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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0504400 |
| Transcript ID | LotjaGi1g1v0504400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G50390.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q9FK33|PP427_ARATH Pentatricopeptide repeat-containing protein At5g50390, chloroplastic; TrEMBL-Plants: tr|A0A151TCC0|A0A151TCC0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0504400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102195946..102199147) extracted from Lotus japonicus Gifu genome v1.2.
CCAAACTCAATTCCCCTACCAAACCTACCGTTTGTACCAAATCTGGGCGGAAAACACAATGCTGCTGACGCTGACTCATT CCAACTCTCACCTTCTTCCTCTCTTCACATTCACCTTCAAATCCTCTTCTTCAACACCATTATGAAGAAGAAACCACCAT CGCCACCACCATTTGAAACCACCTTGCTCACCCACCATCACATTGTTCTTGGTTCCAATGGAGATTCCACTCTCACGTTT CCAAACCATATCACGGGACCAATTCCAAGATTTTTCCTTCCTGGGTTCTTCCTCAAAATTTTCCTCCTTTAGGTACTGTT TTGCCTCTAAGGTGAGATATTGGAGCTACCCATTTTCCCAGATTCGTTGTTCCTCTTCCATGGAACAAGGGTTGAGGCCC AAGCCTAAGAAAATTGGGCATGTGGAGAGGAAAGTTCCAGTTTTGGAGGATGCCCATGTCATGAAACCATCCACTTCTGG GCTCTGTAGTCAGATTGAGAAGTTGGCATTGTGTAATAGGTACAAGGAGGCAATGGACCTGTTTGAAATTTTGGAGCTTG AAGGTGATGGTGCTGATGTGGGTGGGAGTACTTATGATGCGTTGGTGAATGTTTGTGTTGGTTTGAGATCAATTAGAGGG GTTAAGAGGGTGTTTGGTTATATGATTAGTAATGGGTTTGAGCCTGATTTGTATATGATGAACAGGGTTTTGCATATGCA TGTCAGATGTGGTCTCATGCTTGATGCACGCAAGCTGTTTGCTGATATGCCTGAGAGAGACGCGGTTTCCTGGATGACCT TGATCGGCGGACTTGTGGACTCTGGGAATTACGCTGAAGCTTTTGAGCAGTTTTTGTGCATGTGGGAGGAGTTTAATGAC GGTAGGTCTCGCACTTTTGCCACCATGGTTCGGGCATCGGCTGGATTGGGTCTTATTGAGGTGGGAAGACAAATTCATTC GTGTGCTTTGAAGAGGGGAGTGGGTGAGGATAGTTTTGTGGCTTGTGCACTTATTGACATGTATAGCAAGTGCGGTAGCA TTGAAGATGCTCAATGTGTGTTTGATCAAATGCCGGAGAAGTCAACTGTAGGATGGAATTCTATTATTTCTGGCTATGCG CTTCGTGGTTATAGTGAGGAGGCTCTTAGTATATACCTTGAGATGCGTGATAGTGGTGCTAAAATAGACCAGTTTACTAT TTCAATAGTGATTAGAATTTGTGCAAGATTGGCGTCATTAGAACATGCGAAACAAGCTCATGCTGCGTTAGTTCGCCATG GTTTTGGTTCAGATATCGTGGCAAACACAGGACTTGTTGACTTCTATAGCAAATGGGGTAGGATGGAAGACGCTCGACAT GTTTTTGACAGGATGCATCGCAAGAATGTTATATCTTGGAATGCGTTGATTGCCGGATATGGTAATCATGGTCAGGGAGA ACAGGCAATAGAAATGTTTGAGCAGATGCTTCGAGAAAGAGTGATTCCCAACCATGTTACTTTCCTTGCTGTTTTATCTG CTTGTAGCTATTCAGGATTATCAGAACGAGGGTGGGAGATTTTTTACTCTATGAGTAGAGATCACAAGGTCAAGCCTAGA GCTATGCATTATGCATGTATGATTGAACTATTAGGCCGAGAGGGCTTATTAGATGAAGCTTTTGCACTAATAAGGAGTGC TCCTGTCGAACCAACCAAAAACATGTGGGTAGCATTGTTGACAGCATGCAGAATGCATGGGAATCTAGTGCTTGGGAAGT TTGCAGCCGAAAAGCTGTACGGAATGGAGCCTGGAAAGCTGTCTAGCTATGTGATGCTTCTGAATATGTATAGCAGTTCT GGAAAATTGATGGAAGCTGCTGGTGTCTTAAAAACCTTAAAGAGGAAGGGTTTAACAATGCTTCCAACTTGCTCCTGGAT TGAAGTCAAGAAACAGCCATATGCCTTCCTCTGTGGAGATAAATCCCACACCCAAACAAAAGAAATATACCAAAAGGTGG ACAACCTGATGGATGAGATATCAAGGCATGGTTACATTGAGGAGCATGAAATGTTGCTTCCTGATGTGGATGAAGAGGAA CAACGCATTCTAAAATACCATAGTGAAATGCTGGCAATAGCTTATGGTCTTATCAACACTCCTGATTGGACACCTTTACA AATAACTCAGGGCCATCGTGTATGTGGGAATTGCCATAATGCAATCAAACTTATAGCCATGGTTACAGGACGGGAGATTG TGGTAAGAGATGCTAGTAGATTTCACCATTTTAGAAATGGGACATGTTCTTGTGGCGACTATTGGTGATGACAAATTGTG TCATTCAAGTCATAATTACCTGTAAACTCAGTAGCTTTTGATAACTTACCTTCTCCCCTTATTTTCCCCAAACTTAGGCT CACTTTTGAGTAGGATACAATTCTATAGTGCACTGTACTGTTTTGTTAGTTGATTATTTTTTCTTCAAGGAATATTCCTG AAGGTGTAATAAAGTGTATGAACGAAAAGATTTAATAATTATGGAAAGAAAACAGAAGTTTCCAGCTCTCTCCTCTGGTT TCTTTGTCTTAATTCATTTCTTCTTTGCTTATGTTTATTCTAAATCCTTTTGTTTCATTTATGCTTTTATTTTTGGGTTA GGGGTGGAGGGGTGAAATGAGTATTATTGTTAATATGATGGATTTTCTTCTCGTTAGGGGTCTTTTTACCCTTTTTAGAA GTTTTTGCTCTATTCATTTTTGTGAGAATTCTCTATCCTCAAAAGTAGGATTTTCATTTTCCCCTTTTGCTTTTCTTTAT TTTTATTCTTCCTATCATCTTCTCTCTAGCACCTCTTGTCATCTTCTCTCCATCTCTATCACCCGCTGTGAGCATCATCG TGAACTCGAAGCCGAGCTCAAGAAGATGGCGCCCCCCCGGATGGAAGGGCTATTCTTGTTCTCAGAGAAAAGTGTGGCTA TTCTGTTGGTAGGTTAGAAGTTCCAGGTCCCAAGAAGAGCCGAAAGATGAAGAAGTAGGATACGGTAAAAGAATAAGAGA CTCATAACTCAGGCAGCAGAGGGTAATTGAATACAAAATGTAGTCTTTAATGGGAAGAGGAGTTCGTTATAGTTTATATT GGTCATTCTATTAGGAGTTAGGCTGTATTTTAAATATCCCCTCTCCCCTGGGCAGTAAGTTGTAACGAACCATGAATCAT AC
CDS sequence (LotjaGi1g1v0504400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGATTCCACTCTCACGTTTCCAAACCATATCACGGGACCAATTCCAAGATTTTTCCTTCCTGGGTTCTTCCTCAAA ATTTTCCTCCTTTAGGTACTGTTTTGCCTCTAAGGTGAGATATTGGAGCTACCCATTTTCCCAGATTCGTTGTTCCTCTT CCATGGAACAAGGGTTGAGGCCCAAGCCTAAGAAAATTGGGCATGTGGAGAGGAAAGTTCCAGTTTTGGAGGATGCCCAT GTCATGAAACCATCCACTTCTGGGCTCTGTAGTCAGATTGAGAAGTTGGCATTGTGTAATAGGTACAAGGAGGCAATGGA CCTGTTTGAAATTTTGGAGCTTGAAGGTGATGGTGCTGATGTGGGTGGGAGTACTTATGATGCGTTGGTGAATGTTTGTG TTGGTTTGAGATCAATTAGAGGGGTTAAGAGGGTGTTTGGTTATATGATTAGTAATGGGTTTGAGCCTGATTTGTATATG ATGAACAGGGTTTTGCATATGCATGTCAGATGTGGTCTCATGCTTGATGCACGCAAGCTGTTTGCTGATATGCCTGAGAG AGACGCGGTTTCCTGGATGACCTTGATCGGCGGACTTGTGGACTCTGGGAATTACGCTGAAGCTTTTGAGCAGTTTTTGT GCATGTGGGAGGAGTTTAATGACGGTAGGTCTCGCACTTTTGCCACCATGGTTCGGGCATCGGCTGGATTGGGTCTTATT GAGGTGGGAAGACAAATTCATTCGTGTGCTTTGAAGAGGGGAGTGGGTGAGGATAGTTTTGTGGCTTGTGCACTTATTGA CATGTATAGCAAGTGCGGTAGCATTGAAGATGCTCAATGTGTGTTTGATCAAATGCCGGAGAAGTCAACTGTAGGATGGA ATTCTATTATTTCTGGCTATGCGCTTCGTGGTTATAGTGAGGAGGCTCTTAGTATATACCTTGAGATGCGTGATAGTGGT GCTAAAATAGACCAGTTTACTATTTCAATAGTGATTAGAATTTGTGCAAGATTGGCGTCATTAGAACATGCGAAACAAGC TCATGCTGCGTTAGTTCGCCATGGTTTTGGTTCAGATATCGTGGCAAACACAGGACTTGTTGACTTCTATAGCAAATGGG GTAGGATGGAAGACGCTCGACATGTTTTTGACAGGATGCATCGCAAGAATGTTATATCTTGGAATGCGTTGATTGCCGGA TATGGTAATCATGGTCAGGGAGAACAGGCAATAGAAATGTTTGAGCAGATGCTTCGAGAAAGAGTGATTCCCAACCATGT TACTTTCCTTGCTGTTTTATCTGCTTGTAGCTATTCAGGATTATCAGAACGAGGGTGGGAGATTTTTTACTCTATGAGTA GAGATCACAAGGTCAAGCCTAGAGCTATGCATTATGCATGTATGATTGAACTATTAGGCCGAGAGGGCTTATTAGATGAA GCTTTTGCACTAATAAGGAGTGCTCCTGTCGAACCAACCAAAAACATGTGGGTAGCATTGTTGACAGCATGCAGAATGCA TGGGAATCTAGTGCTTGGGAAGTTTGCAGCCGAAAAGCTGTACGGAATGGAGCCTGGAAAGCTGTCTAGCTATGTGATGC TTCTGAATATGTATAGCAGTTCTGGAAAATTGATGGAAGCTGCTGGTGTCTTAAAAACCTTAAAGAGGAAGGGTTTAACA ATGCTTCCAACTTGCTCCTGGATTGAAGTCAAGAAACAGCCATATGCCTTCCTCTGTGGAGATAAATCCCACACCCAAAC AAAAGAAATATACCAAAAGGTGGACAACCTGATGGATGAGATATCAAGGCATGGTTACATTGAGGAGCATGAAATGTTGC TTCCTGATGTGGATGAAGAGGAACAACGCATTCTAAAATACCATAGTGAAATGCTGGCAATAGCTTATGGTCTTATCAAC ACTCCTGATTGGACACCTTTACAAATAACTCAGGGCCATCGTGTATGTGGGAATTGCCATAATGCAATCAAACTTATAGC CATGGTTACAGGACGGGAGATTGTGGTAAGAGATGCTAGTAGATTTCACCATTTTAGAAATGGGACATGTTCTTGTGGCG ACTATTGGTGA
Protein sequence (LotjaGi1g1v0504400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEIPLSRFQTISRDQFQDFSFLGSSSKFSSFRYCFASKVRYWSYPFSQIRCSSSMEQGLRPKPKKIGHVERKVPVLEDAH VMKPSTSGLCSQIEKLALCNRYKEAMDLFEILELEGDGADVGGSTYDALVNVCVGLRSIRGVKRVFGYMISNGFEPDLYM MNRVLHMHVRCGLMLDARKLFADMPERDAVSWMTLIGGLVDSGNYAEAFEQFLCMWEEFNDGRSRTFATMVRASAGLGLI EVGRQIHSCALKRGVGEDSFVACALIDMYSKCGSIEDAQCVFDQMPEKSTVGWNSIISGYALRGYSEEALSIYLEMRDSG AKIDQFTISIVIRICARLASLEHAKQAHAALVRHGFGSDIVANTGLVDFYSKWGRMEDARHVFDRMHRKNVISWNALIAG YGNHGQGEQAIEMFEQMLRERVIPNHVTFLAVLSACSYSGLSERGWEIFYSMSRDHKVKPRAMHYACMIELLGREGLLDE AFALIRSAPVEPTKNMWVALLTACRMHGNLVLGKFAAEKLYGMEPGKLSSYVMLLNMYSSSGKLMEAAGVLKTLKRKGLT MLPTCSWIEVKKQPYAFLCGDKSHTQTKEIYQKVDNLMDEISRHGYIEEHEMLLPDVDEEEQRILKYHSEMLAIAYGLIN TPDWTPLQITQGHRVCGNCHNAIKLIAMVTGREIVVRDASRFHHFRNGTCSCGDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 62 | 213 | 152 | 6.0E-19 | ||
| PANTHER | 99 | 247 | 149 | 1.8E-89 | – | |
| ProSiteProfiles | 122 | 156 | 35 | 8.517 | ||
| TIGRFAM | 125 | 157 | 33 | 1.8E-4 | ||
| ProSiteProfiles | 157 | 191 | 35 | 8.166 | ||
| Pfam | 160 | 187 | 28 | 0.21 | ||
| Pfam | 190 | 217 | 28 | 0.045 | ||
| ProSiteProfiles | 223 | 257 | 35 | 5.788 | ||
| Gene3D | 225 | 356 | 132 | 4.0E-24 | ||
| PANTHER | 226 | 344 | 119 | 1.8E-89 | – | |
| ProSiteProfiles | 258 | 288 | 31 | 8.769 | ||
| Pfam | 288 | 336 | 49 | 4.2E-10 | ||
| ProSiteProfiles | 289 | 323 | 35 | 10.369 | ||
| TIGRFAM | 293 | 324 | 32 | 1.5E-5 | ||
| ProSiteProfiles | 324 | 358 | 35 | 7.158 | ||
| PANTHER | 327 | 547 | 221 | 1.8E-89 | – | |
| ProSiteProfiles | 359 | 389 | 31 | 8.331 | ||
| TIGRFAM | 364 | 391 | 28 | 3.9E-5 | ||
| Pfam | 389 | 436 | 48 | 2.5E-12 | ||
| Gene3D | 390 | 573 | 184 | 1.0E-29 | ||
| ProSiteProfiles | 390 | 424 | 35 | 12.441 | ||
| TIGRFAM | 392 | 425 | 34 | 4.9E-8 | ||
| ProSiteProfiles | 425 | 460 | 36 | 7.772 | ||
| ProSiteProfiles | 461 | 491 | 31 | 5.996 | ||
| Pfam | 465 | 486 | 22 | 0.64 | ||
| ProSiteProfiles | 527 | 561 | 35 | 8.638 | ||
| Pfam | 530 | 559 | 30 | 0.039 | ||
| Pfam | 563 | 686 | 124 | 5.4E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0504400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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