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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0502400 |
| Transcript ID | LotjaGi1g1v0502400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb factor; TAIR: AT3G47600.1 myb domain protein 94; Swiss-Prot: sp|P81392|MYB06_ANTMA Myb-related protein 306; TrEMBL-Plants: tr|C6T8I3|C6T8I3_SOYBN MYB/HD-like transcription factor; Found in the gene: LotjaGi1g1v0502400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:101943222..101945205) extracted from Lotus japonicus Gifu genome v1.2.
CACCCCACCATACCCTTACCCTTCTTTTTTTGCTATATATGTACACCAAACAAAGGTTAGTCTTGGACACTTGCCTTGCC TTAGAACCTATTAAGTCAAGAGAGATAGAGATAAAGAAAAAGAGAAGAGTTCACTCACTGAGAGGAGAGGAAGACCTATT TTTCCTTGAGAGAAAGGGCTAAGCTAGAAAGTTAGAAAACAAGTGTATATAGTCGGTGACATAAAGCAAAAGGAACAAGG GGACATGGGAAGACCACCTTGTTGTGACAAAGAAGGTGTCAAGAAAGGGCCTTGGACTCCTGAAGAAGATATCATTCTGG TCACTTATATTCAGGAACATGGTCCTGGCAATTGGAGGTCTGTTCCTACCAAAACAGGTTAACCCTCCACTCTTTTTGTT GTTACTTATTCTTTGTTCTTCTGTCTCATGGATCTTAAATTCTAATCCAAAAGCACTGTGATCTGAATTAATTGATTTAT TCATTTTGTGGTTTTCAGGGTTGTCAAGATGCAGCAAGAGTTGCAGGCTTAGATGGACAAATTACCTGAGGCCAGGAATC AAAAGGGGTAACTTCACAGAACAAGAGGAGAAGATGATAATCCACCTTCAAGATCTTCTAGGAAACAGGTATATAGTAAA TCAATCTTCGAGCACCTTACATGTTGAAATGAGTTTTGAAGTTTCAGTACATGTTTACAATTGATTTTAAAGTTAAAATC AATTATGGGAAAATTATGTACGGCTGTGAGTAGCTTCTAGGCATCATATAAAAGTGATAATGAAGAAAAATAAGCTAATT CAAACATGATTTGATTGTTAAATGGTTTGATTAGTTAATTTGTGTAGTTCTACTGTGAGTATCTTTTAGGCACCAGATCG TTAAGAAAAATAAATTGATCCAACACTATCATTGTTAACTATTTTGCTTAGTTAATTTGGGAAGTTCTTTTATTAGATTC ACATATCTTAATTAATTAACACTGGATCACATTGACTATGCTACAGATGGGCTGCAATAGCTTCATACCTTCCACAAAGA ACAGATAATGACATAAAAAACTATTGGAACACCCATTTGAAAAAGAAGCTGAAAAAATTGCAAGCAGGTTCTGAAGGAAA CTTGGGAGAAGGGTTTTCAGCATCATCACCACAAAGGATTTCAAGAGGCCAGTGGGAAAGGAGGCTCCAAACTGACATCC AAATGGCCAAGATAGCTCTCAGTGAAGCTCTTTCACCACAGAAACCATCTTCATCTAATAATAACAACAACCCTTCAAAT AGTAGCAGCACTTTGTCCTCCACAAAACCCACCCAATCTCCATCATGCTACGCTTCAAGCGCCGACAACATAGCGCGTTT GTTGAAAGGGTGGATGAAGAATCCACCAAAGAAAAGGTCCTCAAGGACTAACTCAGTTGCCACACAAAACTCCTTCAATT ACAACTTGAATGCTGCAGGGACTGACACTGCTTCTTCTAGTGGAGCAAAAGGAATTAGCAGTACTAGTGCTGAATTGTCT GAAACATTTGAGTCCTTGTTTGGTTTTGAGTCTTTGGAGTCTCCAAATTCTGATCAGTTTTCTCCATCTAATTTGTCACC TGAAAGAAAGCCAGATGTTAATGTTATTGGTCCAGAAATGCCCTTGTCTTTGCTAGAGAAGTGGCTTCTTGATGAGTGCA GTGTTAATCCAGAGAAAATCTTAGGCTTTGGTGATGATGATAAGATTTTTTAGATTGGAACTTTTGCAATTTTTCTTTCA TAAGTTCAAGGAAAAGGTTCATAGACAAGTTTTCAAATGTATTGGTGCTAGTATAGGTGTGTATATTTTTCACTATTAAT CAACATAATTATCACACTATTAGAGATATATACTGAGTACCTTGCTGCAGGAAAAGCTTGCTTATGTAAATTTCCTACGA TGAGATCTTTCGTTTTGAATTGATTTTTTCATTCTTCTTCCTAGTATAGTGATTGATGTTCCGG
CDS sequence (LotjaGi1g1v0502400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGACCACCTTGTTGTGACAAAGAAGGTGTCAAGAAAGGGCCTTGGACTCCTGAAGAAGATATCATTCTGGTCAC TTATATTCAGGAACATGGTCCTGGCAATTGGAGGTCTGTTCCTACCAAAACAGGGTTGTCAAGATGCAGCAAGAGTTGCA GGCTTAGATGGACAAATTACCTGAGGCCAGGAATCAAAAGGGGTAACTTCACAGAACAAGAGGAGAAGATGATAATCCAC CTTCAAGATCTTCTAGGAAACAGATGGGCTGCAATAGCTTCATACCTTCCACAAAGAACAGATAATGACATAAAAAACTA TTGGAACACCCATTTGAAAAAGAAGCTGAAAAAATTGCAAGCAGGTTCTGAAGGAAACTTGGGAGAAGGGTTTTCAGCAT CATCACCACAAAGGATTTCAAGAGGCCAGTGGGAAAGGAGGCTCCAAACTGACATCCAAATGGCCAAGATAGCTCTCAGT GAAGCTCTTTCACCACAGAAACCATCTTCATCTAATAATAACAACAACCCTTCAAATAGTAGCAGCACTTTGTCCTCCAC AAAACCCACCCAATCTCCATCATGCTACGCTTCAAGCGCCGACAACATAGCGCGTTTGTTGAAAGGGTGGATGAAGAATC CACCAAAGAAAAGGTCCTCAAGGACTAACTCAGTTGCCACACAAAACTCCTTCAATTACAACTTGAATGCTGCAGGGACT GACACTGCTTCTTCTAGTGGAGCAAAAGGAATTAGCAGTACTAGTGCTGAATTGTCTGAAACATTTGAGTCCTTGTTTGG TTTTGAGTCTTTGGAGTCTCCAAATTCTGATCAGTTTTCTCCATCTAATTTGTCACCTGAAAGAAAGCCAGATGTTAATG TTATTGGTCCAGAAATGCCCTTGTCTTTGCTAGAGAAGTGGCTTCTTGATGAGTGCAGTGTTAATCCAGAGAAAATCTTA GGCTTTGGTGATGATGATAAGATTTTTTAG
Protein sequence (LotjaGi1g1v0502400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRPPCCDKEGVKKGPWTPEEDIILVTYIQEHGPGNWRSVPTKTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIH LQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQAGSEGNLGEGFSASSPQRISRGQWERRLQTDIQMAKIALS EALSPQKPSSSNNNNNPSNSSSTLSSTKPTQSPSCYASSADNIARLLKGWMKNPPKKRSSRTNSVATQNSFNYNLNAAGT DTASSSGAKGISSTSAELSETFESLFGFESLESPNSDQFSPSNLSPERKPDVNVIGPEMPLSLLEKWLLDECSVNPEKIL GFGDDDKIF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 304 | 302 | 5.6E-128 | – | |
| PANTHER | 3 | 304 | 302 | 5.6E-128 | ||
| ProSiteProfiles | 9 | 65 | 57 | 26.221 | ||
| SUPERFAMILY | 11 | 108 | 98 | 2.49E-31 | ||
| Gene3D | 12 | 67 | 56 | 2.4E-19 | – | |
| SMART | 13 | 63 | 51 | 3.4E-15 | ||
| Pfam | 14 | 61 | 48 | 1.5E-15 | ||
| CDD | 16 | 61 | 46 | 5.58139E-12 | ||
| SMART | 66 | 114 | 49 | 2.9E-15 | ||
| ProSiteProfiles | 66 | 116 | 51 | 20.36 | ||
| Pfam | 67 | 112 | 46 | 3.4E-14 | ||
| CDD | 69 | 111 | 43 | 8.1407E-11 | ||
| Gene3D | 69 | 127 | 59 | 1.3E-19 | – | |
| MobiDBLite | 162 | 196 | 35 | - | – | |
| MobiDBLite | 163 | 196 | 34 | - | – | |
| MobiDBLite | 272 | 287 | 16 | - | – | |
| MobiDBLite | 272 | 291 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0502400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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