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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0493300 |
| Transcript ID | LotjaGi1g1v0493300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT1G71460.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q9C9I3|PP115_ARATH Pentatricopeptide repeat-containing protein At1g71460, chloroplastic; TrEMBL-Plants: tr|K7LFV1|K7LFV1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0493300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:100674464..100679145) extracted from Lotus japonicus Gifu genome v1.2.
ATAACATTTGATTATGTAATTTGCAATCACAAGATAATCCAAGCATAGTGAAAGTAAAATAACCCCCCCCCCCATACATA TAAATTATCCACTCCATTTGGTGATAAGTGCAGTGATTGTTTTGGAACCATCCAAATCAATGGAATCCTCTGTTTCAGCC ACTGCATCACTCTCCCCTCGTTTCCCTCCAAACCCAATACCCAAAACCTTCCAAGTCTTCAGCTTCAAACCTTCGCCACA TTCACCACCACCACCGTCCACCGCCACAAAAACCCGCCACAAAAAACTGCCAAGATTCACCACCAAGAAGCAGCAGAGCA GCAACAAGAACAAGGTGAAACCATTCAGAGAACAAGATGCTTTCCCATGCTCCTTACCCCTCCACAACAAAAACCCACAA TTCATTTACAAAGACATCAAGAGCTTCGCTCGCCAGAACAAGCTCAAGGAAGCTCTCACCATTTTGGACTACATGGACCA ACAGGGTATCCCTGTCAACCCCACAACCTTCTCTGCTGTCATCGCTGCTTGCATCCGCATCAAGTCATTGCAACAAGGAA GGGAAGTTCATACCCATATTCGAATCAATGGGCTTGAGAGTAACGTTTTTTTGCGGACAAAGCTGGTTCATATGTATACT TCTTGTGGGTCGTTGGAAGATGCACGCAAACTGTTTGATGGGTTGTCATGTGAGAGTGTTTATCCCTGGAATGCTTTGCT CAGAGGGACTGTGATTTCGGGCAAGAGACGATGCGGTGATGTGGTGGAGGCTTATTCAGAGATGAGAGCTTTGGGGGTTG AGTTGAATGTGTATAGTTTCACCAATGTTATTAAGAGCTTTGCGGGCGCGTCGGCGTTTTTTCAGGGATTGAAGACTCAT GCCCTTTTGGTTAAGAATGGTTTGGTGGATAACCCCATTCTTAGGACTAGTCTGATTGATATGTACTTCAAGTGTGGTAA AGTTAAGCTTGCCCGTCGCGTGTTTGAGGAAATGTCTGAAAGGGATGTTGTTGTGTGGGGTGCTATGCTTGCTGGTTTCG CGCATAACAGGTTGCAGAGGGAAGTTTTGGAGTATGTAAGGTGGATGGTAGATGAAGGGGTAAAGCCGAATTCGGTTATA ATGACAATTGTTATTCCTGTCGTTGGGGAAGTTCGTGCGCGGAGGTTGGGTCAGGAGCTTCATGCTTATGTGGTGAAGAC AAAATCGTACTCGAAGCAAGTGCCTATTCAATCTGCTTTGATTGACATGTACAGCAAGTGCGGTGATCTGAGATCTGCAA GACAAGTTTTTTATAGCTCGGCGGAGAGAAATGTGGTTTGTTGGACGGCTCTGATGTCAGGTTATGCTTCCATTGGCAAA CTAGAGCAGGCACTGAGGTCCACTATTTGGATGCAGCAAGAAGGGTTCAGGCCTGATGTTGTGACAATTGCCACTGTTCT TCCAATTTGTGCTCAGTTAAGGGCTTTGGAACAAGGGAAGCAGATTCATGCTTATGCTTTGAAACATTGGTTTCTACCTA ATGTATCTATAACTTCTTCGTTAATGGTAATGTACTCTAAGTGCGGTGTGATTGATTATTCTGCAAGACTATTTGATGTA ATGGAGCAAAGGAATGTGATTTCATGGACAGCTATGATTGATTCATATATGGAAAATGGGTATCTGTATGAAGCACTTGG TGTGATAAGGTCAATGCAATTGTCAAAACATAGGCCTGACTCAGTTGCCATATCAAGGATGTTGAGTGTTTGTGGTGAAC TAAAACTTTCAAAGCTTGGGAAAGAGATTCATGGCCAGATCTTGAGAAGGGACTTTTCATCAGTCCATTTTGTTTCTGCA GAACTTATCAATATGTATGGCGCTTTAGGAGATGTTAATAAGGCAAAGCTAGTATTTGATGCTGTTCCTGCTAAAGGTTC TATGACATGGACTGCTCTAATAAGGGCCCATGGATATAATGAGTTGTATCAAGATGCAATTGACCTTTTTGATCATATGC GGTCTAATGGTTCTTCTCCAAATCATTTCACTTTTGAAGTCATTCTGTTTATATGTGACAGAGCTGGATTTGTTGGTGAT GCTTGTAGAATCTTCAATTTAATACCTAGGTATAAAATTAAAGCATCTAAGGAACATTTTGCTATAATGGTCCGACTTCT TACCCGCTGTGGTAAACTAGAGCAAGCTCAGAGATTTGTACAAATGAGTTCTTCCTTATAGAAGAGGCAACACCACCTTT TCATTCTGAAAGATTTTTATTGTCAATACAGAACATGTAACTTTTGGCTCATAATCGGTAAGTTGTAATTTATTTGTGAT TTTTCTCTATACTAAATAGAACAAACTGTATCAAAGTCGCAGAGTTGCATGAATTGGATATCACTGGCACTGCTAGTATC CTTTAGTTCGATTGATCTTAGTGACCAAATCTTTAATGTCATGGGCTCATGGCCACTTAATTTGGTTGTGCACATCACAT AATTGAGACGAAATATTGTATGAGAGCACATCACATATTTGAGACAAAATATTGTATGAGAGAGATGCTTATGCCTTGCT TTTGGGGCTTAAAGTGATTTACCTATGCTAAAGGTGAGACTGAAAAGACAATAGAGCATGTCATAAGTATTGGTTGTTTG TTTTAATTACAAAAATGAAGGTTAAGAATAGAAATCAAAGAGGCATTAGAGGGTTGGTTTAAGGTTTTCTTCATTGTGAC TAAGCAGGACTAACAGATGCAGGGAAGCATAATCTCTGCAATCAGCAACAATGAGAAGGCTTCCAATGAGGATGTGATGA CTGTGGCCAAACTCAAAATTTCACCATGTTCGAACAGCCTCACATCCAGGACTACTGGACCAGGCCCAGGGCCAACTACT TTTGATGATAATCCTTGTGATGACAAGACTTGGGTGCATTTGTTTCAGGTTATATATTAATAGTCTGGGAAATATACATG TTAGGAATTTGTGTCCCTTTGTTTAGTACAAGGTTGAAAAGATTATTCTTGGTACAAAATATTCCCAGGAAAAATATTTC TCACATTTTTGGTGGTTTCCATTCTTAAAGAGATGGGTGGGAAAGAAACATTCCCATGTTGTGGGAATGCAATTTGGAGT GTGAAAGTCCAACGTTGCCCATGATTCCTGTGACAATTCTCATCTCTCCCCTACTGGCCAAGTTTTCCCTCCATTCTTCA TCTTTTCTTGTTTTGTAGAGAAAATCCCTCTTCCAGAGAAGCAGATCTCAGCTTCCACTCCAGGTATGTAATTCTATCTC ACTCTCTAATTTTTGCCCTTTTTTTATGTTTGTAAAGAGAATGCAATCATGAAGCTTACACAGTTTTTTAACTTTTCTTA TCGATGCATTAGAAAGGTTTAGCTGCACATACCAATTCTTTGTCAAGTATTGTCTATTGCATCAGTTTGTTTGTCCTGTT GGACAGCCTGCATACTTTTTTCTTATGTCAATTTTTTTTTCTGGCATACCTAGGTAGTCAGTTAAGTTAAATAAGCCTCT TGGATCACACTCAATCTTCTACTTCTCATTTACTTGCAACTCATTTCGAACTTTAGAATCCAGCAGTACATATGCTGCAC CGAATTTGTGGTTTGCATGATTCACTTTCAATTATCTTGTCTTATTACCTAAGGAGGACAGTGAAAACTTTTTCAGCATG AGTTCTTGCAAATTAAAACTATATGGGATTTTATTATATAAAAAAATTCTTAAATTGGCAGTTTGGCACCATTTCAAAAT GATAGGGAGTGATTATTTGAAAAAATTTAAGATGTTAGGTGAAAGCACATGAATGATTTTATATATGGAAAAAAAAAATT ATATATAGGACTGTATTTTTTTGTTTGTTTGTTTTCGCTTGATTGATCTTGTATTCATATTTGTTTCATAGTGTACATCA AATTAATAATACAAAATAATGGTGAAATTGACAAATATGTTACACACAGAATTCAAGCTGGGTGGTTAAAGTGGAGAAAA ACATCAAGAGTTATTTGCGACCGCCAAGTACCTATTGAGCTCAAAGGAAAAGTTTTATCGAACTCAAAGGAAAATTCTAT TGAACTGCTATAAGACTGTTGTTGCCTGTGGTAGCAAATGTTGAGCCTTAACGGGACAACATGAGAAAAAAGTGAGAGTA AGAGAAATGAGAATGTTAAGAAGGATGAGTGACCACACTAGAAACGATAAGATATGCAATGAGCGTGTAAAAGGAGATAT TAACGTGTGGCGCTTATCAATGAGAAGCTGATGGAAAATTGGTTAATTTGGTATGGTTATATGCAAAGAAGACTTTTGAG GCATTAGTGACTAGGGTTCATAATATGGTCCTTAGTCCTGTGAAGAGGAGTAGAGGGAGACAAAAAAATCATTTTGGTAG GCATCCTTTAATTTGGTGGACATGTGATGTAATTTGTTGGGTTTGTGTATTCTGCAGTTTTAGGGAGTTTAGGTTTATTC ATTTGAGATGTGTAAAACTTCAACTACGTGATAGTGAAATAGTTGTTACTTAAATGTTGGATTGAGATAATTATATCATT TCTGGCGGCTGGTAAAATTCTCTTGACAGGTTATGCTATTTTTGGGATGTTGACAATACAAAAGAGACTTTGCCGAATTT TTCATAAAACTTTGGAAGCATTTTCATTTTGAAAAGTTATTT
CDS sequence (LotjaGi1g1v0493300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCCTCTGTTTCAGCCACTGCATCACTCTCCCCTCGTTTCCCTCCAAACCCAATACCCAAAACCTTCCAAGTCTT CAGCTTCAAACCTTCGCCACATTCACCACCACCACCGTCCACCGCCACAAAAACCCGCCACAAAAAACTGCCAAGATTCA CCACCAAGAAGCAGCAGAGCAGCAACAAGAACAAGGTGAAACCATTCAGAGAACAAGATGCTTTCCCATGCTCCTTACCC CTCCACAACAAAAACCCACAATTCATTTACAAAGACATCAAGAGCTTCGCTCGCCAGAACAAGCTCAAGGAAGCTCTCAC CATTTTGGACTACATGGACCAACAGGGTATCCCTGTCAACCCCACAACCTTCTCTGCTGTCATCGCTGCTTGCATCCGCA TCAAGTCATTGCAACAAGGAAGGGAAGTTCATACCCATATTCGAATCAATGGGCTTGAGAGTAACGTTTTTTTGCGGACA AAGCTGGTTCATATGTATACTTCTTGTGGGTCGTTGGAAGATGCACGCAAACTGTTTGATGGGTTGTCATGTGAGAGTGT TTATCCCTGGAATGCTTTGCTCAGAGGGACTGTGATTTCGGGCAAGAGACGATGCGGTGATGTGGTGGAGGCTTATTCAG AGATGAGAGCTTTGGGGGTTGAGTTGAATGTGTATAGTTTCACCAATGTTATTAAGAGCTTTGCGGGCGCGTCGGCGTTT TTTCAGGGATTGAAGACTCATGCCCTTTTGGTTAAGAATGGTTTGGTGGATAACCCCATTCTTAGGACTAGTCTGATTGA TATGTACTTCAAGTGTGGTAAAGTTAAGCTTGCCCGTCGCGTGTTTGAGGAAATGTCTGAAAGGGATGTTGTTGTGTGGG GTGCTATGCTTGCTGGTTTCGCGCATAACAGGTTGCAGAGGGAAGTTTTGGAGTATGTAAGGTGGATGGTAGATGAAGGG GTAAAGCCGAATTCGGTTATAATGACAATTGTTATTCCTGTCGTTGGGGAAGTTCGTGCGCGGAGGTTGGGTCAGGAGCT TCATGCTTATGTGGTGAAGACAAAATCGTACTCGAAGCAAGTGCCTATTCAATCTGCTTTGATTGACATGTACAGCAAGT GCGGTGATCTGAGATCTGCAAGACAAGTTTTTTATAGCTCGGCGGAGAGAAATGTGGTTTGTTGGACGGCTCTGATGTCA GGTTATGCTTCCATTGGCAAACTAGAGCAGGCACTGAGGTCCACTATTTGGATGCAGCAAGAAGGGTTCAGGCCTGATGT TGTGACAATTGCCACTGTTCTTCCAATTTGTGCTCAGTTAAGGGCTTTGGAACAAGGGAAGCAGATTCATGCTTATGCTT TGAAACATTGGTTTCTACCTAATGTATCTATAACTTCTTCGTTAATGGTAATGTACTCTAAGTGCGGTGTGATTGATTAT TCTGCAAGACTATTTGATGTAATGGAGCAAAGGAATGTGATTTCATGGACAGCTATGATTGATTCATATATGGAAAATGG GTATCTGTATGAAGCACTTGGTGTGATAAGGTCAATGCAATTGTCAAAACATAGGCCTGACTCAGTTGCCATATCAAGGA TGTTGAGTGTTTGTGGTGAACTAAAACTTTCAAAGCTTGGGAAAGAGATTCATGGCCAGATCTTGAGAAGGGACTTTTCA TCAGTCCATTTTGTTTCTGCAGAACTTATCAATATGTATGGCGCTTTAGGAGATGTTAATAAGGCAAAGCTAGTATTTGA TGCTGTTCCTGCTAAAGGTTCTATGACATGGACTGCTCTAATAAGGGCCCATGGATATAATGAGTTGTATCAAGATGCAA TTGACCTTTTTGATCATATGCGGTCTAATGGTTCTTCTCCAAATCATTTCACTTTTGAAGTCATTCTGTTTATATGTGAC AGAGCTGGATTTGTTGGTGATGCTTGTAGAATCTTCAATTTAATACCTAGGTATAAAATTAAAGCATCTAAGGAACATTT TGCTATAATGGTCCGACTTCTTACCCGCTGTGGTAAACTAGAGCAAGCTCAGAGATTTGTACAAATGAGTTCTTCCTTAT AG
Protein sequence (LotjaGi1g1v0493300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESSVSATASLSPRFPPNPIPKTFQVFSFKPSPHSPPPPSTATKTRHKKLPRFTTKKQQSSNKNKVKPFREQDAFPCSLP LHNKNPQFIYKDIKSFARQNKLKEALTILDYMDQQGIPVNPTTFSAVIAACIRIKSLQQGREVHTHIRINGLESNVFLRT KLVHMYTSCGSLEDARKLFDGLSCESVYPWNALLRGTVISGKRRCGDVVEAYSEMRALGVELNVYSFTNVIKSFAGASAF FQGLKTHALLVKNGLVDNPILRTSLIDMYFKCGKVKLARRVFEEMSERDVVVWGAMLAGFAHNRLQREVLEYVRWMVDEG VKPNSVIMTIVIPVVGEVRARRLGQELHAYVVKTKSYSKQVPIQSALIDMYSKCGDLRSARQVFYSSAERNVVCWTALMS GYASIGKLEQALRSTIWMQQEGFRPDVVTIATVLPICAQLRALEQGKQIHAYALKHWFLPNVSITSSLMVMYSKCGVIDY SARLFDVMEQRNVISWTAMIDSYMENGYLYEALGVIRSMQLSKHRPDSVAISRMLSVCGELKLSKLGKEIHGQILRRDFS SVHFVSAELINMYGALGDVNKAKLVFDAVPAKGSMTWTALIRAHGYNELYQDAIDLFDHMRSNGSSPNHFTFEVILFICD RAGFVGDACRIFNLIPRYKIKASKEHFAIMVRLLTRCGKLEQAQRFVQMSSSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 67 | 67 | - | – | |
| ProSiteProfiles | 85 | 119 | 35 | 6.917 | ||
| Gene3D | 87 | 239 | 153 | 4.5E-20 | ||
| Pfam | 93 | 117 | 25 | 1.3 | ||
| PANTHER | 104 | 243 | 140 | 5.5E-101 | – | |
| ProSiteProfiles | 120 | 154 | 35 | 7.837 | ||
| ProSiteProfiles | 155 | 189 | 35 | 7.936 | ||
| ProSiteProfiles | 223 | 257 | 35 | 6.007 | ||
| PANTHER | 229 | 332 | 104 | 5.5E-101 | – | |
| Gene3D | 240 | 356 | 117 | 1.3E-17 | ||
| ProSiteProfiles | 258 | 288 | 31 | 9.043 | ||
| Pfam | 263 | 289 | 27 | 1.1E-4 | ||
| TIGRFAM | 263 | 291 | 29 | 1.9E-5 | ||
| ProSiteProfiles | 289 | 323 | 35 | 10.03 | ||
| PANTHER | 342 | 448 | 107 | 5.5E-101 | – | |
| Gene3D | 357 | 454 | 98 | 1.2E-16 | ||
| ProSiteProfiles | 360 | 390 | 31 | 6.116 | ||
| Pfam | 365 | 386 | 22 | 0.17 | ||
| Pfam | 390 | 434 | 45 | 2.4E-8 | ||
| ProSiteProfiles | 391 | 425 | 35 | 10.622 | ||
| ProSiteProfiles | 426 | 460 | 35 | 5.897 | ||
| PANTHER | 442 | 550 | 109 | 5.5E-101 | – | |
| Gene3D | 455 | 551 | 97 | 3.5E-7 | ||
| ProSiteProfiles | 461 | 491 | 31 | 6.818 | ||
| ProSiteProfiles | 492 | 526 | 35 | 10.019 | ||
| Pfam | 494 | 520 | 27 | 1.5E-4 | ||
| TIGRFAM | 494 | 528 | 35 | 2.2E-5 | ||
| ProSiteProfiles | 527 | 561 | 35 | 5.886 | ||
| PANTHER | 546 | 687 | 142 | 5.5E-101 | – | |
| Gene3D | 552 | 692 | 141 | 5.3E-20 | ||
| Pfam | 593 | 636 | 44 | 1.2E-8 | ||
| ProSiteProfiles | 593 | 627 | 35 | 10.117 | ||
| TIGRFAM | 596 | 628 | 33 | 2.3E-6 | ||
| ProSiteProfiles | 628 | 662 | 35 | 6.665 | ||
| ProSiteProfiles | 663 | 693 | 31 | 6.084 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0493300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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