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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0493300 |
| Transcript ID | LotjaGi1g1v0493300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT1G71460.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q9C9I3|PP115_ARATH Pentatricopeptide repeat-containing protein At1g71460, chloroplastic; TrEMBL-Plants: tr|K7LFV1|K7LFV1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0493300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:100674612..100676684) extracted from Lotus japonicus Gifu genome v1.2.
TCTGTTTCAGCCACTGCATCACTCTCCCCTCGTTTCCCTCCAAACCCAATACCCAAAACCTTCCAAGTCTTCAGCTTCAA ACCTTCGCCACATTCACCACCACCACCGTCCACCGCCACAAAAACCCGCCACAAAAAACTGCCAAGATTCACCACCAAGA AGCAGCAGAGCAGCAACAAGAACAAGGTGAAACCATTCAGAGAACAAGATGCTTTCCCATGCTCCTTACCCCTCCACAAC AAAAACCCACAATTCATTTACAAAGACATCAAGAGCTTCGCTCGCCAGAACAAGCTCAAGGAAGCTCTCACCATTTTGGA CTACATGGACCAACAGGGTATCCCTGTCAACCCCACAACCTTCTCTGCTGTCATCGCTGCTTGCATCCGCATCAAGTCAT TGCAACAAGGAAGGGAAGTTCATACCCATATTCGAATCAATGGGCTTGAGAGTAACGTTTTTTTGCGGACAAAGCTGGTT CATATGTATACTTCTTGTGGGTCGTTGGAAGATGCACGCAAACTGTTTGATGGGTTGTCATGTGAGAGTGTTTATCCCTG GAATGCTTTGCTCAGAGGGACTGTGATTTCGGGCAAGAGACGATGCGGTGATGTGGTGGAGGCTTATTCAGAGATGAGAG CTTTGGGGGTTGAGTTGAATGTGTATAGTTTCACCAATGTTATTAAGAGCTTTGCGGGCGCGTCGGCGTTTTTTCAGGGA TTGAAGACTCATGCCCTTTTGGTTAAGAATGGTTTGGTGGATAACCCCATTCTTAGGACTAGTCTGATTGATATGTACTT CAAGTGTGGTAAAGTTAAGCTTGCCCGTCGCGTGTTTGAGGAAATGTCTGAAAGGGATGTTGTTGTGTGGGGTGCTATGC TTGCTGGTTTCGCGCATAACAGGTTGCAGAGGGAAGTTTTGGAGTATGTAAGGTGGATGGTAGATGAAGGGGTAAAGCCG AATTCGGTTATAATGACAATTGTTATTCCTGTCGTTGGGGAAGTTCGTGCGCGGAGGTTGGGTCAGGAGCTTCATGCTTA TGTGGTGAAGACAAAATCGTACTCGAAGCAAGTGCCTATTCAATCTGCTTTGATTGACATGTACAGCAAGTGCGGTGATC TGAGATCTGCAAGACAAGTTTTTTATAGCTCGGCGGAGAGAAATGTGGTTTGTTGGACGGCTCTGATGTCAGGTTATGCT TCCATTGGCAAACTAGAGCAGGCACTGAGGTCCACTATTTGGATGCAGCAAGAAGGGTTCAGGCCTGATGTTGTGACAAT TGCCACTGTTCTTCCAATTTGTGCTCAGTTAAGGGCTTTGGAACAAGGGAAGCAGATTCATGCTTATGCTTTGAAACATT GGTTTCTACCTAATGTATCTATAACTTCTTCGTTAATGGTAATGTACTCTAAGTGCGGTGTGATTGATTATTCTGCAAGA CTATTTGATGTAATGGAGCAAAGGAATGTGATTTCATGGACAGCTATGATTGATTCATATATGGAAAATGGGTATCTGTA TGAAGCACTTGGTGTGATAAGGTCAATGCAATTGTCAAAACATAGGCCTGACTCAGTTGCCATATCAAGGATGTTGAGTG TTTGTGGTGAACTAAAACTTTCAAAGCTTGGGAAAGAGATTCATGGCCAGATCTTGAGAAGGGACTTTTCATCAGTCCAT TTTGTTTCTGCAGAACTTATCAATATGTATGGCGCTTTAGGAGATGTTAATAAGGCAAAGCTAGTATTTGATGCTGTTCC TGCTAAAGGTTCTATGACATGGACTGCTCTAATAAGGGCCCATGGATATAATGAGTTGTATCAAGATGCAATTGACCTTT TTGATCATATGCGGTCTAATGGTTCTTCTCCAAATCATTTCACTTTTGAAGTCATTCTGTTTATATGTGACAGAGCTGGA TTTGTTGGTGATGCTTGTAGAATCTTCAATTTAATACCTAGGTATAAAATTAAAGCATCTAAGGAACATTTTGCTATAAT GGTCCGACTTCTTACCCGCTGTGGTAAACTAGAGCAAGCTCAGAGATTTGTACAAATGAGTTCTTCCTTATAG
CDS sequence (LotjaGi1g1v0493300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCAACAGGGTATCCCTGTCAACCCCACAACCTTCTCTGCTGTCATCGCTGCTTGCATCCGCATCAAGTCATTGCA ACAAGGAAGGGAAGTTCATACCCATATTCGAATCAATGGGCTTGAGAGTAACGTTTTTTTGCGGACAAAGCTGGTTCATA TGTATACTTCTTGTGGGTCGTTGGAAGATGCACGCAAACTGTTTGATGGGTTGTCATGTGAGAGTGTTTATCCCTGGAAT GCTTTGCTCAGAGGGACTGTGATTTCGGGCAAGAGACGATGCGGTGATGTGGTGGAGGCTTATTCAGAGATGAGAGCTTT GGGGGTTGAGTTGAATGTGTATAGTTTCACCAATGTTATTAAGAGCTTTGCGGGCGCGTCGGCGTTTTTTCAGGGATTGA AGACTCATGCCCTTTTGGTTAAGAATGGTTTGGTGGATAACCCCATTCTTAGGACTAGTCTGATTGATATGTACTTCAAG TGTGGTAAAGTTAAGCTTGCCCGTCGCGTGTTTGAGGAAATGTCTGAAAGGGATGTTGTTGTGTGGGGTGCTATGCTTGC TGGTTTCGCGCATAACAGGTTGCAGAGGGAAGTTTTGGAGTATGTAAGGTGGATGGTAGATGAAGGGGTAAAGCCGAATT CGGTTATAATGACAATTGTTATTCCTGTCGTTGGGGAAGTTCGTGCGCGGAGGTTGGGTCAGGAGCTTCATGCTTATGTG GTGAAGACAAAATCGTACTCGAAGCAAGTGCCTATTCAATCTGCTTTGATTGACATGTACAGCAAGTGCGGTGATCTGAG ATCTGCAAGACAAGTTTTTTATAGCTCGGCGGAGAGAAATGTGGTTTGTTGGACGGCTCTGATGTCAGGTTATGCTTCCA TTGGCAAACTAGAGCAGGCACTGAGGTCCACTATTTGGATGCAGCAAGAAGGGTTCAGGCCTGATGTTGTGACAATTGCC ACTGTTCTTCCAATTTGTGCTCAGTTAAGGGCTTTGGAACAAGGGAAGCAGATTCATGCTTATGCTTTGAAACATTGGTT TCTACCTAATGTATCTATAACTTCTTCGTTAATGGTAATGTACTCTAAGTGCGGTGTGATTGATTATTCTGCAAGACTAT TTGATGTAATGGAGCAAAGGAATGTGATTTCATGGACAGCTATGATTGATTCATATATGGAAAATGGGTATCTGTATGAA GCACTTGGTGTGATAAGGTCAATGCAATTGTCAAAACATAGGCCTGACTCAGTTGCCATATCAAGGATGTTGAGTGTTTG TGGTGAACTAAAACTTTCAAAGCTTGGGAAAGAGATTCATGGCCAGATCTTGAGAAGGGACTTTTCATCAGTCCATTTTG TTTCTGCAGAACTTATCAATATGTATGGCGCTTTAGGAGATGTTAATAAGGCAAAGCTAGTATTTGATGCTGTTCCTGCT AAAGGTTCTATGACATGGACTGCTCTAATAAGGGCCCATGGATATAATGAGTTGTATCAAGATGCAATTGACCTTTTTGA TCATATGCGGTCTAATGGTTCTTCTCCAAATCATTTCACTTTTGAAGTCATTCTGTTTATATGTGACAGAGCTGGATTTG TTGGTGATGCTTGTAGAATCTTCAATTTAATACCTAGGTATAAAATTAAAGCATCTAAGGAACATTTTGCTATAATGGTC CGACTTCTTACCCGCTGTGGTAAACTAGAGCAAGCTCAGAGATTTGTACAAATGAGTTCTTCCTTATAG
Protein sequence (LotjaGi1g1v0493300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDQQGIPVNPTTFSAVIAACIRIKSLQQGREVHTHIRINGLESNVFLRTKLVHMYTSCGSLEDARKLFDGLSCESVYPWN ALLRGTVISGKRRCGDVVEAYSEMRALGVELNVYSFTNVIKSFAGASAFFQGLKTHALLVKNGLVDNPILRTSLIDMYFK CGKVKLARRVFEEMSERDVVVWGAMLAGFAHNRLQREVLEYVRWMVDEGVKPNSVIMTIVIPVVGEVRARRLGQELHAYV VKTKSYSKQVPIQSALIDMYSKCGDLRSARQVFYSSAERNVVCWTALMSGYASIGKLEQALRSTIWMQQEGFRPDVVTIA TVLPICAQLRALEQGKQIHAYALKHWFLPNVSITSSLMVMYSKCGVIDYSARLFDVMEQRNVISWTAMIDSYMENGYLYE ALGVIRSMQLSKHRPDSVAISRMLSVCGELKLSKLGKEIHGQILRRDFSSVHFVSAELINMYGALGDVNKAKLVFDAVPA KGSMTWTALIRAHGYNELYQDAIDLFDHMRSNGSSPNHFTFEVILFICDRAGFVGDACRIFNLIPRYKIKASKEHFAIMV RLLTRCGKLEQAQRFVQMSSSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 130 | 130 | 2.3E-15 | ||
| ProSiteProfiles | 9 | 43 | 35 | 7.837 | ||
| PANTHER | 10 | 132 | 123 | 2.5E-100 | – | |
| ProSiteProfiles | 44 | 78 | 35 | 7.936 | ||
| ProSiteProfiles | 112 | 146 | 35 | 6.007 | ||
| PANTHER | 118 | 221 | 104 | 2.5E-100 | – | |
| Gene3D | 131 | 229 | 99 | 4.5E-17 | ||
| ProSiteProfiles | 147 | 177 | 31 | 9.043 | ||
| TIGRFAM | 152 | 180 | 29 | 1.6E-5 | ||
| Pfam | 152 | 178 | 27 | 8.7E-5 | ||
| ProSiteProfiles | 178 | 212 | 35 | 10.03 | ||
| Gene3D | 230 | 328 | 99 | 1.2E-14 | ||
| PANTHER | 231 | 338 | 108 | 2.5E-100 | – | |
| ProSiteProfiles | 249 | 279 | 31 | 6.116 | ||
| Pfam | 254 | 275 | 22 | 0.13 | ||
| Pfam | 279 | 323 | 45 | 1.9E-8 | ||
| ProSiteProfiles | 280 | 314 | 35 | 10.622 | ||
| ProSiteProfiles | 315 | 349 | 35 | 5.897 | ||
| Gene3D | 330 | 452 | 123 | 3.4E-17 | ||
| PANTHER | 332 | 439 | 108 | 2.5E-100 | – | |
| ProSiteProfiles | 350 | 380 | 31 | 6.818 | ||
| ProSiteProfiles | 381 | 415 | 35 | 10.019 | ||
| Pfam | 383 | 409 | 27 | 1.2E-4 | ||
| TIGRFAM | 383 | 417 | 35 | 1.8E-5 | ||
| ProSiteProfiles | 416 | 450 | 35 | 5.886 | ||
| PANTHER | 421 | 576 | 156 | 2.5E-100 | – | |
| Gene3D | 453 | 581 | 129 | 5.4E-20 | ||
| ProSiteProfiles | 482 | 516 | 35 | 10.117 | ||
| Pfam | 482 | 525 | 44 | 9.9E-9 | ||
| TIGRFAM | 485 | 517 | 33 | 1.8E-6 | ||
| ProSiteProfiles | 517 | 551 | 35 | 6.665 | ||
| ProSiteProfiles | 552 | 582 | 31 | 6.084 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0493300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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