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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0506100 |
| Transcript ID | LotjaGi1g1v0506100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane emp24 domain-containing protein; TAIR: AT1G14010.1 emp24/gp25L/p24 family/GOLD family protein; Swiss-Prot: sp|Q8GYG1|P24D7_ARATH Transmembrane emp24 domain-containing protein p24delta7; TrEMBL-Plants: tr|A2Q3Q9|A2Q3Q9_MEDTR Emp24/gp25L/p24; Found in the gene: LotjaGi1g1v0506100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102434211..102436968) extracted from Lotus japonicus Gifu genome v1.2.
TAAAAAGGAAGAAAAATATAATTAAAAAAGGTTAAGAAAATTCTCATTTGAAAGAGAACCATGGTAGTTAACCACTTCTT TGGTAGTTAACCATTAGTTATGCATTTCTGCATTTTGAGTTTGCAGCAGTTGTTGTAGCTTGTTGCATTGTTTCCACGGT CATTTCCTTCTTCATTCCCATGCAAACCTTAGAATAATCTTCTTTTGTTACCCTCAAATCCCAATTTGGCCAAATTGAAA AGTTTCCATTGCCCAAATGTCCAATCAGATTCTCTTCCTCCTTCTTGTTTCCCCTGCATTGATGTGTAGCTTTGTGGATT CAATGCGGTTCGAATTGAAATCAAATCAACCCAAGTGCATCAATGAGGACATCAAGAGCAACGCCTTAACCGTTGGCAAA TACTATGTTGTTAGTCCCAGTGAAGGGTACCCAGTTCCTGATTCTCACAAGATCACTCTCAGGGTATGCTCATCATGATT CAATCATGAAATCCTAGCTTTGTATTGGAACCTTTCAATTTCAAATATAGAAATTTGAGTTCTCCTTTCTATATTAATTA TCTTCTCTTGTAATTATGAATTAAGGTAGAAAATTTAGAAGAACAAGATCAATAAGATTTCTAAATTGTTATACACTTTT TTTGCTTTTCACTTTAGAATTTTCTGAACTGGCTCATATTTTTTGGCATTAGCAATGCCATAGTTATAAAAAATATATAG AAAGTTATTTTTTTTATAGTAATAATAGATATATTGTTGATGTTTCAGTTATAGCATGTTCAAATCAACTTCTATTTCCT CAAAAAATTAGGCCCGTAGATGTAACTCGCGGTTCTTCCGCCCAGAATTAAATTTAGTTTTAGAATCAATGGTAGAATGA ATTTCATACATGCACTTAATCATATTTGTTTTGATCTTTGAAAAAACAAGTCTTTCATGCTAAAGAACATGTTCTTTTGG CCATGTATTAGCTTTGCATAATGTCATTAGTTTCCAGGTGCGTTCACCTTATGGGAACAATTATCACTTTTCAGATCGTG TGGAATCTGGTAATTTTGCATTTACTGCAGCTGAGGCCGGTGACTACACAGCTTGTTTTTCTATGGCGCCCGATCATGAT CCCGTATTAACTGTGATAATTGATTTTGAATGGAGATCTGGGGTGGCTGCCAGGGAGTGGGATAAGGTTGCCAAGAAAGG GCAACTTGAAGTAAGTATGAGTAGTACAAAAGTACAATGTTTTTTACTAAGCAATAGCATACTAGCATTCATGTGTTAAA AGAATTTCTGATTTATAGATCTAATTATCTGGTCTTATGTGTTTTCTGAAGTGTTGTTTATTTCCATCTCAGGCAATGGA ATTTGAGTTAAAGAAGTTGTATGGCACTGTCACATCCATTCATGATGAGATGTTTTATCTTCGTGGAAGGTATAAATACC CTGACTTCTGCCTACTAGTCTACCAATACCGTTGGCAACTTTGATTTATAGCATGTTTGGGTCATCTTTACTTTCATCAT AATCAATTTGGAAACTTAGTTCTATGACTAATTTTGGCTTTGGAATCAATAATAGAAGAATATCCAAACATGAATTTAGT ATCGATATTGGTATCTTTGAATTATTAGGATCATTCAAAATTTCTTTTAAGTGCAATAAATATGAAACATTATATGTTAT TGGCTCAGAGGAAATTGGAGTATTTTTTCAGAGGTGGATCTCTCTGAGTATGTCTACAGGCATGTCCCTCCCATCATTTT TCATATACTCACTGAAAATCCATGTGATTACAATGTCACACACCAACAATGAGGTTCTAAAACAAATGTGGCACAAGTTT GTTAATCCTATGGTATAACAGATTATTCTGTGATCTTCCTTTAACATGTCATAAAGCTAATCATTCAATGGGTTTGTGTT CATACTGTCCTTGGCTCAGAGGAAATTGGAATATTTTTTCAGAGATGGATCTATTTGAGTATGTCTATGGGCATGCCCCT CCCAGAATTTTCATATATTCACTGAAAAACCTTGTGATTACATAAATTCCAAGCACAAACAATAAGGTTTTGAAACAAAT GTGCACAGTGCACTAGTTTGTTGATCCATGGTATAAAAGATTATTCTGTGACCTTCCTTTAACATGCCATAAAGCTAATC ATTCAATGTGTTGGTGTGAAAAAAATCCCATCTTACATGCGACCGACATCCATCTCCCCTGTGCTCTTGCTCTATGAATT AAATTCTTTACTTGCATGTTAGTTTGTGTGGTTCAGGAATGTGACAGTCATGGAGACTAATTTTTTCTTGTTCATTCTTA TAATGGAGTTTTGCTTAACTTTGATGACCTTTGTTCCATGTGACTAACTGATATAGGGAGGAAGAGATGCATGATCTGAA CAGAGCAACAAACAGCAAGATGTTTACCTTCAGTTTCCTATCACTTTTGGTTTGCTTGTCTGTGGCTGGTTTGCAGCTAT GGCATTTGAAGGCCTTCTTTGAGAGGAAGAAGCTCCTCTAAGATCCTTTCACACAAATTTTATTCTTTGGTTAGCTTGGC TTTTCACTTTAGCTGCTGGGCTCGTTCTTAATGTATTTAAAATACACTATTTAGATTATGTTTCTCTCTTTTGCAATTCT TAATGATGATTACATTGATGAGAATTATAGTATACATCATATGCAATGAGCGGATAAGAGAAGATATTGAGGGGACGCCT ATCGTGGAGAAGCTAACGGAAAATCGGTTAAGGTGGTA
CDS sequence (LotjaGi1g1v0506100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCAATCAGATTCTCTTCCTCCTTCTTGTTTCCCCTGCATTGATGTGTAGCTTTGTGGATTCAATGCGGTTCGAATT GAAATCAAATCAACCCAAGTGCATCAATGAGGACATCAAGAGCAACGCCTTAACCGTTGGCAAATACTATGTTGTTAGTC CCAGTGAAGGGTACCCAGTTCCTGATTCTCACAAGATCACTCTCAGGGTGCGTTCACCTTATGGGAACAATTATCACTTT TCAGATCGTGTGGAATCTGGTAATTTTGCATTTACTGCAGCTGAGGCCGGTGACTACACAGCTTGTTTTTCTATGGCGCC CGATCATGATCCCGTATTAACTGTGATAATTGATTTTGAATGGAGATCTGGGGTGGCTGCCAGGGAGTGGGATAAGGTTG CCAAGAAAGGGCAACTTGAAGCAATGGAATTTGAGTTAAAGAAGTTGTATGGCACTGTCACATCCATTCATGATGAGATG TTTTATCTTCGTGGAAGGGAGGAAGAGATGCATGATCTGAACAGAGCAACAAACAGCAAGATGTTTACCTTCAGTTTCCT ATCACTTTTGGTTTGCTTGTCTGTGGCTGGTTTGCAGCTATGGCATTTGAAGGCCTTCTTTGAGAGGAAGAAGCTCCTCT AA
Protein sequence (LotjaGi1g1v0506100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNQILFLLLVSPALMCSFVDSMRFELKSNQPKCINEDIKSNALTVGKYYVVSPSEGYPVPDSHKITLRVRSPYGNNYHF SDRVESGNFAFTAAEAGDYTACFSMAPDHDPVLTVIIDFEWRSGVAAREWDKVAKKGQLEAMEFELKKLYGTVTSIHDEM FYLRGREEEMHDLNRATNSKMFTFSFLSLLVCLSVAGLQLWHLKAFFERKKLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| PANTHER | 5 | 213 | 209 | 1.2E-105 | ||
| PANTHER | 5 | 213 | 209 | 1.2E-105 | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| SMART | 22 | 208 | 187 | 2.4E-53 | ||
| Phobius | 23 | 180 | 158 | - | – | |
| Pfam | 23 | 208 | 186 | 3.1E-48 | ||
| ProSiteProfiles | 32 | 148 | 117 | 12.321 | ||
| Phobius | 181 | 201 | 21 | - | – | |
| TMHMM | 181 | 203 | 23 | - | – | |
| Phobius | 202 | 213 | 12 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0506100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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