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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0502900 |
| Transcript ID | LotjaGi1g1v0502900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/FYVE/PHD zinc finger superfamily protein; TAIR: AT2G01275.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|O60337|MARH6_HUMAN E3 ubiquitin-protein ligase MARCH6; TrEMBL-Plants: tr|K7MUH1|K7MUH1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0502900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102058580..102062596) extracted from Lotus japonicus Gifu genome v1.2.
CCTCAACCGGAATTTAGTGCTGACATGCCACATACCTGACTATGTGTAAGCAGATAGCTCACACAGAGTAACCAAATAAA CATAGAAAAAGAAAAAAAGCAGTGATGATGAAATAAAAGAAAACCCCAGTCGGTGAGGCTTTACTGCTTGCTCTTTCAGT TTCATTTCCATCAAGCTTTTTCTGCTAATAATCACTGATTTCAGTTAACTTTTGATTTGAAAGCAGAAAAAACCAAGCAG GGTCATGAGGAAATGGTGCTTCCAGCTCCCCTGGATAGTACTGCCAAAACCCACCTCTTCTATGTGGCATCAGGGCATCA ATTCAAAGACTCAATGTCAGCCAAATATTGAGCCAGATGGGATCAGAACACCTGGACCCTACTTTAATCTGCAATGTAAT CTCAGTTTCTGATAAGAAACATCCTCTGATGTGTTTTAATCACATCTCAGTTACTAGTATAAATAGGTGTATGGTCCAGC TCATGCTTAGAACAGAGAGCTCAGGCACAAATTAAAGAGCAATAGAGACAGAGACAGTGATCCCAGAAACTCTGAGTAAA ATATTTTTTCTCTTTGCAGTCTTTTTCTTTCTCAATAATAATTGTTTTCTGATTCTGTCAACAATAGTCAAATAGTGGTT CAGTCTCCTTCTCTCCTAATTGACTAGAATGTTTAGTTTTCATTTCAGAACTGATCACTTGTGGCTTTCTAAAACACGTC TTCACTATTTTTTATATTCTTGGGTTTACATGCAGTTTTTTTCTTTTTTCTGGATTTACTTTTGATCTATAGATTCCTGA TCATGCATGCATGGAAAACTCATGACTTTTGAAGCTGTATTTTCTTTTAATTAAGTTTGAAGATTTATTCGAACGTGGAT GTTCTTCTTTCTCATGATCCAAGATTACTTGCTTGTTTATGCATGTAAAATGGTGAAGATCTGAGCAGTGCTTATGAAGC TTTCTACAAACTCTTTTCTTTTCTTTCCTTTCTTCTCACTTTTCAATTTCTAGACCATGCTTTCATGCACATGATCTGCA TCCTAGAGACTGTTTGTATACTTTCTCACAGAGGTATAACGGGACAAATGGGTTTTTGCTGTGTTTTCTAGCTTCATTTG TTACTTATTATTTCATCAGAATCATCATGCATGTTTGTTTCCATTATAGAAATGGAGGAATGCAAAAAGGAAGATCAAGT CACTGTGATCACCCCTAAGGAAGTTTTCGTAACCCCAGTTCAGGAAACTTCAGCTACCAACGACCACATTATTGCTGTCC CCATTGAAGAACTGGGTGTTATCATTGCTGAAAAGGATGATGAGAAGCCTGAAACTAATAATGATGATTGCTGCCGCTTC TGTCTTCAGGATGGATTGTTGGAAAGACTCGAAGAACCCTGCGGTTGCATTGGAAGTGTGAAGGTTGTGAAATTTAATTT TACCTTAAATTGTTAACATTTATTTGTTTCTTGCATGATTACTAGTAGATATTGTTTATTACCATAGATAATTTTGAAAT CTTAGAATATAAATTTTCTACGAGTGCTTTCAATTACAACCGGGGTTTTAAATTGCGGTTCGCAACAACAATTACACGTT CGTGCATCGATAGCGCAATTGCTATCTCATTAACCCGCATTTGTTGGCAATTTTGCGATGTGACCCGTAATCGCAATTTA AAACTCAGAGTTTACATTTAAATACTCACATGGTTTGAACGCCAAAAAACTAATTAAATGCAAATCTTCTTGCTCTATAC ATGCCATAGTTTGCTCACAGGAAATGCGTTGCTCAGTGGTGCAACACCAAGCGTGACACAACATGTGAGATCTGCAAGCA GGTATGAATAACTATGGTTTATCTTCTCAGGTTTATGCTTATTTTTGTAGTATTGCATTCAGTTGATTCCAAATATATAC AGCTTACAACATTTCAGCCAACCAAATTTATTTTTTCATCTTCCTATTAAATTGATCATTAAAAAAAAGAGCCAAATGCA ATACCATTACTTTTGATAAAAACCATGCACTATAAAACTTAATGTTTATTTATTGTATTTTTTGTTTGTTTGCAGCTAGA GAATTGAATGCTACAGTAAATAATTTCATTTATCTACCAAAAAAAATATAATTTCATTTCCATATATAAGGTTTCTATTT TAAAATGCAATTAATCTAAGGGAAAATATATTATCAAAAAAAATGTAAGGGAAAATAACTTACATTCGGTTCAAAAAAAA ACTTACATTAATAATGCTTATATCTATACTTCATGATTCTGATATGCAGCCATACCAACCAAACTATGCTGTGACTACAC CACCTCCTTATGATGATGTGGAAATATACATGAGGCAAGTTTCTATTGTGTAAATTGTACTAAAACATTAGTAATTAACA TATTTTTTATTCAAAAAACATTATTAAAACTTCCAAATTATTCTAAAAAATACCTATTTCTTTTCTTGCAGTGAGCGTTG GAGGATTCCTTTTACTGAAATTCGGGTCCTCACACCCCTGCAGCTGGCGGAGCGCGGCATCAACCGCCTACTCCGATCAA TGAATGTGGACTTCAGCTTGAGGAACCCCACTGTGGGAATGATCTTCGGAACTGTACTCCTCCTCGTAAGACTTGAGAAC CCCCACTGTGGATGATGTATAACATGTTTGGATCACATTTTTTCCTAAATAAATTAATTTTGGCACCCATAAACGACTCA AGTAAGGTTTTCTCCATAGTTAAGGTCAACTTCAAAATCAATTATAAATATTTTAATAAAATGCACTTAACTTCAAAGTA ATTATAGAAAAATTTCATAAAATTCACTTAACCCCAATTGGAAGTGATTGTTGATAGTTCTAGGAGAATTTTTGGTTTTA ATTGGGAGTATAATTATCATTGAGTGAAACTACAAAATATAATGAAATTATCATGTTTTGGATTGTATAGTCACCGCTAA TTCAAACATACTATAAAGCTTCACATTTTGTGTTTACTTGACATGACATTACCTTCACTTGCAGCTTTTTGCAGCAATGA TTATAAGGGATGCTTACCACTATACGCCATCCAAGGAGGATAAACTTACTCACATTCTGTTTTGTGTATGTGCAATGAGC AACATTTTCCATCCTCGTACATAATCACATATGTTATTTGAGTATTAATCAACTTAGTTGAATCAATTTAAATATTTTAG TTTTTAGATATCATCTTTTATCATAATTTTAAAGAAAAGTTTGGTCTCACAGGTTCTGATGGTTATCATTCCTCCTATCT ATATCTTATCATGGATTGTGGAATGCAGGTAAGTTAATTAATTATACACATAAATATGTGTGTGTGTCACTATCCATTTT AATATTATATAAGATCTCATTTGGGTACCTATTTGTAATTTTTTGAAATTCAGGGACCAGAGAGAAAGGGAGAGGTTACT GATGACGATGACCAGGGAGAGGGAGGGAGAGACCGAGCTTCTTCCATAGCATCATCGGAGTTTAATTTGGAGAAAAAAGT TTGCCCCTGGGTTAACCATATAAAAATTATTTGTAGATCAGCTATATATAAGAATCAAAGTGGACAAACATAGAAAAAAA ATTATGTAAAGAAGAGGTGATCAAATAAGGTCATTGGGAACTAGTGTGCAACTATCATCTTAGCAAGTACATGTCCAATT GCGTCTGGTTATAAATTACATATGAACCAATGAGCATTGTCTCAATGTTGAAAAAAGCTTGTTTTGTATCCCGGGTTGTT CATATTTTAAACTCTTGAAGTGGGTAATCAAGTGAAAGTTTTCTTTCTTTGTATCACCCATGAGTTTTGCGCTACAATAT CTACAAACAAATTTCATTTTTCATCTATCATTTTTCCTTTTAAAATGATTCCAAACATATGATGTTAGCTTTTTTGTAAC ACCCAAATTCTGACTTGGAGGAAGAATTTGATTTATGTCTTGAATTGTATTTTCTACATTTGTTCCACCGACATGTGTAT AACTCATAAGATTATTC
CDS sequence (LotjaGi1g1v0502900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAATGCAAAAAGGAAGATCAAGTCACTGTGATCACCCCTAAGGAAGTTTTCGTAACCCCAGTTCAGGAAACTTC AGCTACCAACGACCACATTATTGCTGTCCCCATTGAAGAACTGGGTGTTATCATTGCTGAAAAGGATGATGAGAAGCCTG AAACTAATAATGATGATTGCTGCCGCTTCTGTCTTCAGGATGGATTGTTGGAAAGACTCGAAGAACCCTGCGGTTGCATT GGAAGTGTGAAGTTTGCTCACAGGAAATGCGTTGCTCAGTGGTGCAACACCAAGCGTGACACAACATGTGAGATCTGCAA GCAGCCATACCAACCAAACTATGCTGTGACTACACCACCTCCTTATGATGATGTGGAAATATACATGAGTGAGCGTTGGA GGATTCCTTTTACTGAAATTCGGGTCCTCACACCCCTGCAGCTGGCGGAGCGCGGCATCAACCGCCTACTCCGATCAATG AATGTGGACTTCAGCTTGAGGAACCCCACTGTGGGAATGATCTTCGGAACTGTACTCCTCCTCCTTTTTGCAGCAATGAT TATAAGGGATGCTTACCACTATACGCCATCCAAGGAGGATAAACTTACTCACATTCTGTTTTGTGTTCTGATGGTTATCA TTCCTCCTATCTATATCTTATCATGGATTGTGGAATGCAGGGACCAGAGAGAAAGGGAGAGGTTACTGATGACGATGACC AGGGAGAGGGAGGGAGAGACCGAGCTTCTTCCATAG
Protein sequence (LotjaGi1g1v0502900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEECKKEDQVTVITPKEVFVTPVQETSATNDHIIAVPIEELGVIIAEKDDEKPETNNDDCCRFCLQDGLLERLEEPCGCI GSVKFAHRKCVAQWCNTKRDTTCEICKQPYQPNYAVTTPPPYDDVEIYMSERWRIPFTEIRVLTPLQLAERGINRLLRSM NVDFSLRNPTVGMIFGTVLLLLFAAMIIRDAYHYTPSKEDKLTHILFCVLMVIIPPIYILSWIVECRDQRERERLLMTMT REREGETELLP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 169 | 169 | - | – | |
| Gene3D | 46 | 119 | 74 | 6.8E-17 | ||
| PANTHER | 49 | 234 | 186 | 3.3E-41 | ||
| ProSiteProfiles | 53 | 113 | 61 | 20.796 | ||
| SUPERFAMILY | 56 | 111 | 56 | 1.13E-12 | – | |
| SMART | 60 | 107 | 48 | 1.1E-14 | ||
| CDD | 61 | 107 | 47 | 3.59945E-13 | – | |
| Pfam | 61 | 106 | 46 | 1.5E-10 | ||
| TMHMM | 165 | 187 | 23 | - | – | |
| Phobius | 170 | 192 | 23 | - | – | |
| Phobius | 193 | 203 | 11 | - | – | |
| TMHMM | 202 | 224 | 23 | - | – | |
| Phobius | 204 | 224 | 21 | - | – | |
| Phobius | 225 | 251 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0502900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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