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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0503700 |
| Transcript ID | LotjaGi1g1v0503700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT2G36730.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9ZQA1|PP188_ARATH Pentatricopeptide repeat-containing protein At2g36730; TrEMBL-Plants: tr|I1N4D8|I1N4D8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0503700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102133194..102135079) extracted from Lotus japonicus Gifu genome v1.2.
TCATGCCTGAAATTTGAAAACCTATGAACACACGGTCCCTATCAAACAAGAATCAATGTCTTTCTCTCCTAAACCTGTGT CGTTCCATCGACCAACTCCATCAAATCCAAGCACAGTTCCACATCCATGGTCACTACCACAACACATACTTGCTCTCAGA ACTCGTCTACGTTTGCTCCCTCTCTCCCTCCAAGAATCTCACTCACGCCCGAAAACTCGTTCTTCACTCCGCCACCCCAT CACCCATTTCATGGAACATCCTCATCAGGGGCTTCGCCACAAGCGATTCTCCCATTGAAGCCATCTGGGTATTCCGGAAA ATGCGAGAACGAGGAGTTAAACCCAACAAGCTCACGTTCCCTTTTCTCCTCAAGTGCTGCGCGGTGGGTTCTGCGCTGAG AGAAGGGAAGCAGGTGCATGCGGATGCTGTGAAGTTTGGTTTGGACTCTGATGTTTACGTTGGTAATAATCTGATTAACT TTTATGGTCGTTGCAAGAAAATTCTGGATGCGAGAAAGGTGTTTGATGAAATGCCTGAGAGAACCCCTGTTTCTTGGAAC TCGGTTATAACTGCTTGTGTTGAGAATCTTTGGTTACGTGATGGAGTTGAGTATTTTTTGAAGATGAGGGGTTCTGGGTT TGAGCCGGATGAGACTAGCATGGTGTTGATGCTCTCTGCTTGTGCAGAGTTAGGGTACTTGAGCCTGGGAAGATGGGTTC ATTGTCAAGTTGTTTTGAGAGGAATGTTTTTGAGTTGTCAGTTGGGTACTGCTCTTGTTGACATGTATGGAAAGTCTGGA GCTTTGGGTTATGCTAGGCTTGTTTTTGAGAGAATGGAAAAGAGAAATGTGTTGACTTGGAGTGCAATGATATTAGGGTT AGCCCAACATGGTTTTGCTGAGGAAGCGCTATCTCTGTTTGAAATGATGAGTGAAAACCATGATAATATACGCCCAAATT ATGTAACATATCTTGGAGTTCTATGTGCCTGCAGCCATGCTGGGATGGTAGATGAGGGGTACCGGTATTTCCGTGAAATG GAATATGTCCATGGGATCAAACCTCTGATGGTACACTATGGTGCAATGGTTGATATCTACGGCCGTGCTGGCCTTCTTAG AGAAGCTTATGAATTTATACAGAGCATGCCTGTTAATCCTGACCCAATTGTGTGGAGAACATTGCTTAGTGCATGCAGTG TTCACGATGCTCATGACCGTACAGGAATAGGGGATAAAGTGAGGAAGGAGTTACTTCTTGTGGAACCAAGAAGGGGAGGG AATTTAGTTATTGTTGCTAACTTGTATGCTGAAGCAGGGATGTGGGAGAGAGCAGCAAATGTGAGGAGGGTCATGAGAGA TGGAGGGATGAAGAAGATGGCTGGAGAGAGTTGTGTTGATTTAGGTGGGTCCATGATTAGGTTCTTCGCAGGGTATGATT CTCGCCCTGATTTGATTCCCGTTTATCATCTGCTAGATGGACTGAACCTGCACTTGAAGATGGCTAATGAGTTGTAGTAG AAGTTGCTTTTATTGAATTCTACTTGGAGCTGAATTCGAAATTAAAATAGGACAATTGATTAGGGGTATGTTTGGAAACT CGTTGGTGCCCGTGACTCACTTTGAGGTAAAAAGTGAACGAAATTTTTTTGTAGATTGGAATGAATACGCTTTCACATTA GCTCTAGTATCCGAATAGTACCCACTAGTTCTTTGACATTTTGTAGTGTTGGTCATTTTTATAAACCAACAGTTTTACCA TGTATTTGTAATTTGTTTTCTAGGATGTGTCATGTTGGCACATCCTAGTTATGAATATCTGGAAAATTCTTATAATCTTA ATGTTTTCAAGCAATTATTCTGCATAAATAAGAAATTGATTTTGGC
CDS sequence (LotjaGi1g1v0503700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACACACGGTCCCTATCAAACAAGAATCAATGTCTTTCTCTCCTAAACCTGTGTCGTTCCATCGACCAACTCCATCA AATCCAAGCACAGTTCCACATCCATGGTCACTACCACAACACATACTTGCTCTCAGAACTCGTCTACGTTTGCTCCCTCT CTCCCTCCAAGAATCTCACTCACGCCCGAAAACTCGTTCTTCACTCCGCCACCCCATCACCCATTTCATGGAACATCCTC ATCAGGGGCTTCGCCACAAGCGATTCTCCCATTGAAGCCATCTGGGTATTCCGGAAAATGCGAGAACGAGGAGTTAAACC CAACAAGCTCACGTTCCCTTTTCTCCTCAAGTGCTGCGCGGTGGGTTCTGCGCTGAGAGAAGGGAAGCAGGTGCATGCGG ATGCTGTGAAGTTTGGTTTGGACTCTGATGTTTACGTTGGTAATAATCTGATTAACTTTTATGGTCGTTGCAAGAAAATT CTGGATGCGAGAAAGGTGTTTGATGAAATGCCTGAGAGAACCCCTGTTTCTTGGAACTCGGTTATAACTGCTTGTGTTGA GAATCTTTGGTTACGTGATGGAGTTGAGTATTTTTTGAAGATGAGGGGTTCTGGGTTTGAGCCGGATGAGACTAGCATGG TGTTGATGCTCTCTGCTTGTGCAGAGTTAGGGTACTTGAGCCTGGGAAGATGGGTTCATTGTCAAGTTGTTTTGAGAGGA ATGTTTTTGAGTTGTCAGTTGGGTACTGCTCTTGTTGACATGTATGGAAAGTCTGGAGCTTTGGGTTATGCTAGGCTTGT TTTTGAGAGAATGGAAAAGAGAAATGTGTTGACTTGGAGTGCAATGATATTAGGGTTAGCCCAACATGGTTTTGCTGAGG AAGCGCTATCTCTGTTTGAAATGATGAGTGAAAACCATGATAATATACGCCCAAATTATGTAACATATCTTGGAGTTCTA TGTGCCTGCAGCCATGCTGGGATGGTAGATGAGGGGTACCGGTATTTCCGTGAAATGGAATATGTCCATGGGATCAAACC TCTGATGGTACACTATGGTGCAATGGTTGATATCTACGGCCGTGCTGGCCTTCTTAGAGAAGCTTATGAATTTATACAGA GCATGCCTGTTAATCCTGACCCAATTGTGTGGAGAACATTGCTTAGTGCATGCAGTGTTCACGATGCTCATGACCGTACA GGAATAGGGGATAAAGTGAGGAAGGAGTTACTTCTTGTGGAACCAAGAAGGGGAGGGAATTTAGTTATTGTTGCTAACTT GTATGCTGAAGCAGGGATGTGGGAGAGAGCAGCAAATGTGAGGAGGGTCATGAGAGATGGAGGGATGAAGAAGATGGCTG GAGAGAGTTGTGTTGATTTAGGTGGGTCCATGATTAGGTTCTTCGCAGGGTATGATTCTCGCCCTGATTTGATTCCCGTT TATCATCTGCTAGATGGACTGAACCTGCACTTGAAGATGGCTAATGAGTTGTAG
Protein sequence (LotjaGi1g1v0503700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNTRSLSNKNQCLSLLNLCRSIDQLHQIQAQFHIHGHYHNTYLLSELVYVCSLSPSKNLTHARKLVLHSATPSPISWNIL IRGFATSDSPIEAIWVFRKMRERGVKPNKLTFPFLLKCCAVGSALREGKQVHADAVKFGLDSDVYVGNNLINFYGRCKKI LDARKVFDEMPERTPVSWNSVITACVENLWLRDGVEYFLKMRGSGFEPDETSMVLMLSACAELGYLSLGRWVHCQVVLRG MFLSCQLGTALVDMYGKSGALGYARLVFERMEKRNVLTWSAMILGLAQHGFAEEALSLFEMMSENHDNIRPNYVTYLGVL CACSHAGMVDEGYRYFREMEYVHGIKPLMVHYGAMVDIYGRAGLLREAYEFIQSMPVNPDPIVWRTLLSACSVHDAHDRT GIGDKVRKELLLVEPRRGGNLVIVANLYAEAGMWERAANVRRVMRDGGMKKMAGESCVDLGGSMIRFFAGYDSRPDLIPV YHLLDGLNLHLKMANEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 10 | 174 | 165 | 4.8E-24 | ||
| PANTHER | 13 | 132 | 120 | 5.4E-88 | – | |
| ProSiteProfiles | 73 | 107 | 35 | 12.101 | ||
| Pfam | 73 | 120 | 48 | 5.4E-9 | ||
| TIGRFAM | 75 | 108 | 34 | 9.5E-6 | ||
| ProSiteProfiles | 108 | 142 | 35 | 5.941 | ||
| PANTHER | 115 | 229 | 115 | 5.4E-88 | – | |
| ProSiteProfiles | 143 | 173 | 31 | 8.462 | ||
| Pfam | 148 | 173 | 26 | 0.0035 | ||
| TIGRFAM | 148 | 173 | 26 | 0.0023 | ||
| ProSiteProfiles | 174 | 208 | 35 | 9.843 | ||
| TIGRFAM | 176 | 210 | 35 | 2.7E-5 | ||
| Pfam | 176 | 206 | 31 | 2.2E-4 | ||
| ProSiteProfiles | 209 | 243 | 35 | 6.237 | ||
| Gene3D | 225 | 342 | 118 | 1.3E-22 | ||
| PANTHER | 228 | 449 | 222 | 5.4E-88 | – | |
| ProSiteProfiles | 244 | 274 | 31 | 6.401 | ||
| ProSiteProfiles | 275 | 305 | 31 | 9.865 | ||
| Pfam | 275 | 323 | 49 | 2.6E-7 | ||
| TIGRFAM | 278 | 305 | 28 | 1.8E-4 | ||
| ProSiteProfiles | 312 | 347 | 36 | 7.958 | ||
| TIGRFAM | 314 | 347 | 34 | 1.0E-4 | ||
| Gene3D | 343 | 459 | 117 | 1.6E-9 | ||
| ProSiteProfiles | 348 | 378 | 31 | 7.015 | ||
| Pfam | 350 | 376 | 27 | 0.0015 | ||
| ProSiteProfiles | 417 | 451 | 35 | 6.04 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0503700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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