Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0508300.1

Overview

Field Value
Gene ID LotjaGi1g1v0508300
Transcript ID LotjaGi1g1v0508300.1
Lotus japonicus genome version Gifu v1.2
Description O-methyltransferase; TAIR: AT5G54160.1 O-methyltransferase 1; Swiss-Prot: sp|P93324|CHOMT_MEDSA Isoliquiritigenin 2'-O-methyltransferase; TrEMBL-Plants: tr|A0A0R0F4I8|A0A0R0F4I8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0508300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:102696545..102699613) extracted from Lotus japonicus Gifu genome v1.2.

AGCAGCCCAAAACACACACACTACAAGCTTACAAATTAAGAATTAAACATGAATTCCAATTCCTCAGAGAAAGAGAACCA TGTTGATAGCACTAACAGTGACACCCTCTCTGCCATGGTGCTTGGTATCAGTGTGGTTTTCCCTGCAGCCCTCAATGCAG CGATTGAGCTCAACCTGTTTGACATAATTTCCAAGGGAAGCTCCCCACAAAATGGTGGGTTCTTGTCAGCCTCTGAAATC GCTTCTGAGCTACCAACCCAACACCACCACCCTGATTTGCCAAACAGGCTCGAACGCGTGCTGCGATTGCTCGCGAGCCA CTCTCTTCTCGCTGCTTCCACTCGCTCCGGTGAGGATGGTGCAGGTAGCGAGGTGAGAGTGTATGGGGTCTCACCTTCTG GTCAATATTTTGTCTCTGAAGGAAATCGTGATGGTTACCTTGCTTCATTCACATCGTTTCTTTGTCACCGTGAACTGTTT AGGGTATGGTAAGTGAGTAAGTGATGTTACAATGCTTAATTATTACGATGGAAAAAAGATGTGCCCATACTCAATAACAC TCACACTATATAAATTGATTTTCTATATTTGGTTTCACAAAAAGAAGTAAAGACAATACAAGTAAATATGTTTTAAAATC GGTTTTGTGTGTGGCTATAATATAGGCAAAATTTTAAGGAAGCAATTATTGACCCCGAGATTGATCTATTCAAGAGAGTT CATGGAACATCAAAGTTCGACCACTTCGGAAAAGATCCAGAAATGAACAATGTATTTAACAGAGCTATGTCTGATATATG CTCATCACACATGAACAGAATAATTGAAATATACACAGGATTTGAGGGTATATCAACTTTGGTTGACGTAGCAGGTGGAA ATGGACAAGGTCTCAAAATGATAATATCCAAATACCCTTCAATTAAAGGGGTTAATTTTGACCTTCCACAAGTGATTGAA AATTCACCAATACGTCCCGGTATTCCATCAATCTCTTGCGACAACTGATCTCTACATTTGTTAAGTTTTTTTTTGTTTGC ATAATCTTCTATCCAAATATTTTCAAAATTCATTTAGGGATTGAGCATGTTGGAGGAAACATGTTTGAAAGTATTCCCAG AGGTGATGCCATAATGCTAAAGGTTAGTATATTAAACTTTTTTTTGACAATTATTAAACATTTATTACCTTATAGTAATA ATTAATTTATATGTACTGAGAGTATAAATAGTTCTACTAGAGCTGTTAACATGAATTAGTTTGACCCATCCAGGTTGTAA AAAAAAACGAGTTGGGTTAGCCCGACTGACATTTTTACGAGACACAAAAAATTGGACCCGCTTGACCCGCCATGGGTTGA CTTACAAGTTTTAGAAAAAAATTATTAAAAAAGGTAAAAATTAGAAAGAAAAAAATATTGAAAATATTATAAAAAAAATG AAAAATATCATAATCAATGAATAAATCGTAATCAAGTGTTGATAGACTTCTAATGCAAATACATCTAGAATGGAAGTAAT GTGTTTCCTGTCAAAGAATAAATATATACAAAAAATTATATTCACTCTAGAAACACTAATATGCATAAAAAATTGAAGCG TGAAAGAATACCCATGTGTGACGTATGATATAATTGTCTACATTCTTTTTTGTTTTTGTTACAATTGTCTACATTCTAAT CTAACTTAACACATTTTTTCAATAAAACAAAAAAAAAATTAACATTTGATGACCTGCAAGCTATAAGCCAAGCCAATCTG ACTCGGAGTTTATACGAACTGAATTTTAACCAATTTAACCCATTAGCGAGTCGGGTTTGACACATAAGTTAATTAGAACT CAAATTGACAACGCGCTCTTAGTTTGACATTGATCAAGACATTCAATTATATCTCGTTGTGTTTTTTTTTGGTAGTTTAT TATTTAAAATTATTTATGATGTGATAAAATTGTGATTCAATTATTGGTAACTTGATTAAAATGCTAACTATAAATGTTTT TGTGTCAAATGATATTGTTGTTGAAGGCTATATTGCATAATTGGTCAGACGAGAAATGCTTGGAAATTTTAAGCAATTGT CACAAAGCTTTGCCAACAAATGGAAAGGTTATTGTAGGGGAATTCATACTGCCAGAAGATCCAGAAACTACAAATGAACA TAAATATGTTTCAATTCTTGATAACATCATGTTTATTACACCTGGTGGTAGGGAAAGGACTGAGAAACAACTTGAGTGTT TGGGCAAGCGCTCTGGATTTTCCAGGTTTCAAGTTGTTTGTCGCGCTTTCTCTGTTTTGGGAGTGATCGAGTTTCACAAA TAGGCAACTCATATTAAAGAGTGTCATCGTATTGTAATTTCTTTGTTCATTATGTTATTTTTATTTGGGTTAAAAACTTT AATCGTCCCTGAACTTTGGACATCGTTTGAAAATCGTCCCTCGCCGGAAAATTATCTGAAAACCATCCCTAGACTATTGA AAACTAATTTGACCCGTCCCTCCGGCCACCATACCTCCGGCGAAGCCCTTATATAACAATCCTTGAACTTTGAGCGAAAT CTGAAAACCGTCCCTCGCTGGAAAATTATTTGGAAACCGTCCCTGAACTATTAAAAACAAATTTGACCCATCCCTGAACT TTGAGCGAAATCTGAAAACCGTCCCTTTTTTATTTTTATTTTTTAAAATTAAAATTCCCTAATTTCTATGAATTAAATCT AAGACCCTTTAATCTAAGTCTGAATTCTCAATTTAACCACAAATCCCTTAATCTAACCCTAACTCATCTCAATTTAACCA CAATTCCTCCTTCAGATATCTCTTTTCTTCTTCTTTCTTCATCTTCATCTACATCTCATTTCCTCCACCAACAACATCTT TTTCTTCTTCTTCTTCTTGTTAGAAAATGTTCTGGGAATGAACATTGAAGAGAGGTATAGTACCTAGAGGTAGAGGGATT GTGCTAAGAGAGAATGAGAGTGAGAGAGAGAGTGCTGAATTTCGAGTGTTATTTCATCAATGAACTAAATTAGCCCCGGA AAAGCCCACGTAACAACCGGATTCATTGG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0508300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAATTCCAATTCCTCAGAGAAAGAGAACCATGTTGATAGCACTAACAGTGACACCCTCTCTGCCATGGTGCTTGGTAT CAGTGTGGTTTTCCCTGCAGCCCTCAATGCAGCGATTGAGCTCAACCTGTTTGACATAATTTCCAAGGGAAGCTCCCCAC AAAATGGTGGGTTCTTGTCAGCCTCTGAAATCGCTTCTGAGCTACCAACCCAACACCACCACCCTGATTTGCCAAACAGG CTCGAACGCGTGCTGCGATTGCTCGCGAGCCACTCTCTTCTCGCTGCTTCCACTCGCTCCGGTGAGGATGGTGCAGGTAG CGAGGTGAGAGTGTATGGGGTCTCACCTTCTGGTCAATATTTTGTCTCTGAAGGAAATCGTGATGGTTACCTTGCTTCAT TCACATCGTTTCTTTGTCACCGTGAACTGTTTAGGGTATGGCAAAATTTTAAGGAAGCAATTATTGACCCCGAGATTGAT CTATTCAAGAGAGTTCATGGAACATCAAAGTTCGACCACTTCGGAAAAGATCCAGAAATGAACAATGTATTTAACAGAGC TATGTCTGATATATGCTCATCACACATGAACAGAATAATTGAAATATACACAGGATTTGAGGGTATATCAACTTTGGTTG ACGTAGCAGGTGGAAATGGACAAGGTCTCAAAATGATAATATCCAAATACCCTTCAATTAAAGGGGTTAATTTTGACCTT CCACAAGTGATTGAAAATTCACCAATACGTCCCGGGATTGAGCATGTTGGAGGAAACATGTTTGAAAGTATTCCCAGAGG TGATGCCATAATGCTAAAGGCTATATTGCATAATTGGTCAGACGAGAAATGCTTGGAAATTTTAAGCAATTGTCACAAAG CTTTGCCAACAAATGGAAAGGTTATTGTAGGGGAATTCATACTGCCAGAAGATCCAGAAACTACAAATGAACATAAATAT GTTTCAATTCTTGATAACATCATGTTTATTACACCTGGTGGTAGGGAAAGGACTGAGAAACAACTTGAGTGTTTGGGCAA GCGCTCTGGATTTTCCAGGTTTCAAGTTGTTTGTCGCGCTTTCTCTGTTTTGGGAGTGATCGAGTTTCACAAATAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0508300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNSNSSEKENHVDSTNSDTLSAMVLGISVVFPAALNAAIELNLFDIISKGSSPQNGGFLSASEIASELPTQHHHPDLPNR LERVLRLLASHSLLAASTRSGEDGAGSEVRVYGVSPSGQYFVSEGNRDGYLASFTSFLCHRELFRVWQNFKEAIIDPEID LFKRVHGTSKFDHFGKDPEMNNVFNRAMSDICSSHMNRIIEIYTGFEGISTLVDVAGGNGQGLKMIISKYPSIKGVNFDL PQVIENSPIRPGIEHVGGNMFESIPRGDAIMLKAILHNWSDEKCLEILSNCHKALPTNGKVIVGEFILPEDPETTNEHKY VSILDNIMFITPGGRERTEKQLECLGKRSGFSRFQVVCRAFSVLGVIEFHK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 19 19 - –
PIRSF
PIRSF005739
1 371 371 1.1E-116
IPR016461
PANTHER
PTHR11746:SF221
10 370 361 1.5E-175 –
PANTHER
PTHR11746
10 370 361 1.5E-175 –
SUPERFAMILY
SSF46785
17 125 109 3.65E-20
IPR036390
Phobius
TRANSMEMBRANE
20 39 20 - –
TMHMM
TMhelix
20 39 20 - –
ProSiteProfiles
PS51683
23 371 349 70.54
IPR016461
Gene3D
G3DSA:1.10.10.10
28 199 172 2.3E-112
IPR036388
Pfam
PF08100
34 89 56 6.4E-15
IPR012967
Phobius
CYTOPLASMIC_DOMAIN
40 371 332 - –
SUPERFAMILY
SSF53335
130 369 240 1.86E-53
IPR029063
Pfam
PF00891
147 352 206 1.7E-58
IPR001077
Gene3D
G3DSA:3.40.50.150
181 364 184 2.3E-112 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008171
Molecular function O-methyltransferase activity Catalysis of the transfer of a methyl group to the oxygen atom of an acceptor molecule.
Subterm of
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0508300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…