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LotjaGi1g1v0484900.1

Overview

Field Value
Gene ID LotjaGi1g1v0484900
Transcript ID LotjaGi1g1v0484900.1
Lotus japonicus genome version Gifu v1.2
Description Tyrosine phosphatase family protein; TAIR: AT3G02800.1 Tyrosine phosphatase family protein; Swiss-Prot: sp|Q9ZVN4|Y1500_ARATH Probable tyrosine-protein phosphatase At1g05000; TrEMBL-Plants: tr|I3T9B5|I3T9B5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0484900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:99828927..99831923) extracted from Lotus japonicus Gifu genome v1.2.

CGCACCGCGCCAACAGCAATCTAGGTGTCCGCCGTTTTGGAAAGTCATAAACCCACCAAACGACGCCGTTTCTGCCACCT TCAAAAACCCTTATTTTTCATTATCTATAAAACTCTGAATTTTGAAGAAGAAGAAGAAGAAGCAGAATCTCAATCAAACT CTCTATTTCAGATTCTGAATCCTCATCATCATCATCATCTTTTCAATTTCACTCTATAAATACTCATCAAATTCACATTC ATTTCGATTCAATTCAATTCACACACCATTGAATTTTCAGAGAGAGAGAAAGAGGAACAGTTGTTTATTGTTGAATGAAT GGGGATTCTTGTTGAGGTTGATAGCGGTGATGAAAGCGACGACGACGTTCTGGTTCCGCCGACGAACTTCTCCATGGTGG AGGATTGCATTTTCCGATCAAGTTTCCCCAACCCTTCAAATTTCCCCTTTCTCCGAACCCTAAACCTTCGCTCTGTCATG TTAGTTTCTCTTTTCTTGAATCTCAACTCGTTGCTTTTCTTTTGAAATTAATGATAAAGGGTATTCGAAACTGCAAGAAA AATTTGATTTTTTTGTTTTAATGTATGGGTTTTGGGAAATTCTGCAGATACTTGTGTCCTGAACCTTACCCGCAAGAGAA TCTGGAGTTTCTTCGGTCGGAGAATATTCAGCTTTTTCAATTTGGAATCGAGGGGAAGACGGTAATTTTCATTTCATTGG CTGTGCTGACATGTGTTGTCAATTTGTAATGTCATGTGATGTGAGTATTTGATATATGCTGATATGAACTGTTTGTTCAG AGTTTTGGAAGGTACTGAGAGTTTTGAAACCTGGGTTGTGGGAAATTTGGTTGGTTCTCTTAATTATGGATTTGGAAGAT AATTTTCCATTGGAATGGCAAAGAGCCCTAGGTTTAACTTTTGTTTTCAGTGGCTGTTAATTGTGGTATTTTGTTTTTAG GGGAAGGGAAGAATATCTGGATTTTATCACATACATGGGGGGTTGGTGTCAAGTGAATTGTTTTTTCTTATAGTGAAATA ACTGCAGCTAAAGCCCTTCTTTTTTTACATGTGGCTATGCATGATTGAATACTTGCTTGACTCTTATGATTGTATTGTAC AAGGGAATCTATTGACTAGTGGACATGAAATTTGATACATATTGATTGTGCTTTTCCTGATTCCATATCTAACAAGTCTT TGTATTATTTGCAGGATGTTTCTTTACCAATTCTCAGTGATTCTATCATGGAGGCTCTGAAAGTTTTAGTTGGTATGAAT TATAACATGCTCATTCAACTTTGAGATGCAGTTTTTTTTTCTTCTTTGGGTGCTTTTCTTGTATATTAGATTTGATGTTT AAATTGCCTTCATTTTTTGTGTGGTTTCAGATGTGAGAAATCATCCAGTTTTGATCCATTGCAAACGTGGAAAGGTATAG ATTCACTTAATGAGGATATCTTCTCATTATTTTTTTTTTCATTCTTTTTATTCTGATTCTGAGGGACCTTCTCTTCTTTA TTGCAGCATAGGACAGGTTGCCTAGTTGGTTGCTTTCGGAAATTCCAGAATTGGTGTTTGTCTTCTGTGTTTGAGGAGTA CCAGCGATTTGCCGGTGTTAAATCCAGAATAATGGATTTAAGCTTCATAGAAAAGTTTGACATCAAAATCCTGAGCCAGT GCCTTTACAGCATCATCTACCAGTACCATGGATATGGTTCGAAGAAGCGCCGGTTGTCGTATACAGAGGACAATTTACAG AAGCCCCGATTGACATCATTTTAACTGTGCCGGGGCATAACCCCTTTTTTCAAAATTTGATTTGTTAGGAGTTCATTCTT CATAGAAGTTGATCTGTCATTGATACCTATTAAAAGTTAGAATTTTCAATGATCTTTAGAGTATACACACATTGCCTTTT ATCTTTCACCCCCTTCTCAGCCCCCATTCCAATTGTCATTATTTTACACAACTATAGAAATACAATGGTGCAAACATTTA TTTTGAAAACAATTATTAGCTTTGATCTGCTATTGTCAAGGATTGGTTCTGTCCAACAGAAGTTTTTGAAGATAGAGCAT CATTTCCTTTAAATGGATAAGGTTGGACGGGACTAGTCCAGGTTCAATCTACAATGTGGAGGAAGAAACATAGGACTGAT TTAGAGGTGACAATTTTGAATCAGTCAATTGTGAAGTCGATGAGACCAAAGTGTTACCACAAGTTGTGCAAAAGAAGCTT CTGAAGAGTGAAGATAGAGTATCATTTTCTTTAAATGGACAAGCTATGGCTTTGAGCACATCATTGATGATTATTATTGG AATTTGATGACGCGTACTTCTCGCCTTACAAAAGTTGCTTTTAATATTTCCGCCTAGAATTACAAGGTGCAATACTTTAG TGAAAAAGACATTATCGTGGATTGATGGGGACAATGTGGTATTCTCTGGGTGGTGAAAAATTATGTTCCGAATAGTAGTT TTTAGAATGTAATTTTACATTTTACATTTGAGAAATTAGTTTCCGAGATTATCAGATAACAAATTACATTTTGAGATAGA AATATACTTTTCAGAACAAATTTTATCATTTAATTGAAGATCATTAGTAGAATGTCTGATAAAGAACGAGCAAGAATACA AATAGGAAAGCTTGCAGTCCAAACACTGTCTGCATGACACAGTGAGCATACAAATAAGAACTATTGAGTCTCCTTGCTAA TCGCTTTAAGTACATATTCACAATCAGACTCCAGAACTATTTAAGAGAAACCTAACCTTGAAGCAATCCATTCCCAACTT GATACCCGAAGCATCTACCATTAGAGCCCCCACACCCATCCCCTATGTTTTAGTCCCTGCCCTAATAACAATGTCATCAA TAGAGGATACTTGTAAGCACCCAAAAAATTCACAATTTTTTATTCTTCAAAAAACAAAACAGAAAGCGAAAACAACTAAG CACAAGAAAACAAGTCCCTAACAATTTATTATAAATT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0484900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGATTCTTGTTGAGGTTGATAGCGGTGATGAAAGCGACGACGACGTTCTGGTTCCGCCGACGAACTTCTCCATGGT GGAGGATTGCATTTTCCGATCAAGTTTCCCCAACCCTTCAAATTTCCCCTTTCTCCGAACCCTAAACCTTCGCTCTGTCA TATACTTGTGTCCTGAACCTTACCCGCAAGAGAATCTGGAGTTTCTTCGGTCGGAGAATATTCAGCTTTTTCAATTTGGA ATCGAGGGGAAGACGGATGTTTCTTTACCAATTCTCAGTGATTCTATCATGGAGGCTCTGAAAGTTTTAGTTGATGTGAG AAATCATCCAGTTTTGATCCATTGCAAACGTGGAAAGCATAGGACAGGTTGCCTAGTTGGTTGCTTTCGGAAATTCCAGA ATTGGTGTTTGTCTTCTGTGTTTGAGGAGTACCAGCGATTTGCCGGTGTTAAATCCAGAATAATGGATTTAAGCTTCATA GAAAAGTTTGACATCAAAATCCTGAGCCAGTGCCTTTACAGCATCATCTACCAGTACCATGGATATGGTTCGAAGAAGCG CCGGTTGTCGTATACAGAGGACAATTTACAGAAGCCCCGATTGACATCATTTTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0484900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGILVEVDSGDESDDDVLVPPTNFSMVEDCIFRSSFPNPSNFPFLRTLNLRSVIYLCPEPYPQENLEFLRSENIQLFQFG IEGKTDVSLPILSDSIMEALKVLVDVRNHPVLIHCKRGKHRTGCLVGCFRKFQNWCLSSVFEEYQRFAGVKSRIMDLSFI EKFDIKILSQCLYSIIYQYHGYGSKKRRLSYTEDNLQKPRLTSF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31126:SF43
12 201 190 1.4E-95 –
PANTHER
PTHR31126
12 201 190 1.4E-95 –
Gene3D
G3DSA:3.90.190.10
17 167 151 6.3E-50
IPR029021
PRINTS
PR01911
18 35 18 2.3E-25
IPR020428
SUPERFAMILY
SSF52799
18 161 144 1.36E-38
IPR029021
Pfam
PF03162
18 170 153 6.5E-61
IPR004861
CDD
cd14528
18 164 147 2.56507E-83 –
PRINTS
PR01911
55 68 14 2.3E-25
IPR020428
PRINTS
PR01911
74 88 15 2.3E-25
IPR020428
PRINTS
PR01911
91 105 15 2.3E-25
IPR020428
ProSitePatterns
PS00383
113 123 11 -
IPR016130

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004725
Molecular function Protein tyrosine phosphatase activity Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
Subterm of
GO:0016311
Biological process Dephosphorylation The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
Subterm of
GO:0016791
Molecular function Phosphatase activity Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0484900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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