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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0505400 |
| Transcript ID | LotjaGi1g1v0505400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB-related transcription factor; TAIR: AT5G15310.1 myb domain protein 16; Swiss-Prot: sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39; TrEMBL-Plants: tr|G3FSI4|G3FSI4_LOTJA MIXTA-like transcription factor; Found in the gene: LotjaGi1g1v0505400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102329226..102332900) extracted from Lotus japonicus Gifu genome v1.2.
AAATCAGTGACTAGTCTAGTGCAGTGCGTGTTCTTAAGGGTATTCTAATAGTAATGATATCAGTCCACATACCCAGTGTT TATCCCATTTATTCCGCTGACCTTTCTTCTCTTCCCATCTCTTTCATTCAGAGTCCTACTGAACCTTCTTTCTTTCTCTT TCGATCTCCTTCTCCTCTAGTGCTATATAAAGAATACTAGAAAGTTAAAGCTACTACACTCTTCAGTCTTCAGCACTGTT CCATTACTCAAAATGGGACGATCACCATGCTGTGAAAAAGTTGGTTTGAAGAAAGGACCATGGACTCCAGAGGAAGATCA GAAGCTCTTGGCTTACATTGAAGAACATGGCCATGGAAGCTGGCGTGCTTTGCCTGCAAAAGCTGGTAAGTATATGAAGA AAAAAAAAACAGTGACAATGTTTGGTGAGTTACATGGAAACTTAAGCTTGTTCTGGCCATTAATGTGTACAGGACTTCAA AGGTGTGGCAAGAGCTGCAGATTGAGATGGAGCAATTATCTAAGGCCTGATATCAAAAGGGGAAAGTTCAGCTTGCAAGA AGAACAAACCATCATTCAACTGCATGCACTCCTAGGGAACAGGTTTGATGTTTCTCTAAACTCTATATTCAATTGAGTCA TTCGGTTAAATAAGAAAGCTCATACAATTCAGATAAGCTTAAAATGTAATAAGTCATTCAATTTTAGTTGAATGACTTTG ATTCCTTAACTGTGAATTTAGAATTTCACTACAATTGATCTTCAGTCCATGGTCTTCAGGTTTTTGTCTTGATGTTCACA GGTGTTCATTTGATTATTTTCCTTTTTTCCCTATGAGTATGTTCATATAGTCAAACCTCATCAAAGGATTCTTTTGTTGT TGTTGTTGAGAACCATGATATCTATGACCCTGTACAAAAAAATTTAGTTGCACTAAGGTTGGTATTCTGACAGCCGACAA TTATGAGACTAATCTCCTTGAGCCACTTAATGTGATTTCAGAGTCTCGAGGTAATTAGTCTGGTATCCGTTAGTTCTGGA GATACATAGTCCAACCAAGAAAGAAAATATAATTTATCTATGACAATACTTCTATGATAATTTAAAAATCAAATGAAAAG AACCATGATATATTGTTTGGCACATAAATATTTAACTATTTGTTTTCTTACACAAGCACTTAGTGTGTGTGTGTGTGTTT CAGTCATTTTGCAGCAGGTAGCTATAATTTCTTTCTTTTCCAACTCCCTTGCTGAGCAGAATGTCTTAAATTCTATGACA TCTCAAGTTCTTGAACCACATATAATTCTATCCTACATTTCCAACACACAATCTTAATTGTTCCTTCACCATGCTCATAA ATTTACTCCTGACACCCAAGTTTATTCAAGACGGTCCTTAAATGTAAAAGGCTAGCTAGCTAGCTAGCTCTTCTTCCTCG CCAAGCTAAATCAATACTATGGTCCATCAAATATGATTCTAACCCTCTAAAATATGTTCTCTTAAATTTGCATTTTAGTC TTTCAAAACAAAAAATAGCATTTTAGATAATATCAATGGAACATAGTAAAAAGAAGTTTAGGCCCAGCTTCACCTACGTC TTGCTTATGGGAAATTTTCAATATGCATAGTATTTGATTTCAAACTTCTAAAAAATAAACCTTTGAAATTTACGAGTACT TATAGAATTTCTGATATATTCAAATTCATTTTCACTTATCACTTTTTATTTTTATCTCTTTTATTTCATATTATATCACT CATCAAATTTCTTATCTCTCTTTTATTCTTTTCTATCTCACAATGTTGGGTAAAATTGAGATGTGAATGTAATATTTTCA TTACACTCTGTCTAGCATCAACCACATGTTCCAATGGTGTACCAGTACATTGTTTGTAACTTGTAAAACATTGGATTTGT GACCATGTAAAATAAAGTTTGTAACTTGAAAAAATTGTTAGTCAAAAAATTAAGTAGCTGCCAAATAACTGTGAATCTAT CTTTCTCATAACAAATTCGAATTAATTTGGAAGCATTATTTACATCCACCACGCGAGTATACTCTATAGTCTATACTGCC CTTTTTCATTCTAAAAAATTGAGTTACATATAATTGATTTCAGCTTAAGGAAAAAGTTTGATTCATTTTACCTTTTAAAC ACGAAATTGAATTTAGAAAAAATGATATCTTAATTAAACATGTTTTCTTGTCTTGTACTTCACAGGTGGTCAGCAATAGC TACACATCTTTCAAAGAGAACAGATAATGAGATCAAGAACTACTGGAACACTCATCTAAAGAAAAGGCTAATCAAAATGG GAATTGACCCTGTGACTCACAAGCCCAAGAATGATGCCCTTCACTCTAGCATCGACAATGGCCATTCCAAGGTTGCAGCC AACCTCAGCCACATGGCTCAGTGGGAGAGTGCAAGGCTTGAGGCTGAAGCAAGGTTGGTCAGAGAATCTAAACTACGTTC ACACCTTGGAACAAGCTCTTCTATCTTACCATCACCATCCTCATCATCATTGAACAAACATGATACAGTGAAAGCTTGGA ACAATGGTAGTAGTGTTGTTGGTGACCTTGAATCTCCTAAGTCTACCTTATCTTTCTCAGAGAATAATAATAATAATCAT AATGATAATAATGTGGCACCAATTATGATAGAGTTTGTGGGGACTTCTTTAGAGAGAGGAATTGTGAAAGAAGAAGGTGA GCAAGAGTGGAAAGGATACAAAGATGGCATGGAGAATTCAATGCCTTTCACCTCTACTACCTTTCATGAGTTGACAATGA CCATGGAAGCCACATGGCCACCTTCTGATGAGTCTTTGAGGACCATTACTACTGCTGCTACTACAGCTGCTCGTGCACAT GTCCTTGGAGACCCGGTTGTTCAGGAAGGGTTGACCGATCTATTGCTGAATTCTAACTCCGATGATGATCGGAGTTTGTC GCCGGAGGGTGGTGGAGAGTCTAATAGTGGTGATGGTGGTGATGGTTGTGGCAGTGACTTCTATGAAGATAACAAGAACT ATTGGAACAATATTCTTAATTTGGTGAACTCTTCCCCTACTAATTCACCTATGTTTTGATAATCATGATATTATATTTGT ATTTACTTCTTTTTCTCAAAATTAATTCTGACACGTAGAAGCGACTTTGCATAATTGATTTTAGCTTGAGGATCTATTTA TATTTGAATTCCTTTATTGATTCCAAACAAAAAATCAATTTTAGAAGAAGCTTCGGTCTTTAACTTCTAGATGGATGTCA GAGTTGATTTTGAAGAAACCGAAGAAAACTAAATTGATCCAAAATGCTTATGAGTAGGGGTAAATGCTACATTGGTTTCA CCTTCACATTATTATTGCCATAAGAAGCGACCACATGCACACGGAATAGCTAGTAATGTATAGTGTCAGAGAGCAATAAG GTTCTACTGTGAAAAACAGCTCTTTGTCGCTTATGTGGTATCATCAAATGTTCATATCAATTTGTTATGGATTTGACTTG ATTTCTATGCTGTAGGGTAGAGGGATATATACGTATGCATGTAGACAACTGATATAATGTATGTGAGTTGAATGACTTTT ACTCGTATGTAATTTCCTGTGTTCAAAGTTCAAACTGTATACAATTATATCTAATAAAATAGAAGTAGTTACAGT
CDS sequence (LotjaGi1g1v0505400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGACGATCACCATGCTGTGAAAAAGTTGGTTTGAAGAAAGGACCATGGACTCCAGAGGAAGATCAGAAGCTCTTGGC TTACATTGAAGAACATGGCCATGGAAGCTGGCGTGCTTTGCCTGCAAAAGCTGGACTTCAAAGGTGTGGCAAGAGCTGCA GATTGAGATGGAGCAATTATCTAAGGCCTGATATCAAAAGGGGAAAGTTCAGCTTGCAAGAAGAACAAACCATCATTCAA CTGCATGCACTCCTAGGGAACAGGTGGTCAGCAATAGCTACACATCTTTCAAAGAGAACAGATAATGAGATCAAGAACTA CTGGAACACTCATCTAAAGAAAAGGCTAATCAAAATGGGAATTGACCCTGTGACTCACAAGCCCAAGAATGATGCCCTTC ACTCTAGCATCGACAATGGCCATTCCAAGGTTGCAGCCAACCTCAGCCACATGGCTCAGTGGGAGAGTGCAAGGCTTGAG GCTGAAGCAAGGTTGGTCAGAGAATCTAAACTACGTTCACACCTTGGAACAAGCTCTTCTATCTTACCATCACCATCCTC ATCATCATTGAACAAACATGATACAGTGAAAGCTTGGAACAATGGTAGTAGTGTTGTTGGTGACCTTGAATCTCCTAAGT CTACCTTATCTTTCTCAGAGAATAATAATAATAATCATAATGATAATAATGTGGCACCAATTATGATAGAGTTTGTGGGG ACTTCTTTAGAGAGAGGAATTGTGAAAGAAGAAGGTGAGCAAGAGTGGAAAGGATACAAAGATGGCATGGAGAATTCAAT GCCTTTCACCTCTACTACCTTTCATGAGTTGACAATGACCATGGAAGCCACATGGCCACCTTCTGATGAGTCTTTGAGGA CCATTACTACTGCTGCTACTACAGCTGCTCGTGCACATGTCCTTGGAGACCCGGTTGTTCAGGAAGGGTTGACCGATCTA TTGCTGAATTCTAACTCCGATGATGATCGGAGTTTGTCGCCGGAGGGTGGTGGAGAGTCTAATAGTGGTGATGGTGGTGA TGGTTGTGGCAGTGACTTCTATGAAGATAACAAGAACTATTGGAACAATATTCTTAATTTGGTGAACTCTTCCCCTACTA ATTCACCTATGTTTTGA
Protein sequence (LotjaGi1g1v0505400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRSPCCEKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWSNYLRPDIKRGKFSLQEEQTIIQ LHALLGNRWSAIATHLSKRTDNEIKNYWNTHLKKRLIKMGIDPVTHKPKNDALHSSIDNGHSKVAANLSHMAQWESARLE AEARLVRESKLRSHLGTSSSILPSPSSSSLNKHDTVKAWNNGSSVVGDLESPKSTLSFSENNNNNHNDNNVAPIMIEFVG TSLERGIVKEEGEQEWKGYKDGMENSMPFTSTTFHELTMTMEATWPPSDESLRTITTAATTAARAHVLGDPVVQEGLTDL LLNSNSDDDRSLSPEGGGESNSGDGGDGCGSDFYEDNKNYWNNILNLVNSSPTNSPMF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 222 | 222 | 9.6E-111 | – | |
| PANTHER | 1 | 222 | 222 | 9.6E-111 | ||
| ProSiteProfiles | 9 | 61 | 53 | 17.857 | ||
| SUPERFAMILY | 11 | 108 | 98 | 1.03E-29 | ||
| Gene3D | 11 | 67 | 57 | 5.5E-20 | – | |
| SMART | 13 | 63 | 51 | 6.6E-14 | ||
| Pfam | 14 | 61 | 48 | 1.6E-15 | ||
| CDD | 16 | 61 | 46 | 5.90996E-11 | ||
| ProSiteProfiles | 62 | 116 | 55 | 24.922 | ||
| SMART | 66 | 114 | 49 | 1.5E-15 | ||
| Pfam | 67 | 112 | 46 | 3.1E-14 | ||
| CDD | 69 | 112 | 44 | 1.73729E-10 | ||
| Gene3D | 69 | 116 | 48 | 6.8E-19 | – | |
| MobiDBLite | 174 | 229 | 56 | - | – | |
| MobiDBLite | 322 | 351 | 30 | - | – | |
| MobiDBLite | 322 | 338 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0505400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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