGAGATAGGTCTCACCAACAAGACAAGGAGATATATTCATATCTGGACACTTTAGTAGGAA GGTTGAAGGAGATTGGATATTCCAGTGATGTGAATCCGGTCACGCAGGATGTAGAAGATGAACAAGGGGAAGTACTTATT AGTCATCACAGTGAAAAACTTGCGCTTGTCTTTGGTATCATTAACACTGCCAATAGGACACCAATCCGAATCATGAAAAA CCTCCGCATTTGTACCGATTGCCATAACTTCATCAAGTACGCTTCTCAGCTTCTGGAACGTGATATAATTGTGAGAGATT CTCATAGGTTCCATCATTTTAAGTATGGTAGTTGCTCTTGTGGAGATTATTGGTGA
Protein sequence (LotjaGi1g1v0484600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVFSLFREMQAKGACPNQYTLSSVFKCCSAEKNLQLGKGVHAWMLRNGVDADVVLVNSILDLYLKCKAFEYAERLFELTG EGDVVTWNIMIRAYLGAGDVEKSLDMFRNLPSKDVVSWNTIIDGLIRCGYERRALELLFCMVENGTEFSEVTFSIALILA SSLSLVELGKQLHGRVITLALNGDNFINSSLVEMYCKCGRTDKASVILKDVPLNLLRTGNSGGIVPWNSMVSGYVWNGKY EDCLKTFRSMVHELAIVDIRTVTTVISACANAGLLEFGRQMHAYIQKIGHRIDAYVGSSLIHMYSKSGSLDDAWVIFRQI NEPNVFLWTSMISGCALHGKGKQASSLFEGMLNQGIVPNEVTFLGVINACSHVGLLEEGSTYFRMMKDVYCINPGVEHCT SMVDLYGRAGCLIETKNFIFENGISHLTSVWKSFLSSCRLHKNIEMGKWVSEMLLQVAPSDPEAYILLSNMCTSNHRWDE AAMVRSLMHQRGVKKQPGQSWIQLKDQTHTFVMGDRSHQQDKEIYSYLDTLVGRLKEIGYSSDVNPVTQDVEDEQGEVLI SHHSEKLALVFGIINTANRTPIRIMKNLRICTDCHNFIKYASQLLERDIIVRDSHRFHHFKYGSCSCGDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 16 | 16 | 5.294 | ||
| Gene3D | 1 | 109 | 109 | 3.8E-22 | ||
| PANTHER | 3 | 110 | 108 | 2.4E-98 | – | |
| ProSiteProfiles | 17 | 51 | 35 | 7.18 | ||
| ProSiteProfiles | 52 | 82 | 31 | 6.226 | ||
| ProSiteProfiles | 83 | 117 | 35 | 10.874 | ||
| TIGRFAM | 85 | 115 | 31 | 6.9E-6 | ||
| Gene3D | 110 | 218 | 109 | 6.6E-14 | ||
| Pfam | 113 | 156 | 44 | 1.8E-7 | ||
| ProSiteProfiles | 118 | 148 | 31 | 6.401 | ||
| PANTHER | 160 | 292 | 133 | 2.4E-98 | – | |
| ProSiteProfiles | 184 | 218 | 35 | 6.95 | ||
| Pfam | 189 | 209 | 21 | 0.71 | ||
| Gene3D | 219 | 320 | 102 | 8.7E-18 | ||
| ProSiteProfiles | 223 | 253 | 31 | 8.473 | ||
| Pfam | 226 | 251 | 26 | 7.6E-6 | ||
| TIGRFAM | 227 | 251 | 25 | 0.0024 | ||
| ProSiteProfiles | 258 | 292 | 35 | 7.596 | ||
| PANTHER | 278 | 490 | 213 | 2.4E-98 | – | |
| ProSiteProfiles | 293 | 323 | 31 | 7.772 | ||
| Pfam | 298 | 320 | 23 | 0.14 | ||
| Gene3D | 321 | 523 | 203 | 1.9E-28 | ||
| Pfam | 323 | 371 | 49 | 4.0E-10 | ||
| ProSiteProfiles | 324 | 358 | 35 | 11.192 | ||
| TIGRFAM | 327 | 360 | 34 | 1.3E-6 | ||
| ProSiteProfiles | 359 | 393 | 35 | 7.213 | ||
| ProSiteProfiles | 461 | 495 | 35 | 8.079 | ||
| Pfam | 497 | 621 | 125 | 1.8E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0484600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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