Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0509200 |
| Transcript ID | LotjaGi1g1v0509200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycosyl hydrolase family 5 protein; TAIR: AT1G13130.1 Cellulase (glycosyl hydrolase family 5) protein; Swiss-Prot: sp|P54583|GUN1_ACIC1 Endoglucanase E1; TrEMBL-Plants: tr|G7L487|G7L487_MEDTR Hydrolyzing O-glycosyl compounds hydrolase; Found in the gene: LotjaGi1g1v0509200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102821415..102825078) extracted from Lotus japonicus Gifu genome v1.2.
GGATTCCAAAGGAAGGCATTAAATTATCGTTGAAAGAGAGTTACAATTGGTACTTAATCATTTACAACCAATATATAAAG TATGTCCTAACTAATCCTATGAACAAATATAACATGACTTGAAGTGCCACAACGAAATTTTGCATATAGCAAATGAGACT AACATTAGTTGTCGCAAAACAGCCCCCCTGCTAAAATTGGACAAATCCAATCTCATAATTTATCAACCTCATAACCGAAG AACATGCACGAAGAGAATAAAAACCCCACCAAAAACCCATTTCTCATATCTACATTAATTTGCATTAGACAAGATGGGAA AATCAAAACCTTTGTGCTTGTTTTCGCTATTGGCATTTTCTCTTTTTGCTTCACTTTCCCATTCTCTTCCCCTCTCAACC AACAAGAGATGGATAGTGAATGATGAGTCAGGGGAAAGGGTGAAGCTTCATTGCATAAATTGGTCAACCCACCTCAATGC AATGTTACCAGAGGGTCTTGATAAGATACCATTGAATGTTTTTATAGCTCAAATGAAAGAACATGGTTTCAATTGTGTTC GTTACACGTGGGCCACACACATGTTCACTCGCTATGGTGACCACAAGGTTGGAGAAACCTTGGACTCTTTGATGATCCAT CGTGTGAGGTTAGGACTTAGAAAACACAACCCTTATTATGAGAATATCACACATATAGAAGCCTTTGATGCTATGATTGA TCAGTTCGGGAAACAAGGTATGATGGTAGTGGCTGATAACCATGTTGGTGAACCTAGATGGTGTTGTGGGGAGAAGGATG GTAATGCATTCTTTGGAGATCGGCACTTTAACCCCCAGGAATGGCTACAAGGGCTTTCCATTGTTGCCAAACGCGTCAAA GGAAAACCTCAGGTTCATATTTACATATACTTCATTTCTCTCAAATCTTTCTCATTCCATTAGATCATATACATCATTTA TCATTTTTCTCCATCTTTTTATGTTCCGAATATTCTTATTTGAGGTATGTACAATAATAGTGTCTACTAATCATTTTTAT GAGTTAATCATGCATCTACCCATCAACATGGTATATAATTAAGGATAAAACTTACCCACAACCCTATCGGTATATTTTTT GCTATTGCATTCCTATTTTCTGATTTTCTTATTTGGGGTATGTACATGATGAAGTGTCTACCAACCATTTTCTTAAGTTA ATCATCTACCGTCGACATAGTATATAATTTATTAACGATAAAACTTACCTACATCACTATCGGAACATTTTGTGCTATTG TCCAATGAGAAATTCAATTACCCATTTTCTTATTATTTTATTAATGTAATAATTTTCCATCCATTTTACAAGCAATATTT CATGTTGTAGTGTGACTAAATGTTTTCTATGATTAAGTTCGAAATAAAATGTCAAATTGGTCTTTCAAAATTGAACACTA GCTACTAGCTAGCATGTTATTTTCCATAAAAAAAAATAATCATTAATTAAAAGTAGTGTCTAAATAATAATAAAAAATTA CATAGCAACCTTTCATGCCACGCGGTGGTTAGTTTGTGGTATATGTCTCCCTAGTTATATATAGGGCATTACTCTCGTGT CTATCTAAAGTGAGAGGGTATGGTACTTTTTAGTTATTTTTTAGGATATAATGTATTAAATTGTAAAATATAAATATTTA TTATGAAAGAAAACATGATGATTCAAGACAAAAGGCATGAATATGAAACTCCAAAAATGGTTACAAATTGTCTTATCTTT AATTAAGGTTTTAGATTTAGGTCTTTTACGTATTAACATTAGGAGAGAAACTCAATCATGATATTAGTGTTTTTTAGCTA CTAATAAAACATAAAACATGATTGATAATTGAGTTCCTTAAACATTTAGTCGATAATTTAATCTTTGAACAATGTTTGAA AAAAAACTATTTAATGTGCTTATAAAAAAAACTATTTAATGTGATCTAAATATCTCGAAAGAATTAATCTCACATTTTTC ACTTTATGACCAGGTGGTGGCAATAGGCTTGAGAAATGAACTACGAGGTCCAAATCAAAATGCCAATGATTGGTACAAGT ACATGACCCAAGGAGCAACCACAGTTCACAAAGCAAATCCAAATCTTCTAGTGTTTGTTTCTGGCTTGAGCTACGACACT GACTTAAGCTTCTTGAAGACAAGGCCTCTTAACATTGACATAGGTAACAAATTGGTGTACGAGGTGCATTCATATTCATG GTCATCAGGGTCACGAGAGGCTTGGATTGAAGAACCACTGAACCAAAAATGTGCCAAAGTGCTCAACGGGTTGAATGAAA AGGCAGGGTTTTTGATGGATGGCCCAAACCCAAGACCATTGATCATGAGTGAATTTGGCATGCTAATGAGCAACACAGAT GAGAAGAGCCACAGGTTCATGTCTTGTGTTTTGGTCTATCTTGCTGGCCTGGACTTGGATTGGGCTATGTGGGCTGCACA AGGTGGATACTATATCAGAGAGAATAACAAGACTGTGGAAGAGACTTTTGGTGTGTGGAAGTCTGATTTTAGCACACTCA GATACCCACAGTTTAATCAAAGGTTTCAGCTTGTGCAGAAGAAGCTTTTAGGTAAGATATATGGCCTTTGATATATATAA TATAAATGTTAGAAACAATAATATAAAATCATTTATGTGAGTTAATTAGTGATTAACATACACAACCAGAGGGTTAAAAT TGAGTAATGCATAATTAGATGATGTTTCCTAACAAACTACATATGGTGAATAACTCTATTTTAGATTTTTAGGTAAACAT ATAGTGGTTTGTTGGAAATTACACACACCTTTTTAAATGAGTTTTTATAAATAACAATATATTAGTCATCTAGAATGGAG TTATATATAGTCTCATCAGCTAAGTTAGACAATACATAAGTAACATAACTATATATGGTGGATTAGTTACATGTAAAAGT TGTTTTGAGAGTTATGACTTATTGTTACTGTCTATTTTCAGCCAATTACAATCATTAATAGTGCATTTTTTTTGAAATAA TTAATAGTGAAAATTTGATTAATATGTTTTTAATTACAGCAAAGAATTTTCAACATGAAATCCTCTATGACACAAGTTAA TGAATATTCTGTACTGTATTGAAAAAATTATGAATTATTATTTTTTAATTGCAGAACCAAGTTCAAATTCAAGCAAGTCC TTGATAATGTACCACCCACGAAGTGGGCAATGTGTGAAAGTTAACGAGAACAATGAACTTGAATTGGACGATTGTGAGGG GCAGAGTAGGTGGTGTCTAGAAGGACAACAAATCAAACTGGAGGGCAATGGCACCTGCATAAAAGCAATTGGTGATGGAT CTCCAGTGAAGCTCTCAAATGATTGCAAGAGTAAGCAAAGTTCTTGGAAGTTTAAGTCAGCAACCAATCTTCATTTAAGT ACCTTGGATGGACATGGTCAGAACTTGTGCTTGCAAAGGGAATCCACCATTTCACCTAAGATTGTTACCAGGAAATGCAT CTGTGTGGATGATGATCCTACTTGTTTGGACAACCCTCAAAGCCAGTGGTTTCAGCTTGTTACAACTAATGTGTAATTAT ATGTACATTGTAATATATCTTACTTATGAAAAATATAATTAATACTCTTCAATATCTGAATAAA
CDS sequence (LotjaGi1g1v0509200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAAATCAAAACCTTTGTGCTTGTTTTCGCTATTGGCATTTTCTCTTTTTGCTTCACTTTCCCATTCTCTTCCCCT CTCAACCAACAAGAGATGGATAGTGAATGATGAGTCAGGGGAAAGGGTGAAGCTTCATTGCATAAATTGGTCAACCCACC TCAATGCAATGTTACCAGAGGGTCTTGATAAGATACCATTGAATGTTTTTATAGCTCAAATGAAAGAACATGGTTTCAAT TGTGTTCGTTACACGTGGGCCACACACATGTTCACTCGCTATGGTGACCACAAGGTTGGAGAAACCTTGGACTCTTTGAT GATCCATCGTGTGAGGTTAGGACTTAGAAAACACAACCCTTATTATGAGAATATCACACATATAGAAGCCTTTGATGCTA TGATTGATCAGTTCGGGAAACAAGGTATGATGGTAGTGGCTGATAACCATGTTGGTGAACCTAGATGGTGTTGTGGGGAG AAGGATGGTAATGCATTCTTTGGAGATCGGCACTTTAACCCCCAGGAATGGCTACAAGGGCTTTCCATTGTTGCCAAACG CGTCAAAGGAAAACCTCAGGTGGTGGCAATAGGCTTGAGAAATGAACTACGAGGTCCAAATCAAAATGCCAATGATTGGT ACAAGTACATGACCCAAGGAGCAACCACAGTTCACAAAGCAAATCCAAATCTTCTAGTGTTTGTTTCTGGCTTGAGCTAC GACACTGACTTAAGCTTCTTGAAGACAAGGCCTCTTAACATTGACATAGGTAACAAATTGGTGTACGAGGTGCATTCATA TTCATGGTCATCAGGGTCACGAGAGGCTTGGATTGAAGAACCACTGAACCAAAAATGTGCCAAAGTGCTCAACGGGTTGA ATGAAAAGGCAGGGTTTTTGATGGATGGCCCAAACCCAAGACCATTGATCATGAGTGAATTTGGCATGCTAATGAGCAAC ACAGATGAGAAGAGCCACAGGTTCATGTCTTGTGTTTTGGTCTATCTTGCTGGCCTGGACTTGGATTGGGCTATGTGGGC TGCACAAGGTGGATACTATATCAGAGAGAATAACAAGACTGTGGAAGAGACTTTTGGTGTGTGGAAGTCTGATTTTAGCA CACTCAGATACCCACAGTTTAATCAAAGGTTTCAGCTTGTGCAGAAGAAGCTTTTAGAACCAAGTTCAAATTCAAGCAAG TCCTTGATAATGTACCACCCACGAAGTGGGCAATGTGTGAAAGTTAACGAGAACAATGAACTTGAATTGGACGATTGTGA GGGGCAGAGTAGGTGGTGTCTAGAAGGACAACAAATCAAACTGGAGGGCAATGGCACCTGCATAAAAGCAATTGGTGATG GATCTCCAGTGAAGCTCTCAAATGATTGCAAGAGTAAGCAAAGTTCTTGGAAGTTTAAGTCAGCAACCAATCTTCATTTA AGTACCTTGGATGGACATGGTCAGAACTTGTGCTTGCAAAGGGAATCCACCATTTCACCTAAGATTGTTACCAGGAAATG CATCTGTGTGGATGATGATCCTACTTGTTTGGACAACCCTCAAAGCCAGTGGTTTCAGCTTGTTACAACTAATGTGTAA
Protein sequence (LotjaGi1g1v0509200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKSKPLCLFSLLAFSLFASLSHSLPLSTNKRWIVNDESGERVKLHCINWSTHLNAMLPEGLDKIPLNVFIAQMKEHGFN CVRYTWATHMFTRYGDHKVGETLDSLMIHRVRLGLRKHNPYYENITHIEAFDAMIDQFGKQGMMVVADNHVGEPRWCCGE KDGNAFFGDRHFNPQEWLQGLSIVAKRVKGKPQVVAIGLRNELRGPNQNANDWYKYMTQGATTVHKANPNLLVFVSGLSY DTDLSFLKTRPLNIDIGNKLVYEVHSYSWSSGSREAWIEEPLNQKCAKVLNGLNEKAGFLMDGPNPRPLIMSEFGMLMSN TDEKSHRFMSCVLVYLAGLDLDWAMWAAQGGYYIRENNKTVEETFGVWKSDFSTLRYPQFNQRFQLVQKKLLEPSSNSSK SLIMYHPRSGQCVKVNENNELELDDCEGQSRWCLEGQQIKLEGNGTCIKAIGDGSPVKLSNDCKSKQSSWKFKSATNLHL STLDGHGQNLCLQRESTISPKIVTRKCICVDDDPTCLDNPQSQWFQLVTTNV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 19 | 19 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 3 | 532 | 530 | 6.0E-291 | – | |
| PANTHER | 3 | 532 | 530 | 6.0E-291 | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| Phobius | 19 | 24 | 6 | - | – | |
| Phobius | 25 | 532 | 508 | - | – | |
| Gene3D | 25 | 390 | 366 | 1.3E-74 | – | |
| SUPERFAMILY | 25 | 382 | 358 | 6.77E-57 | ||
| Pfam | 66 | 348 | 283 | 2.1E-22 | ||
| SUPERFAMILY | 400 | 507 | 108 | 4.45E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0509200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…