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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0503900 |
| Transcript ID | LotjaGi1g1v0503900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein NRT1/ PTR FAMILY 5.1; TAIR: AT1G32450.1 nitrate transporter 1.5; Swiss-Prot: sp|Q9LQL2|PTR14_ARATH Protein NRT1/ PTR FAMILY 7.3; TrEMBL-Plants: tr|Q2HUR9|Q2HUR9_MEDTR Peptide/nitrate transporter; Found in the gene: LotjaGi1g1v0503900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102166462..102170362) extracted from Lotus japonicus Gifu genome v1.2.
GCAGACAGAAGGAGAACTGGAACTTGGGTGGCAGGAATTTTGATTTTAGGTATCACCCACCTCTTCAACTAAAATTTAGT ACAAGTTAAATTTATGATACATTCATGCTAAAATTAATTTGCTGAAAAACCATTTAAATTTGTGAATCGGAAATTTCTTA TTCCATAGACAGGCCTACTATATATATTCTATCATATTTAAGGTTATTTTCATTTTTGTGAAACATATGTTATGAAACCT TGTATATATTAATTACAAATTTCACTGAGTAATGTGTTTTTGTCTCGTGGATGATACTATATTAGTGAACCAAGGACTTG CAACTTTGGCATTCTTTGGTGTGGGAGTGAATCTCGTGCTGTTTCTCACGAGAGTGATGGGTCAAGACAATGCTGATGCA GCCAACAATGTTAGCAAGTGGACAGGGACAGTTTACATCTTCTCTCTTCTTGGAGCCTTCGTTAGTGACTCTTACTTGGG GAGGTATATGACGTGTGCCATCTTCCAGGTCATTTTTGTTGTGGTAAGTTATTCATTGGATAATGAATGTTGAGTTATGA TTATTCATATTTTCAGTTCATAAAATATGTAAGTTAATTATGGTCTGATAAACAAACACTATTCTAAAAATTAATAAAAT TAATTGTATTTTCTTAATATGTGTATTTTTTTCTTTCTAGACAATTAATAAGGAGCAAATGAATTATTTTTTGGTTACAA GAGAAATGCTAAAAAGAACTAGAAACTACGCCGTTACGTCCAAACACAAGGAAGCTATGATGAACGATGGAGGATGCCGC CATATTCGGCGCAAGGAACAAATAAATTATTATATATTAAGAGTAAAAATGTTATTTCACATAAAAATAATATTCTCTCT TCTCACTTTTTATTCAATAATTCAATGAGCTACAATGTTTAAGTATGAAAAACACATCAAATGTTTCCAATGCCTTAAAT TGAAAAAATGTTTTGAAAAACACATCATTTTTCTGTCGCAAATTCGAGATTTTATGTGGAAAACACAGTAGTTTACATCT TTATGTGTTCATGAGAATTAATGCTCTAAACCTGACAGGGCCTGGCGTCTTTATCACTGACAACTTACTTATTCCTATTG GAGCCCAATGGCTGTGGTGATAAAGAATTACCCTGCACATCACATTCATCATACCAAACTGCTTTATTCTATGTCTCCAT TTATCTAATAGCCCTAGGAAATGGAGGATACCAACCAAACATAGCTACATTTGGGGCTGATCAGTTTGATGAAGAGGATC CAAAAGAACAACACTCAAAAATATCATTTTTCAGCTATTTTTATTTGGCTTTGAACCTTGGCTCACTCTTCTCAAACACC ATATTGAATTACTTTGAGGATGATGGGTTATGGACTTTGGGGTTTTGGGCCTCAGCTGGCTCTGCCTTTTTGGCATTGGT TCTGTTTCTTTGTGGCACACCATGGTATAGATACTTTAAGCCTGGTGGGAACCCTGTTCCTAGATTTTGCCAAGTTTTTG TTGCTGCAATGAGAAAGTGGAAGGTGAAGGTGTCACCGGGTGAAGAAGATCAACTTCATGAAGTTGAAGAATGTTCAACC AATGGTGGGAGAAAAATGTTCCACACAGAAGGATTTAGGTATGTCTATATAATAATCACAGTTTATATTTGGTCAAAGGT ATGCATATCATTACATGTATTCATATGTTTGATAAATAGTTGGTCTTCCATGTCATTATTTTTTGGGCAAATGGTCTTCC CAATGTAAATATATGAAGTTTGTTTCTTAAGGTTAATTCTTAAAGAACAAGCCTAGTAACATAAAAGTAACCAAACAAGC TCAGCTGAGACCCAAATAAACAAGCCCACCACACAAAAACTGTCTTTTTTTTATGTCTTTGAGAAAGAATTTTTGTTGTT GTTATGACATAAAAATTATAATAACAATTCTATAGTGAATCATGTTACAAAAAAGGTTGATCTATGAATTATGTTTTTAC TAGTACATGTTATTTATAATATACTTCTTACGCGCTAAAATTAATTTGCAGATGAACCCTTTTAACATGTGAATTGGGTT TTTCTTTAGTCCACGGTGCACAAAGAAAAATGAGTATTCACACCACTTGCCTAAAAGATTGATTCACTACTAGACCTACA GTTCATAATAATTATATAATTTGAGTTTGATAAGTGGACCTTTAAAAAACAGAGTTTGACTAGTGAGTTTTATTATTGAC AATTACAATTAGCCAAGAAGCAGGGTTTAGTCACCTGATCATAGACCTTTCAGATATCACAATTAAATTATTTGAATTTA AATCATAAGTTATCTTGATAATCCGTCCATTGCAGAGAGTCTCCTTTCACTTTTGATTGATTTTGTATAAATATACAATC AGAGAAGTCACTGATGGAAAATTTATACTGAATTGTTAGGTTCTTAGACAAAGCAGCACTTATCACATCACAGGAATCCA AACAAGAAAATGAATGCAGTCTTTGGCATCTCTCCACTGTGACACAAGTTGAGGAAGTGAAATGCATACTGAGACTACTC CCAATTTGGCTCTGCACCATACTGTTCTCAGTTGTTTTCAGCCAAATGGCATCACTATTTGTGGAGCAAGGTGCTGCAAT GGACACAAAAATTTCATCTTTCAACATTCCTCCCGCAAGCATGTCATGCTTTGACATCCTCAGTGTAGCTTCATGCATCT TCATCTACAGGAGAGTCCTTGATCCCCTTGTAGCCAAAACAATGAAATCCAAAGGAATCACACAGCTTCAGAGGATGGGA ATTGGTCTAGTCCTTGCAATCATGGCCATGGTAGCAGCAGGATTGGTAGAGCAATTCAGGTTGGAGTTTTGATGTTTTGT CGCATTTTCACTCACTTTTTATTTCTATCTCTCTTCTTTTCCGATCATATTGGATTTATTGAGTATATTCAGTTAGAAGA AGTTAGTTTAGTTAGAATCGGTTAGTTAGCAGAATCATTTTTATTGGAGGGAAAGTTAGTATTTAACTCTTTAGCTCATA CATTGTATATTCAGGGCGGAACCAGGCAAAATGAGTAAGGAGGCGAAACACACTAACAAAATCAAGAATAACAAATTAAA TAAGACAGTATAAAATTTGTAGGGAGGTGAAAATAACATTTGATTACTACTTTATTAAGAACGTATTTTCAGAGAGCGAT TGTCACATTTTAAATTCACGCAGGTACATATACTTTATGTATCAATTTGTGGAATAGATTTTCACATTTCACTCATTCAA TCACTCGCAATATGGTATTTGTTAGAAACTAAATATCAGATTCTAACTAAACTAACTTCTGAATATATTCAATAAATCTG ATATGTCATATCATATATCATATTACTCATTTATCTCTCTTTTATTCATATCCCTACATTGGGTGTGCATGTATTTGGTT TGAACACATAATTTTCCTTCAGGTTGAAGCATGCAACAAGTGAAGAAGGGTCAAGTTCACTATCCATTTTCTGGCAAGTG CCACAATATGTGCTCATAGGAGCATCAGAGGTATTCATGTATGTGGGTCAATTGGAGTTCTTCAATGGGCAAGCACCTGA TAGATTGAAGAGCTTTGGAAGTGCACTTTGCATGACATCAATTTCACTAGGAAACTATGTCAGCAGTTTGCTTGTTGCAA TTGTGATGAAGATCTCTGCCAGGGATGATGACATGCCCGGGTGGATCCCAGGGAACCTGAACAAGGGACATTTGGACAGG TTTTACTTCCTATTAGCAGCACTAACAGCAGCTGATTTTGTCATTTATGTTGCTATGGCTAGGTGGTATAAATATGTCAA ATTTCAAGGAAACAATGATGAAGAAGACATCAACAAAGAAAACATTGAGCTTAAGGTGTAG
CDS sequence (LotjaGi1g1v0503900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCAAGACAATGCTGATGCAGCCAACAATGTTAGCAAGTGGACAGGGACAGTTTACATCTTCTCTCTTCTTGGAGC CTTCGTTAGTGACTCTTACTTGGGGAGGTATATGACGTGTGCCATCTTCCAGGTCATTTTTGTTGTGGGCCTGGCGTCTT TATCACTGACAACTTACTTATTCCTATTGGAGCCCAATGGCTGTGGTGATAAAGAATTACCCTGCACATCACATTCATCA TACCAAACTGCTTTATTCTATGTCTCCATTTATCTAATAGCCCTAGGAAATGGAGGATACCAACCAAACATAGCTACATT TGGGGCTGATCAGTTTGATGAAGAGGATCCAAAAGAACAACACTCAAAAATATCATTTTTCAGCTATTTTTATTTGGCTT TGAACCTTGGCTCACTCTTCTCAAACACCATATTGAATTACTTTGAGGATGATGGGTTATGGACTTTGGGGTTTTGGGCC TCAGCTGGCTCTGCCTTTTTGGCATTGGTTCTGTTTCTTTGTGGCACACCATGGTATAGATACTTTAAGCCTGGTGGGAA CCCTGTTCCTAGATTTTGCCAAGTTTTTGTTGCTGCAATGAGAAAGTGGAAGGTGAAGGTGTCACCGGGTGAAGAAGATC AACTTCATGAAGTTGAAGAATGTTCAACCAATGGTGGGAGAAAAATGTTCCACACAGAAGGATTTAGGTTCTTAGACAAA GCAGCACTTATCACATCACAGGAATCCAAACAAGAAAATGAATGCAGTCTTTGGCATCTCTCCACTGTGACACAAGTTGA GGAAGTGAAATGCATACTGAGACTACTCCCAATTTGGCTCTGCACCATACTGTTCTCAGTTGTTTTCAGCCAAATGGCAT CACTATTTGTGGAGCAAGGTGCTGCAATGGACACAAAAATTTCATCTTTCAACATTCCTCCCGCAAGCATGTCATGCTTT GACATCCTCAGTGTAGCTTCATGCATCTTCATCTACAGGAGAGTCCTTGATCCCCTTGTAGCCAAAACAATGAAATCCAA AGGAATCACACAGCTTCAGAGGATGGGAATTGGTCTAGTCCTTGCAATCATGGCCATGGTAGCAGCAGGATTGGTAGAGC AATTCAGGGCGGAACCAGGTTGA
Protein sequence (LotjaGi1g1v0503900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGQDNADAANNVSKWTGTVYIFSLLGAFVSDSYLGRYMTCAIFQVIFVVGLASLSLTTYLFLLEPNGCGDKELPCTSHSS YQTALFYVSIYLIALGNGGYQPNIATFGADQFDEEDPKEQHSKISFFSYFYLALNLGSLFSNTILNYFEDDGLWTLGFWA SAGSAFLALVLFLCGTPWYRYFKPGGNPVPRFCQVFVAAMRKWKVKVSPGEEDQLHEVEECSTNGGRKMFHTEGFRFLDK AALITSQESKQENECSLWHLSTVTQVEEVKCILRLLPIWLCTILFSVVFSQMASLFVEQGAAMDTKISSFNIPPASMSCF DILSVASCIFIYRRVLDPLVAKTMKSKGITQLQRMGIGLVLAIMAMVAAGLVEQFRAEPG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 379 | 379 | 6.1E-116 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 376 | 376 | 2.7E-196 | – | |
| PANTHER | 1 | 376 | 376 | 2.7E-196 | ||
| CDD | 1 | 376 | 376 | 4.9649E-155 | – | |
| SUPERFAMILY | 4 | 369 | 366 | 1.7E-13 | ||
| Phobius | 12 | 29 | 18 | - | – | |
| TMHMM | 15 | 34 | 20 | - | – | |
| Phobius | 30 | 40 | 11 | - | – | |
| Pfam | 37 | 378 | 342 | 6.7E-81 | ||
| Phobius | 41 | 61 | 21 | - | – | |
| TMHMM | 41 | 63 | 23 | - | – | |
| Phobius | 62 | 80 | 19 | - | – | |
| Phobius | 81 | 100 | 20 | - | – | |
| TMHMM | 83 | 105 | 23 | - | – | |
| Phobius | 101 | 125 | 25 | - | – | |
| TMHMM | 126 | 148 | 23 | - | – | |
| Phobius | 126 | 148 | 23 | - | – | |
| Phobius | 149 | 153 | 5 | - | – | |
| TMHMM | 153 | 175 | 23 | - | – | |
| Phobius | 154 | 174 | 21 | - | – | |
| Phobius | 175 | 270 | 96 | - | – | |
| Phobius | 271 | 292 | 22 | - | – | |
| TMHMM | 275 | 297 | 23 | - | – | |
| Phobius | 293 | 311 | 19 | - | – | |
| Phobius | 312 | 332 | 21 | - | – | |
| TMHMM | 312 | 334 | 23 | - | – | |
| Phobius | 333 | 351 | 19 | - | – | |
| Phobius | 352 | 372 | 21 | - | – | |
| TMHMM | 355 | 372 | 18 | - | – | |
| Phobius | 373 | 380 | 8 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0503900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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