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LotjaGi1g1v0501900.1

Overview

Field Value
Gene ID LotjaGi1g1v0501900
Transcript ID LotjaGi1g1v0501900.1
Lotus japonicus genome version Gifu v1.2
Description Homeobox protein; TAIR: AT3G01220.1 homeobox protein 20; Swiss-Prot: sp|Q8LAT0|ATB20_ARATH Homeobox-leucine zipper protein ATHB-20; TrEMBL-Plants: tr|I1L5Z0|I1L5Z0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0501900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:101875220..101878518) extracted from Lotus japonicus Gifu genome v1.2.

ATTTTCTCTCACTTTATGTCTGCGTAGCCTAAAAATTGTTGTCCTTGTGTCTCTGCATCCATCATCATCACCCTATCTGA AACTTTTGTCACCATAAGAGTGAGAGCCAAACCCCAGTGATCATTAACACCCCCTTAAATTACAACAATGAGATAATCAG AGAGAGAGAGAGAGAGAGAGTGACCAATTTGCATGAATGATATCATAGTTCTTCTACCATGGACTTCCCATCATCTCACC CTTTCATGTTTAACACCACTGAAGATCACGACCACCACCTACCTTCAATCTCTCTCAACAACTTTTCCTCTTTGCCACCC CAACACTTTCAAGGTATTACACTCTTTTTGTCACAAAGGGTATCAAATTCCTCCCCTTATGCTACCTTTTAATATTATTT GACAAGAAAAAAAAGGGTATTTAATTCAAACAATCAAACTTAACAAGTTTTTGATAAATGACAACACTATTCTGTTTTAT GTCTTGTGTTTTTCCAGGGGGTGCACCTTTTCTGTTGAAGCGATCCATGTCATTTTCCGGCACCGAAAACAAGTGCAATA AAGTTCATGGAGATCAAGATGAGTTATCTGATGATGGATTGTACCAGAGTGGGGAGAAGAAAAAGAGGCTGAACTTGGAG CAGGTGAAGGCCCTTGAGAAGAGTTTTGAGTTGGGGAACAAACTTGAGGCAGAAAGGAAAGTGCAGCTAGCTAAGGCTCT TGGGTTGAAGCCAAGACAGATTGCAATATGGTTTCAGAATAGGAGGGCAAGGTGGAAAACAAAGCACTTGGAGAAGGAAT TTGTTGTCCTCAAGAAGCCGTTTGATGCAGCCAAGGCTGACAATGATGAACTTAAACTTCAGAATCAGAAGCTATACACA GAGGTAATTAATATTTATACGTTTGGAAATCATTCGATAATTGATTCTTGAGTAAAAGACAATTATGAGTAGAAATACAT GTATGTGAGTAGCTTCTCAATTTTAAAATTGATTTTGAGACCGGAGAAATTGATCCAAACACATTGTATGTTGATAATTG ATATGTTGTCGCTATGGTTCATGTTGGGTTTAATTTGTGTATGATACATTGTGTTATAATGTCACATGTTAAGAATTGCT TATTGTCTAAAAACTTAGCTTTTAGCATCGTTCTTGCTCATATCATATTCTGTGCATCTTTGGAAATTGATTCTAATAGG TTTCAGAATTGATTATGGGGAAAGAGAAGTTGATCTAAATGTACTAATAGTATTGGATCACTTAGGGCCTGTTTGATAAC TGTTTCCAAAACAGTTTTCAGTTTTTAAAAACTGAAAACTTGTTTGGTAAGACCTGTTTTCAAAAACAGTTTTTGAAAAC AGTTCTCATTTTCAGTTTTTAAAACTAAAAAACCAAAACAGGTAAAAGATGTTTTTAGTTTCAGTTTTTAGTTTTCAGAT ATCAGTTTTCTAAATGTTCAAAAACATGTCATTCAAACTGTTTTCTTCTTCTGAAAACTGTTTTTAAGAATTGTTTCTGA AAACTGTTTTAAAAACTGAAAACTAAAACTGCTATCAAACAGGCCCTTAGTTTTCCATCATCTAGTTCCTTTATAGATCA AAATAATAAAGTTTTGGGAGAAATGGATATCTTGATGATATATATTTGAGGAAAGCACGGACGCTTAAGCTTTTAGAGGT TGATATAATATATAGTCTTGGATCACTGAATTTTCCTTACTCTAGTGCCGTTTTTGATCAAAATCATAAGGTTTGGAAGA AATGAATACATATCTGGGGATTGGTATTATTAAACTGGTGTTTCTGAATCTTGATCTTGATTCATGTATTCAATATTCAT TAAATGACCATTTGTTTATATATATGTGGAGCATATGATAGAAGAGTATGATTCCAGTTCAAGAAAAGGGTTTTCTAATT CCTCTATGTTAATTGCTTTTTTAATTTTAAATTTGTTCCTCTGTCTTTTCTTCCCTGACTTGCTGGAATTGAATTTATTT TATTCTGTTCCTACTACTCATTGTTCTATTTCTATACGAAGTTTCATTGCTCTCTCATTTGTACACTAATGGCTCTAAAT TGGTATTTTCATGAAAGAGAGCAAGCACACCCTTGTTTATTTTACTTCTCAGAAGAGGAAAACCTTTTACTTCTTTGAGT TAAGTACTTGTTATTCACTTTTGAAACTCCATTTCAATTCTTATTGTAATTGTCATTACTCATTCTTATGAAGAGTCACT GTCACTTAAGACCCCATAACTGCTAATTAGTAATGTTTTTCCATTAGATCCGATTAATGCACAGGAAGCAAAAGACACGA ATATGATTTTTGGATCAGCTTCTCTTTAATCATAATCAAACATGAAAATACTTTTTCGCATAATTGATTATGACTTTAGA ATTGACTGTAGAATGATTTTCAGCACCCATGAAATGGCTAGATACTTCATACTAGAGTAACCTGGTCTTGTTTAACATTT TTTTACTGTATGGTTTTTGCAGTTACAAGCTTTGAAAAGAAGGGATTGGTGTGAAGCTCGAACAATCAGCTTTAAGAAAG AAACTGAGGGTACTTGGAGCAATGGAAGTGAAAACAGCTCAGACATAAATTTAGATCTCTCAAGAACATCAATTTCAAAT AGTCCTGTATCTCCCCAGAACAATAAAAACCTTATGACCACTTCAATAAAAACCCCCAGCATAACCCAACTCCTTCAATT CTCATCAAGGCCAAATCTCCAAGATGAAGGCTTGTGCAACATGTTTCACAACATTGATGAGCACCAGAACTTTTGGCCCT AGCCTGCGCAGCACCATTTTCATTGACCTTATTAATGACTTTTCAACAACAATGTTCAATGATATGAGGGCCAAAGTTAA CAAAAATGATTGGTAAACACAAACAGTGGCGACACCTCGACACCTCGATCGCCACAAACTGCAGAGTTTAAATAAACTGT GCAGTTTGTGGCGAATTTTGGCCACCACAAACTTCCGGTGTCGAGGTGTTCTCCATTGTTTGTGAGTTTATTAATCACCA TTGCAAATTTAATTATGCATTATACAACCTTTTTATATCAGCTTTTCAATTCATGTTGTAGAAAACAAATTAATCTTCTT CAGGCATGAGGAGTTGGTGGACTTTTGAGTAGTGCAATTTCTTCTCCAATGCAATTTATTGTATTCCATTGTATAAAAGA ATGTTTTTGTTGGCTTTAGATAAAAAGAGTTACAAGTTCTTCTCTGTGGTACAAGTTCACCATAAGTGGCCTTTTAGCCT TTAAAATTTTAAATACAGT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0501900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACTTCCCATCATCTCACCCTTTCATGTTTAACACCACTGAAGATCACGACCACCACCTACCTTCAATCTCTCTCAA CAACTTTTCCTCTTTGCCACCCCAACACTTTCAAGGGGGTGCACCTTTTCTGTTGAAGCGATCCATGTCATTTTCCGGCA CCGAAAACAAGTGCAATAAAGTTCATGGAGATCAAGATGAGTTATCTGATGATGGATTGTACCAGAGTGGGGAGAAGAAA AAGAGGCTGAACTTGGAGCAGGTGAAGGCCCTTGAGAAGAGTTTTGAGTTGGGGAACAAACTTGAGGCAGAAAGGAAAGT GCAGCTAGCTAAGGCTCTTGGGTTGAAGCCAAGACAGATTGCAATATGGTTTCAGAATAGGAGGGCAAGGTGGAAAACAA AGCACTTGGAGAAGGAATTTGTTGTCCTCAAGAAGCCGTTTGATGCAGCCAAGGCTGACAATGATGAACTTAAACTTCAG AATCAGAAGCTATACACAGAGTTACAAGCTTTGAAAAGAAGGGATTGGTGTGAAGCTCGAACAATCAGCTTTAAGAAAGA AACTGAGGGTACTTGGAGCAATGGAAGTGAAAACAGCTCAGACATAAATTTAGATCTCTCAAGAACATCAATTTCAAATA GTCCTGTATCTCCCCAGAACAATAAAAACCTTATGACCACTTCAATAAAAACCCCCAGCATAACCCAACTCCTTCAATTC TCATCAAGGCCAAATCTCCAAGATGAAGGCTTGTGCAACATGTTTCACAACATTGATGAGCACCAGAACTTTTGGCCCTA G
Download CDS Sequence

Protein sequence (LotjaGi1g1v0501900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDFPSSHPFMFNTTEDHDHHLPSISLNNFSSLPPQHFQGGAPFLLKRSMSFSGTENKCNKVHGDQDELSDDGLYQSGEKK KRLNLEQVKALEKSFELGNKLEAERKVQLAKALGLKPRQIAIWFQNRRARWKTKHLEKEFVVLKKPFDAAKADNDELKLQ NQKLYTELQALKRRDWCEARTISFKKETEGTWSNGSENSSDINLDLSRTSISNSPVSPQNNKNLMTTSIKTPSITQLLQF SSRPNLQDEGLCNMFHNIDEHQNFWP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24326:SF538
4 266 263 1.4E-107 –
PANTHER
PTHR24326
4 266 263 1.4E-107 –
Gene3D
G3DSA:1.10.10.60
46 146 101 1.4E-17 –
SUPERFAMILY
SSF46689
72 135 64 1.24E-18
IPR009057
ProSiteProfiles
PS50071
74 134 61 16.989
IPR001356
SMART
SM00389
77 138 62 2.1E-17
IPR001356
CDD
cd00086
79 135 57 3.69934E-15
IPR001356
Pfam
PF00046
80 132 53 7.7E-16
IPR001356
PRINTS
PR00031
105 114 10 1.0E-5
IPR000047
ProSitePatterns
PS00027
109 132 24 -
IPR017970
PRINTS
PR00031
114 130 17 1.0E-5
IPR000047
Pfam
PF02183
134 173 40 9.6E-9
IPR003106
Coils
Coil
147 174 28 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0501900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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