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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0510400 |
| Transcript ID | LotjaGi1g1v0510400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Expansin; TAIR: AT5G39280.1 expansin A23; Swiss-Prot: sp|Q9FL79|EXP23_ARATH Expansin-A23; TrEMBL-Plants: tr|A0A151TCF6|A0A151TCF6_CAJCA Expansin-A22; Found in the gene: LotjaGi1g1v0510400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102966960..102967654) extracted from Lotus japonicus Gifu genome v1.2.
AAGCACCGCACTATTCAACAATGGGCTTGCATGTGGTTCATGTTATGAGATCAAGTGCGTCAATGACCCCCAATGGTGCA TACCGAACGTGCGCCCAATCAAAATCACGGCCACAAATTTTTGCCCTCCCAATTACACCAAAACCGAAGGCGTTTGGTGC AACCCGCCACAAAAACACTTTGACTTATCAATGAAAATGTTCACCACAATCGCCATTTACAGAGCTGGGATCATCCCGGT TCAATATCGCCGCGTTCCATGCATGAAAACCGGCGGTGTCAAGTTTGAGCTCAAAGGAAACCCTTATTGGTTGCTTGTTT TGGTGTATAATGTTGGGAATGCCGGTGATGTTGCTAGCGTGAGCATCAAAGGTTCCAACACTGGATGGCTTTCAATGAAA CGCATTTGGGGGCAGAATTGGAATACCGGAGTTAATTTGGTCGGACAATCGTTGTCATTTAAGGTTATTACAAGTGATGG TAGAAAGTTGTACTTTATTAATGTTGCTCCTCCCCAATGGCAATTTAGACAATCATACGAGGGCAAGAAGAATTTTTAGA TGTTGTTGCAGTCTCTGATGGTACCGTTTCAATTCTAGTCATTTGTTTAGTTTTAGAGGCTTGTGATTTCCTCTATTGCT AGAATGACTTCTCAGTTCTCAGTGTAATTGCAGAATTAACACGTGACAATAATTT
CDS sequence (LotjaGi1g1v0510400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAATGTTCACCACAATCGCCATTTACAGAGCTGGGATCATCCCGGTTCAATATCGCCGCGTTCCATGCATGAAAAC CGGCGGTGTCAAGTTTGAGCTCAAAGGAAACCCTTATTGGTTGCTTGTTTTGGTGTATAATGTTGGGAATGCCGGTGATG TTGCTAGCGTGAGCATCAAAGGTTCCAACACTGGATGGCTTTCAATGAAACGCATTTGGGGGCAGAATTGGAATACCGGA GTTAATTTGGTCGGACAATCGTTGTCATTTAAGGTTATTACAAGTGATGGTAGAAAGTTGTACTTTATTAATGTTGCTCC TCCCCAATGGCAATTTAGACAATCATACGAGGGCAAGAAGAATTTTTAG
Protein sequence (LotjaGi1g1v0510400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKMFTTIAIYRAGIIPVQYRRVPCMKTGGVKFELKGNPYWLLVLVYNVGNAGDVASVSIKGSNTGWLSMKRIWGQNWNTG VNLVGQSLSFKVITSDGRKLYFINVAPPQWQFRQSYEGKKNF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 122 | 122 | 1.8E-57 | – | |
| PANTHER | 1 | 122 | 122 | 1.8E-57 | – | |
| SUPERFAMILY | 2 | 28 | 27 | 6.8E-5 | ||
| PRINTS | 4 | 17 | 14 | 4.0E-33 | ||
| PRINTS | 12 | 28 | 17 | 2.3E-15 | ||
| SUPERFAMILY | 26 | 118 | 93 | 2.75E-32 | ||
| Gene3D | 27 | 122 | 96 | 3.4E-23 | ||
| PRINTS | 28 | 40 | 13 | 4.0E-33 | ||
| Pfam | 30 | 107 | 78 | 2.9E-23 | ||
| ProSiteProfiles | 39 | 118 | 80 | 20.614 | ||
| PRINTS | 40 | 61 | 22 | 4.0E-33 | ||
| PRINTS | 66 | 80 | 15 | 2.3E-15 | ||
| PRINTS | 75 | 96 | 22 | 4.0E-33 | ||
| PRINTS | 104 | 120 | 17 | 4.0E-33 | ||
| PRINTS | 104 | 118 | 15 | 2.3E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. | ||
| Biological process | Plant-type cell wall organization | A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. |
Expression pattern of LotjaGi1g1v0510400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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