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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0499200 |
| Transcript ID | LotjaGi1g1v0499200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G61360.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9M2C8|PP291_ARATH Pentatricopeptide repeat-containing protein At3g61360; TrEMBL-Plants: tr|K7MVV5|K7MVV5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0499200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:101505232..101508347) extracted from Lotus japonicus Gifu genome v1.2.
CCCAATCCCCAATTCTCAGCCAGATCCCTAGCTTTCCTAAAGCAAAAACCTTGGTGTGCTCTGTTTCGTTGGCGATCTCT GTGTTTCAAAGTTGAAAACACACACATGGTGTGTCTCTTCTCACCATCACAACAATGCTCACATTGCTTTTCAGGCTGAA ACAGAATCACACTCACATTCCCCACACGACAACCTCGTACCTATGGTGTTCCACATTCAACTTCTGCTCTCAATCATGTC TCACACCTGACACAGACACCATCACCAGAATCATCAACGACCACCCTTTCCCTGACCAACCCCTCCACCCCACTCTCCTC CGCCACCTCCCTCCTCCCACCATCTCCACTTCCTTAGTTGAAAACGTTCTTGGTCGCTTGTTCGCTTCCCATTCCAATGG CCTCAAGGCGCTGGAGTTTTTCAACTTCACCCTCCACCATTCCCAGTCCCCCCCATCTCATGTTTCATTCGAAATGACCC TCCACATCCTCACTAGGATGCGGTATTTCGATAAAGCTTGGATGTTGCTGCAAGAAACCGCCAGGACCCACCCTTCTTTG ATTACCCTTAAGGCAATGAGCATCATGCTTTCAAAAATTGCAAAATACCAATCTTTTGAGGATACCCTTGATGGGTTTAG GAGGATGGAGGAGGATGTGTTTGTTGGCAGGGAATTTGGCACTGATGAGTTCAATGTGCTTCTCAAAGCTTTTTGCAGTC AGAGGCAGATGAAGGAGGCTAGGTCCGTGTTCGGGAAGATGGTGTCGCGGTTTAGTCCTGACACCAAGAGCATGAACATT TTGCTCTTGGGTTTTAAAGAATCAGGTGATGTTACTTCTGTTGAGCTCTTCTATCATGAAATGGTTAAGCGTGGTTTTAG TCCTGATAATGTGACTTATAATATTAGGATCGATACTTACTGTAAGAAAGGTCGATTCGGTGATGGTTTGAGGCTTTTGG AGGAGATGGAACGTAGAAAATTTGTTCCTACCATCGAAACGATAACTACATTGATTCACGGAGCAGGGATTGTTCAAAAC GCAGGGAAGGCGCGGCAATTGTTCAACGAGATTCCTTCGCGAAACTTGGTTGTTGATACTGGTGTTTATAATGCTTTAAT TACTGCATTGCTTAGAAGTAAAGATATTGAATCTGCACTTTCCTTGATGGATGAGATGATTGAGAAACGCGTTGAGCTCG ACGGCGTAACTTATCATACGATGTTCTTAGGATTAATGAGGTCCACAGGAATTGAAGGTGTGAGTGAGCTTTACCAGAAG ATGGCTCAGAGGAATTTTGTTCCGCAAACAAGGACAGTTGTGATGCTGATGAAATATTTCTGTCAAAATTTTCGGCTAGA TTTAAGTCTTAGTTTATGGAATTACCTGGTGGAGAAAGGGTATTGTCCTCATGCTCATGCTTTAGATCTTTTGATCACTG GATTATGTTCAAGGGGTCAGGTGCATGAAGCATTTGAGTGCTCCAAACAAATGTTGGAGAGAGGAAGACATATGAGTGCT GCATCATTTCTAATGTTGGAGAGGTTTTTACTGCAATCTGGTGATATTGACAAGTTGAAGGAGCTTGACCAGATGATTAA AAATTTGCTAAGTGTATTACCACCATCTAAAGGTCATGCTACTGGTAGTTCTAACTTGAAAGTTAAAGTGTAGCATCATT TTAGTTTCAAATATAACTGTTGCAACCTGATTTTGGGGAAACTTTCCTGTGTATTATTAACCTGTATATTTCTTTAAATT AAGATTGAATGTTTTAGGGTCTGTTAATTTGGCATACATCAAAGAGAAGTCTTTGGAGACATTATGTTGATTAAAATCAT GTCTTCATGTTCTTGGAGGTCCTTTAGAATACCAATATTCTCACGCATGTACCCTTATCGTGGATATTTGAACCTTTACT CCTACAGATTGCTACTTCATTAGTTCAATATCTCAAGTGACAACATTTACATTTGACCAGGCCACCTAAATATTTTAAGT TTATCTGGAGGCAGTCCAGTCTATTTTGACCATTGGCAGTTGAATGCATGGTTTTTAATCAACGTCTGTGACAGTGAATT CAGCTGCAACATCAAGGTTTGGAAGGTTTCCGAACCCGCAACGCGACTGTGATTTCGGCCGGGACAGCTCTGCAATATGA AGGACTGCAACCATGATGTGACCGTTTATCGCAACCCAATTTAAAACCTTGGTTATTAATGGATGAAGTTAAATTCATCT CCTTCCGTGATCAGTGATGTTTTTCTGAGCAAGTGATTTAGAGTTCAATCTCATTGTTGATATTTTAATAATCAAATGGA GGTTTAGGCCAGTGTATTGATGCACTTCTGCTAGTCCTTGTTTCAAGGTAAAAGGGCATTAGGTAAAAGGGCATTTGTAT CAGATATATGCTTCAGCTTTCTACCAAGTAAGTTTTCTAGAGCTAAATTTTGTAATTTATTTCACGAATTGTCAAGATGG ACCACCCAATTCTATGTTTTTGCAGCACTAGTGGTTGTGACTGTCAAGGAGAAAGGTTCACATGATATTAAGTTTCTTTT GGAATTTAATTGAACTTTGTATGTACCACAGATTGACTGTGAAGCTGCCCTACACAATCGAATGAAGTTTGATTTCTCTT CTTTGGAAGGCATTTTTTCCTACATGGTGACTGACTAGAAATGATGTGCGAAGCACGACCGACCTTACTGAGTGCAATGT TCGTCGCAACCTGAGAAATAAGGAAAACTTGTTCCCTCATGAAGCCTGATCGTCACCATAAAGAGGAGTAGGGGTGAGAA CAATCCAGGGCACCGACGGGGGGCTTATCATGCCTCTTCCCGGCCTGGTATCTCAGGTTGTGACCAACATTGCATTAGTA AGGTTGGCCATGATACGCAGATCAGTCCCAATCAGTCTCCATGTAGGAACAAATGCAATGCTTTAATGTTTCCAGACATA GATTGAGTAGTTAATTGTGTGTTGCCAACTACCTAAAGACTAAGAAATCGTGGTGTGATTTCCTTATATTACCAAGTATC TGTTCAAAATATACCTGTAAAAGATCATGCTATGTTACCATTGCGCAAAACAGTTGAAATTACATTTTGAAATCCA
CDS sequence (LotjaGi1g1v0499200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCACATTGCTTTTCAGGCTGAAACAGAATCACACTCACATTCCCCACACGACAACCTCGTACCTATGGTGTTCCAC ATTCAACTTCTGCTCTCAATCATGTCTCACACCTGACACAGACACCATCACCAGAATCATCAACGACCACCCTTTCCCTG ACCAACCCCTCCACCCCACTCTCCTCCGCCACCTCCCTCCTCCCACCATCTCCACTTCCTTAGTTGAAAACGTTCTTGGT CGCTTGTTCGCTTCCCATTCCAATGGCCTCAAGGCGCTGGAGTTTTTCAACTTCACCCTCCACCATTCCCAGTCCCCCCC ATCTCATGTTTCATTCGAAATGACCCTCCACATCCTCACTAGGATGCGGTATTTCGATAAAGCTTGGATGTTGCTGCAAG AAACCGCCAGGACCCACCCTTCTTTGATTACCCTTAAGGCAATGAGCATCATGCTTTCAAAAATTGCAAAATACCAATCT TTTGAGGATACCCTTGATGGGTTTAGGAGGATGGAGGAGGATGTGTTTGTTGGCAGGGAATTTGGCACTGATGAGTTCAA TGTGCTTCTCAAAGCTTTTTGCAGTCAGAGGCAGATGAAGGAGGCTAGGTCCGTGTTCGGGAAGATGGTGTCGCGGTTTA GTCCTGACACCAAGAGCATGAACATTTTGCTCTTGGGTTTTAAAGAATCAGGTGATGTTACTTCTGTTGAGCTCTTCTAT CATGAAATGGTTAAGCGTGGTTTTAGTCCTGATAATGTGACTTATAATATTAGGATCGATACTTACTGTAAGAAAGGTCG ATTCGGTGATGGTTTGAGGCTTTTGGAGGAGATGGAACGTAGAAAATTTGTTCCTACCATCGAAACGATAACTACATTGA TTCACGGAGCAGGGATTGTTCAAAACGCAGGGAAGGCGCGGCAATTGTTCAACGAGATTCCTTCGCGAAACTTGGTTGTT GATACTGGTGTTTATAATGCTTTAATTACTGCATTGCTTAGAAGTAAAGATATTGAATCTGCACTTTCCTTGATGGATGA GATGATTGAGAAACGCGTTGAGCTCGACGGCGTAACTTATCATACGATGTTCTTAGGATTAATGAGGTCCACAGGAATTG AAGGTGTGAGTGAGCTTTACCAGAAGATGGCTCAGAGGAATTTTGTTCCGCAAACAAGGACAGTTGTGATGCTGATGAAA TATTTCTGTCAAAATTTTCGGCTAGATTTAAGTCTTAGTTTATGGAATTACCTGGTGGAGAAAGGGTATTGTCCTCATGC TCATGCTTTAGATCTTTTGATCACTGGATTATGTTCAAGGGGTCAGGTGCATGAAGCATTTGAGTGCTCCAAACAAATGT TGGAGAGAGGAAGACATATGAGTGCTGCATCATTTCTAATGTTGGAGAGGTTTTTACTGCAATCTGGTGATATTGACAAG TTGAAGGAGCTTGACCAGATGATTAAAAATTTGCTAAGTGTATTACCACCATCTAAAGGTCATGCTACTGGTAGTTCTAA CTTGAAAGTTAAAGTGTAG
Protein sequence (LotjaGi1g1v0499200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLTLLFRLKQNHTHIPHTTTSYLWCSTFNFCSQSCLTPDTDTITRIINDHPFPDQPLHPTLLRHLPPPTISTSLVENVLG RLFASHSNGLKALEFFNFTLHHSQSPPSHVSFEMTLHILTRMRYFDKAWMLLQETARTHPSLITLKAMSIMLSKIAKYQS FEDTLDGFRRMEEDVFVGREFGTDEFNVLLKAFCSQRQMKEARSVFGKMVSRFSPDTKSMNILLLGFKESGDVTSVELFY HEMVKRGFSPDNVTYNIRIDTYCKKGRFGDGLRLLEEMERRKFVPTIETITTLIHGAGIVQNAGKARQLFNEIPSRNLVV DTGVYNALITALLRSKDIESALSLMDEMIEKRVELDGVTYHTMFLGLMRSTGIEGVSELYQKMAQRNFVPQTRTVVMLMK YFCQNFRLDLSLSLWNYLVEKGYCPHAHALDLLITGLCSRGQVHEAFECSKQMLERGRHMSAASFLMLERFLLQSGDIDK LKELDQMIKNLLSVLPPSKGHATGSSNLKVKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 104 | 296 | 193 | 9.8E-68 | – | |
| ProSiteProfiles | 108 | 142 | 35 | 5.36 | ||
| ProSiteProfiles | 144 | 174 | 31 | 5.283 | ||
| Gene3D | 147 | 301 | 155 | 1.4E-28 | ||
| ProSiteProfiles | 182 | 212 | 31 | 8.572 | ||
| Pfam | 186 | 212 | 27 | 2.4E-4 | ||
| TIGRFAM | 186 | 212 | 27 | 4.9E-5 | ||
| ProSiteProfiles | 216 | 250 | 35 | 9.997 | ||
| Pfam | 219 | 248 | 30 | 0.37 | ||
| TIGRFAM | 220 | 251 | 32 | 4.5E-4 | ||
| Pfam | 250 | 296 | 47 | 5.4E-11 | ||
| ProSiteProfiles | 251 | 285 | 35 | 12.891 | ||
| TIGRFAM | 253 | 286 | 34 | 1.5E-9 | ||
| PANTHER | 262 | 458 | 197 | 9.8E-68 | – | |
| ProSiteProfiles | 286 | 320 | 35 | 6.522 | ||
| Gene3D | 302 | 409 | 108 | 6.3E-22 | ||
| ProSiteProfiles | 321 | 355 | 35 | 10.808 | ||
| Pfam | 321 | 368 | 48 | 4.2E-11 | ||
| TIGRFAM | 324 | 356 | 33 | 8.4E-7 | ||
| ProSiteProfiles | 356 | 390 | 35 | 8.955 | ||
| ProSiteProfiles | 391 | 425 | 35 | 7.761 | ||
| Gene3D | 418 | 489 | 72 | 4.1E-5 | ||
| ProSiteProfiles | 426 | 460 | 35 | 8.342 | ||
| TIGRFAM | 433 | 457 | 25 | 7.7E-4 | ||
| Pfam | 433 | 457 | 25 | 0.032 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0499200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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