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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0499600 |
| Transcript ID | LotjaGi1g1v0499600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT5G48050.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q14DL0|UBQLN_MOUSE Ubiquilin-like protein; TrEMBL-Plants: tr|A0A151RZ91|A0A151RZ91_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi1g1v0499600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:101528119..101532101) extracted from Lotus japonicus Gifu genome v1.2.
TGTATTTACTATGCTGCTGCATCATCTTTTGAGTAGTTATGACAGCTGACATATGCAGCTGTTTGTATTCTCCTATTTAT GTCAGCTGTTGGTATTCTCCTATTTATGTCAGCTGTATGTTACAGCTGTTGGCATTCTCCTGTTCTTCTATATAAGGATA TCACATCTTCTGTAACCACTCAGATTATCAATAATACATTTTCTGTTATATTTCTATTTCTCTCTTCTCTCTCTCATTGC TTCTCTAATTTTAACATGGTAATCAGAGCTTCAATCGGTCCTTGATACATGGCTGCTGCACCTGCTTCCGTTGTCAATGT TCTTGAGTCTCTGTCTCGTACTGCAACAATCAAGCTTGATGATTCGAATTTCTATTCTTGGCGTCAACAAGTTGAAGGTG CGATTCGATCGCATCAGCTTCATGATTTTCTGGTTGATCCAGAAATTCCACAACGTTTTCTGACTGAAGAGGATCGTGTA GCTGCGACTGAGAATCCAGCTTATACGACTTGGATTAAGCAAGATTCCATGGTGTTTACATGGCTCTTGACGACTCTATC TCCGTTTGTTCTTCCAACGGTGATCAACTGCGAGAGATCATCGCAGGTTTGGCGTGAGATCCTTGACTTTTTTGAGAATC AGTGTCGCGCACAGTCTGCTCAGCTCAGATCTGAGCTGAAGAACATAACCAAAGGTTCGAAGTCGATCACTGAATATCTT CGACGCATCAAGACGATCGTCAACACTCTGGTTTCCATTGGTGAACCCGTAAGTTTTCGCGATCACCTTGAAGCGATTTT TGATGGTTTACCTGAAGATTATAGTGCTTTAAGCACGATTATCTTCACTCATGCTTCTTCGAGCACGATTTCTGAGGTCG AAGCGATGATCATTACTCATGATGCTCGCCTGGAACGATCACGGAAACGTAGCCTTAGCGATTCTACTGCTTCTGCGTTG CTTGCGCATACACATGCGTTCGCATCGGTTCCTGCTCCGATTTCACCTCAGATCTCCCGAACGCCGCCACCTTCTGTGGA TTTGACGCCGTCTCAGGCCAATTATGCTGCTGAATTTCGTGGTGGACGTGACTATCGGAATGATCAACAACGTCCAAATT ATCGTGATTCTGGTGACAATCGTGATACCTATCATGACCAGAATGATTCACGTGGACCAGGCGATGGCCGTGGTGGCTAT CCTGCTGGTGGACGCGGTGGTGGACGCGGCCGTGGGCGCGGCCGTAATTTGCAGTGTCAGATTTGTCAGAAGTGGGGACA TGATGCGAGTGTCTGCTACCATCGCGCCGTTGGAGGTGGTTCTGTACAGAATGGCACCTTTACTAATATGCCTAGTCCTG CACCTTTTGGAGCCTTTCCTCCTATGCCTCTTGGTTCTGCCACTTTTGGCTCTTCCTCACCGTCTTTTTATGCTTCTGGA CCTGCTCCGTGGAATTACTTTGGCTCTTCCGCAGGACCTTACAATGGTGCTTACCCTCCAGGTTCTCAGTTTCCTGCTTT TACTGGTGGTTCTCAATATTCTGCACCTGGAGCTGTTTTTGGTCCAGTATCATCTTCTTGGAATTCACCTCGGCCCTCAC CTCCATCTTATCCGGGCCTTCTTGGCTCTCAGCCTCGCTCTCCTGCTCATGCTATGCTTGCTGGTCCTCTGCACCATGCT TCTTCTTCCGCATCTCAGCGTCCTGACAAGCCTACTTTGTGGTATCCCGATTCTGGTGCCACTCACCATGTTACCAATGC TGCTGGAAATTTTTCAGACACTTCTTCATTCACTGGAACTGAGCAGATTTTGATGGGCAATGGCCAAGGTTTGCCAATTC ACTCTATTGGTTCTTGCACCATTCCCTCACCATATGATTCACATACTGTTCTCACTCTTAGTCAACTGCTTCTAGTTCCT TCTATCACCAAAAACCTTGTCAGTGTTAGTAGGTTTGTCAAGGATAACAATGTTTATTTTGAGTTTCACGCTTCTTTCTG TCTTGTTAAATCACAGGAAACATCTAAAGTGTTGCTTCGTGGAAGTGTTGGTTCTGATGGCTTATACACCTTTGATGATG TCAACGCTGCTAGTGTCTCTTCTAGTTGTTCTAAATCTGATTTGTCTACTAGTACTCCTTCTGTTTTATCTACAGTGTAT CCAGGTACTGGAAAATCACAGAATATGTCTTCTGTTTCCAGTTTAGGTAATTCCAGCTATGACTTGTGGCATTGTAGACT AGGTCATCCTCATCATGAGGTCTTGAAAACTACTTTACAACTATGTAATGTTCCTTTGCCTAATAAAACTTCTTTTGCCA TGTGTGTTGGTTGTTGTATGGGAAAGGCACATAGGTTGCCCTCTTCTTCTTCTTCTACTGTTTATACTCTGCCTTTTGAG TTGGTTTATGCTGATTTATGGGGACCAGCTTCCATAGAATCCTTTGCTGGTTTTTCATATTTTCTTACTTGTGTTGATGC TTGCACACGATACACTTGGATCTATCCCTTAAAACACAAGTCTGACACCTTTCAGACTTTTAAAAACTTCAAAGCATTGG TTGAACTGCAGTTTCAATGTAAGCTTAAGAGTGTGCAAACTGATGGAGGAGGAGAGTTTCGATCCTTGATTCCCTATTTT ACTCAGTTAGGGGTAGTTCATCGTGTGACCTGTCCTCACACACACCATCAAAATGGGAGTGTGGAGAGGAAACATCGCCA TATTGTTGAAACGGGACTTGCTTTGCTTGCTTATGCCAAAATGTCATTGCACTTTTGGGATCACGCTTTTCTTACAGCTA CCTATCTTATCAATCGGATGCCTACTTCTGTTTTAGGAGGACAAAGTCCTTATTTTCAGTTGTATGGTTCTCAACCTGAT TACAAGTTCCTCAAGGTATTTGGGTCAGCTTGTTATCCTTTTCTGCGCCCGTATACCAATAACAAGTTGGCATATAGGTC CCAAGAGTGTGTATTTTTGGGCTACTCTTCTCAACACAAAGGATACAAGTGCTTGGATGCTCAAGGCAGAGTCTATGTCT CTAAAGATGTGTTGTTTAATGAGCATAGGTTCCCTTATGTTGAAATGTTTCCTGATTCTGCTACAGAAACAACTTCTCCA GAATCATTTTGTTTGCTGATTCCTCTTGCTGCTGCTCCAAATATTATTTCTAATGCTTCTCCAGCTGCTGAGCCTGCTTC TCCTGCTATGACAATGCATTCTGCGGGTTCTGATTCTTCACCCTCTGGCATCAGCTGCTACACCTGATAATGTTCAAGCT GTCATCCCTGTTAATGCTCATCCAATGCTCACCAGAGCAAAGAATGGCATTGTCAAGCCTCGCTTGTTTCCTTCTGTCTT GTTGACAGAAGTAGAGCCTACTACAGTCAAACAAGCTCTCAAGAGCAGTAAGTGGTTCAGTGCAATGCAGCAAGAGTATG AGGCATTGATGACTAATAAGACCTGGACTCTTATGTCACTTCCAGCTGGAAGAAAGCCTATTGGTTGTAAGTGGATTTTC AGGATTAAAGAAAATCCAGATGGAACAGTGAATAAGTACAAGGCTCGACTTGTAGCTAGAGGGTTCAATCAAGTGCATGG CTTTGACTATTCTGAAACATTTTCTCCAGTGGTCAAACCTATAACTGTGAGGTTGATTCTATCTCTTGCTATTTCCAAAG GGTGGCCTCTTCAACAGTTAGATGTGAATAATGCCTTTCTCAATGGGAACTTAGAAGAAGAGGTTTACATGGTTCAGCCA CCTGGATTTGAACAGGGTGATAAGTCCCTTGTGTGTAAGCTTGACAAAGCTTTGTATGGCCTAAAACAAGCTCCTCGAGC CTGGTTTCACAGGTTGACTGCCACTCTTGTTCAATTAGGGTTCAAGGCTAGTAAGTGTGATCCCTCCTTGTTCACTTTGT CTTCACCAACTTGCTGCACATATGTTCTAGTATATGTGGACGATATTATTATCACAGGAGGTT
CDS sequence (LotjaGi1g1v0499600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCTGCACCTGCTTCCGTTGTCAATGTTCTTGAGTCTCTGTCTCGTACTGCAACAATCAAGCTTGATGATTCGAA TTTCTATTCTTGGCGTCAACAAGTTGAAGGTGCGATTCGATCGCATCAGCTTCATGATTTTCTGGTTGATCCAGAAATTC CACAACGTTTTCTGACTGAAGAGGATCGTGTAGCTGCGACTGAGAATCCAGCTTATACGACTTGGATTAAGCAAGATTCC ATGGTGTTTACATGGCTCTTGACGACTCTATCTCCGTTTGTTCTTCCAACGGTGATCAACTGCGAGAGATCATCGCAGGT TTGGCGTGAGATCCTTGACTTTTTTGAGAATCAGTGTCGCGCACAGTCTGCTCAGCTCAGATCTGAGCTGAAGAACATAA CCAAAGGTTCGAAGTCGATCACTGAATATCTTCGACGCATCAAGACGATCGTCAACACTCTGGTTTCCATTGGTGAACCC GTAAGTTTTCGCGATCACCTTGAAGCGATTTTTGATGGTTTACCTGAAGATTATAGTGCTTTAAGCACGATTATCTTCAC TCATGCTTCTTCGAGCACGATTTCTGAGGTCGAAGCGATGATCATTACTCATGATGCTCGCCTGGAACGATCACGGAAAC GTAGCCTTAGCGATTCTACTGCTTCTGCGTTGCTTGCGCATACACATGCGTTCGCATCGGTTCCTGCTCCGATTTCACCT CAGATCTCCCGAACGCCGCCACCTTCTGTGGATTTGACGCCGTCTCAGGCCAATTATGCTGCTGAATTTCGTGGTGGACG TGACTATCGGAATGATCAACAACGTCCAAATTATCGTGATTCTGGTGACAATCGTGATACCTATCATGACCAGAATGATT CACGTGGACCAGGCGATGGCCGTGGTGGCTATCCTGCTGGTGGACGCGGTGGTGGACGCGGCCGTGGGCGCGGCCGTAAT TTGCAGTGTCAGATTTGTCAGAAGTGGGGACATGATGCGAGTGTCTGCTACCATCGCGCCGTTGGAGGTGGTTCTGTACA GAATGGCACCTTTACTAATATGCCTAGTCCTGCACCTTTTGGAGCCTTTCCTCCTATGCCTCTTGGTTCTGCCACTTTTG GCTCTTCCTCACCGTCTTTTTATGCTTCTGGACCTGCTCCGTGGAATTACTTTGGCTCTTCCGCAGGACCTTACAATGGT GCTTACCCTCCAGGTTCTCAGTTTCCTGCTTTTACTGGTGGTTCTCAATATTCTGCACCTGGAGCTGTTTTTGGTCCAGT ATCATCTTCTTGGAATTCACCTCGGCCCTCACCTCCATCTTATCCGGGCCTTCTTGGCTCTCAGCCTCGCTCTCCTGCTC ATGCTATGCTTGCTGGTCCTCTGCACCATGCTTCTTCTTCCGCATCTCAGCGTCCTGACAAGCCTACTTTGTGGTATCCC GATTCTGGTGCCACTCACCATGTTACCAATGCTGCTGGAAATTTTTCAGACACTTCTTCATTCACTGGAACTGAGCAGAT TTTGATGGGCAATGGCCAAGGAAACATCTAA
Protein sequence (LotjaGi1g1v0499600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAAPASVVNVLESLSRTATIKLDDSNFYSWRQQVEGAIRSHQLHDFLVDPEIPQRFLTEEDRVAATENPAYTTWIKQDS MVFTWLLTTLSPFVLPTVINCERSSQVWREILDFFENQCRAQSAQLRSELKNITKGSKSITEYLRRIKTIVNTLVSIGEP VSFRDHLEAIFDGLPEDYSALSTIIFTHASSSTISEVEAMIITHDARLERSRKRSLSDSTASALLAHTHAFASVPAPISP QISRTPPPSVDLTPSQANYAAEFRGGRDYRNDQQRPNYRDSGDNRDTYHDQNDSRGPGDGRGGYPAGGRGGGRGRGRGRN LQCQICQKWGHDASVCYHRAVGGGSVQNGTFTNMPSPAPFGAFPPMPLGSATFGSSSPSFYASGPAPWNYFGSSAGPYNG AYPPGSQFPAFTGGSQYSAPGAVFGPVSSSWNSPRPSPPSYPGLLGSQPRSPAHAMLAGPLHHASSSASQRPDKPTLWYP DSGATHHVTNAAGNFSDTSSFTGTEQILMGNGQGNI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 14 | 500 | 487 | 5.1E-72 | – | |
| PANTHER | 14 | 500 | 487 | 5.1E-72 | – | |
| Pfam | 75 | 209 | 135 | 4.4E-17 | – | |
| MobiDBLite | 263 | 318 | 56 | - | – | |
| MobiDBLite | 265 | 296 | 32 | - | – | |
| MobiDBLite | 427 | 482 | 56 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0499600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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