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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0511400 |
| Transcript ID | LotjaGi1g1v0511400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BED zinc finger and hAT dimerization domain-containing protein; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|Q6AVI0|RSLE2_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 2; TrEMBL-Plants: tr|A0A151R6M7|A0A151R6M7_CAJCA Putative AC transposase; Found in the gene: LotjaGi1g1v0511400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:103315197..103319993) extracted from Lotus japonicus Gifu genome v1.2.
CTGCCGTTGAACTCTCACTCTCATTCTCTCTCTCTCTCACTAAGCGAATGGATGTTGCTGCTGCGTAAAAAACCCTAGCG CCGTCGCCCTCCCTCCATCACTCATCTTCTCATCTTCTTCTTTGGTGAGTCGCAATCCCTCTCTGTGTGAGACCTTGCTG GCCACTGCTTCCTTTTCCTTTCACTGCTCTCTCAAGCTCGTGATCTGACTTGCTCGTTTGTTTTTGTTTGTAGGTCGTGT TAAATCCCTGGAATAATTTGGCACCCCACCAAGGAAGCAGATCTGCTCTAGTAAGTTCCACCCTCCTCTAGTAAACATAT ATGCAGGTGGAGGACTTTTTTATTTTCTCTAAGGATCAGTGTGTGTAGTGATTGTGAGGGTTAGGGTATTTGAAAAATTA GATATTTGCGGAAACAATGGTATATACATTCGTTTTTTCTTTCTGCTATTTCCCTTGGCTGTTGTTATGTTTCTCATTTT CTCCCTTCTGTTTGTTTTTTCTCTCTAGCTCGTTTTATTAGTGGTCTTTTATACCACTTTATCTTATGTACTTTGACTTT GCTGATGCTTTTCCAACTTTTAGTAATAATATTCTCCTTTGTTTCTAAAAAAACGTGAGCTTCTCAAGTTTTTCCTTATT TGGGTAGCCAAAAGTTTTTGTCTTGGAACATTTTAGTTTAATGGTGACTGTTTTGACGTCTGCAGCTAAGTATCTTAGCC TACATGCTATCTTTTATTTTCCTCTTTTGCTTTTTTACTATAAATTTTTGGTAAAGCTAGCAGATTTGGGGACTGTTTTA CAGATTAGCCAAAGATCTTTTAGGAGTTGGTAATCAAAACATTGTTAAGATTATTGCAGTGTTTTTTCATGTTAGTAATC CACTTGGATATGCCTATTTTCTTATTTTGTGTAAATTTTAATGTTAATTTTTCTTTGGTAAATGTTAATTTGTCTTTGGT GAATGATACCTTATACAGTGATAACATGAGATTTCTGTTTCTTAGTCTGTTGCTATGCTATTTCTGTTTTTTATGGGGTG GTTTTATGAAGTTGTTAATGAAAAGTACTAGTTCCTTTGTTTTGCAAAGTGTGTTTCTAATTTTCTATTTTATTTATGAA TCACTTTTGTTAACCTTTTTGTGTTATTTGTGATATGGGACAGTCATGGAGCAGCCTAATCAAAATTTGCCTAACATAGT GCCTGAACAAACAATAGGAGGTCGTGGAGATCAGCCGATTAACCAGCCAGCCGTTGCAATTGAAGCTGGTGGAGCTGAGC CTGCTAGAGCTGAACCAGCCCTTCCTCCTATTCCAGAAACTCGTAAGAAGAGGAAGCCAAATGCAAGTGGTTCTAGAAAA CAATCACCCTCATGGGACCACTTCACGAGAGTGCCTGATCATGAAGTTCAAGATCCCACTGCTGCATGTAATTATTGTGG TAAGAGATATCTCTGTGATTCTAAGATTCATGGTACATCAAATCTGGGTGCTCATACTAGAGTTTGTCCCAAATATCCTT ATGCTGTTATCAATGACTCTAGTCAAACAGTCCTATCTTTTAAGCCAGGAGAAGGTAATGATATGGTTGCAGCGAGTCAA AGGTTCAATCTTAAAGCATGTAGGAATGCAGTTGTCATGTTTGTTGTCTTAGATGAGCATTCATTTTCAAAAGTTGAGGG TGATGGGTTTAAGATTTTGTGTAGAACACTACAGCCACAATTTACTGCCCCTTCAAGGCAAACAGTTGCTAGGGATTGTT TCCAACTATTCCTAGATGAAAAAGTGAAGTTAAAAAAATTCTTTAGAACTGAGTGTAGGAGAGTTGCCCTTACCACTGAT TGCTGGACTTCTTGTCAAAACACTGGTTATTTGACCTTAACTGCTCATTTTATTGACAATGAGTGGAACTATCAAAAGAG AATCATTAGTTTTGCCGAAGTTATCAACCACAAAGGGGATACCATAGGTAGGAAAATAGAAGAGATTTTGAGGGATTGGG GACTAAGGAATGTTTCCACTATCACAGTTGATAATGCCTCATCAAACGATGGTGCTGTGTCTTATTTAAAAACAAGATTG AAAAACTTCAATGGGCTTGTGTTAGATGGACAGTTCCTCCATATGAGGTGTTGTGCTCACATCTTGAACTTAGTAGTAAA TGACGGGTTGGTAGACCTCAATTCCTCCATTAATAGCATTCGAGGTGCTATTAGGTTTGTGAGGTCTTCATCACAAAGAA AAAATAAGTTTAAGGAGTGCATCCAATTTTCCAATATTTCCTCCAAAAAACTTGTGTGCCTTGATGTTCCAACTAGATGG AACTCAACATATCTAATGCTAGATGCTGCGGAGAAGTTGCAAGTTGCATTTGAAAAGATTGAGTTTGAGGATCGTAACTA TGTTCTGCACTTTGACAAACCTCTAACTCCCCCTAAGAGTATTGATTGGGAGAATGCAAGAGCATTTGTAAGATTTCTTA AGATTTTTTATGATGCCACCAAAATTTTTTCAGCATCTGTGCATTTAAGTATCCATACTGCCTTTCATCAACTCTGTTTC ATTTATACTGAAATCCTAAATTGTATTGCGAGCCCAAATCCTGTGTTGAGTAAAATGGGTCAAGAAATGAAGAAGAAGTA TGATAAATATTGGGGTAATGTTGAAAATATGAACCAGCTTCTATACTTCGGTGTGATTCTTGACCCCCGTAACAAGTTGA CGTATGTGGAGTGGTCTCTTAGAGAGATGTATCCTGATAACCCGAATTTGGTGAGGCTCTTGTCTGAAAGTATCAAGGAA AATCTGGGTAGAATGTACTCTTGGTATTTGGCAGCACATGAGCAGTCTATTAGGGGTAAACAACAGGCTAATGAAGAAAG TTCAGGTGGAGACAAACCTGTTGCTGCTGAAGCGCCATCACACGTGGCTAGGAGAGCTGCCTTTTTACAACATTTGAAGG AAAAAAATTCAATTGAGGAAAGAAATGAGCTGGAAAGGTATTTGGGTGAAGCTATTGAGAAGTCGGAAGAAAAATTTGAT TTACTTTTGTGGTGGAAACATAATAGCTCTCGATTGCCCGTATTATCAATGATGGCTAGAGATGTTTTTGCCACACCTGT TTCCACTGTGGCATCAGAGAGTGCTTTTAGCGCTGGTGGTAGGGTCATTGACATATTTAGAAGCTCTCTTTCCGCAGAAA TGACAGAAGGACTAATTTGTACTCAGAATTGGTTGAGGCCTTGTCGCTTCCAATTCAAAGATCTTGATTTGAGTGATGAG CTTGAAGAATCTGAAAACATTGTGGCTGGTATGTTTTTCAAATTATATTCGTCATTTGTAGTTTTTTGTGTTGTTCAGTC TCTTGTATTTTATACGTTGTTTGTCATTGTTTTCAAGAATTGCTAAAACTTGCTGGAACAACAATTGGAGATGGAGATGA TGGTCAATCATCTCAATCACAGCCTATGCGCTGTGATTGATAATTTATTGAAGTGTAAGTTACTGTTTAGTGTTTACTTC ATTTTTAAGTTCTCTCTCAGTTTTTAAAACATGCACTTATGACTTGGATTTTTTCTGACATTTTATGCAGTTCTATGACT TTTTTGGCTTTTTTGGAGTCTTGTATAAGACATGACTCACTTAACCTGTTTGCATGACAATCAAGAGTCTTTTTGGGAAC CTGATTTTGGATCTCTAAAGACATCACTCAGTTGTAGGCCGCATTGCTGGATTTGTCTCTTTTAGTGCAATACTTCATTT TCCTTGTAATGATGTAAATCATCTAATTTCTTTATGAAAATCTGTTTTGTTGCTGAAATTTTGGTTCCTAAAATATTTCC TTACCTTGTTGCTGAAATTTAGGTTGAGTTTAAACATCCCCATTTGTGGAAGCTGTTGCAAGTAAGGAACTCCATCTTCA AGCTGGAATGTAAAGATGAATTAGGTAATAATGTAAAGCTGAATTACACAATAGACATTCCCATTGACCTTCTATCATTT GATTTACTTAAGATGCTTGATTGTGTAGGTTGGCCATGATGCTTATATTAACCAGCAAAGCACTGATTCTGGGGGCGAGA ATGACTTGGCTTCAATTCTTTTAAGCAGATGTTCTGTGATCATGTAATGCCTTACAAGTTTCTTCCCTCTATTTTGTTAA TCATGTCTTTGATTGAAATGTTGGTCTGCATTGTAGTAGAAAATCTTATTGATCTCTTCTTTCAGACTTTCATGGAACTG TCTTTCATGGAAGCTGTCCAAGGGTGCACCAATATTGGCATTTCAAACAGAGGCTCTTTGCAATACTTGTGGTATGCTTG TTAAGCTATGAATTTTGAATATGTTTGATTACTTGTTATGGAAGTGTGGTGAATAGCTTAAGTTTAAGTCGTTATGAATT GAATTTATGACTGTTCTTTGCATGAATACTATAATTTATTAACTCAATTTGCATTGTTGAAGGAAAGATGGAAGGTATGA AATTGGCTGGGCTTGCAATGGAAAAAACAAGGAACAATGAAAGTGACACTTGGAGATGAAGAAGGAACAATCTAGTGGCC TTGTTGAAGGAGGCTTACCAAATATCCAACTGATGTCTTTAAATCATTTGTGGCACTGAAAAAACTAATGCCATGCTATT TGAATTTATAATTGTAACTATTTTTAAGTACATTCCTTGATTGCAGCAGGTTGTGGAACTAATGATCCATTATTACCTTG TTTAAAATGTTTCTATGCTCTTTGAATTTGTAACTATTATTAAGTAAATTCCTTGATTGCAGCAGGTTGTGGAACTA
CDS sequence (LotjaGi1g1v0511400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCAGCCTAATCAAAATTTGCCTAACATAGTGCCTGAACAAACAATAGGAGGTCGTGGAGATCAGCCGATTAACCA GCCAGCCGTTGCAATTGAAGCTGGTGGAGCTGAGCCTGCTAGAGCTGAACCAGCCCTTCCTCCTATTCCAGAAACTCGTA AGAAGAGGAAGCCAAATGCAAGTGGTTCTAGAAAACAATCACCCTCATGGGACCACTTCACGAGAGTGCCTGATCATGAA GTTCAAGATCCCACTGCTGCATGTAATTATTGTGGTAAGAGATATCTCTGTGATTCTAAGATTCATGGTACATCAAATCT GGGTGCTCATACTAGAGTTTGTCCCAAATATCCTTATGCTGTTATCAATGACTCTAGTCAAACAGTCCTATCTTTTAAGC CAGGAGAAGGTAATGATATGGTTGCAGCGAGTCAAAGGTTCAATCTTAAAGCATGTAGGAATGCAGTTGTCATGTTTGTT GTCTTAGATGAGCATTCATTTTCAAAAGTTGAGGGTGATGGGTTTAAGATTTTGTGTAGAACACTACAGCCACAATTTAC TGCCCCTTCAAGGCAAACAGTTGCTAGGGATTGTTTCCAACTATTCCTAGATGAAAAAGTGAAGTTAAAAAAATTCTTTA GAACTGAGTGTAGGAGAGTTGCCCTTACCACTGATTGCTGGACTTCTTGTCAAAACACTGGTTATTTGACCTTAACTGCT CATTTTATTGACAATGAGTGGAACTATCAAAAGAGAATCATTAGTTTTGCCGAAGTTATCAACCACAAAGGGGATACCAT AGGTAGGAAAATAGAAGAGATTTTGAGGGATTGGGGACTAAGGAATGTTTCCACTATCACAGTTGATAATGCCTCATCAA ACGATGGTGCTGTGTCTTATTTAAAAACAAGATTGAAAAACTTCAATGGGCTTGTGTTAGATGGACAGTTCCTCCATATG AGGTGTTGTGCTCACATCTTGAACTTAGTAGTAAATGACGGGTTGGTAGACCTCAATTCCTCCATTAATAGCATTCGAGG TGCTATTAGGTTTGTGAGGTCTTCATCACAAAGAAAAAATAAGTTTAAGGAGTGCATCCAATTTTCCAATATTTCCTCCA AAAAACTTGTGTGCCTTGATGTTCCAACTAGATGGAACTCAACATATCTAATGCTAGATGCTGCGGAGAAGTTGCAAGTT GCATTTGAAAAGATTGAGTTTGAGGATCGTAACTATGTTCTGCACTTTGACAAACCTCTAACTCCCCCTAAGAGTATTGA TTGGGAGAATGCAAGAGCATTTGTAAGATTTCTTAAGATTTTTTATGATGCCACCAAAATTTTTTCAGCATCTGTGCATT TAAGTATCCATACTGCCTTTCATCAACTCTGTTTCATTTATACTGAAATCCTAAATTGTATTGCGAGCCCAAATCCTGTG TTGAGTAAAATGGGTCAAGAAATGAAGAAGAAGTATGATAAATATTGGGGTAATGTTGAAAATATGAACCAGCTTCTATA CTTCGGTGTGATTCTTGACCCCCGTAACAAGTTGACGTATGTGGAGTGGTCTCTTAGAGAGATGTATCCTGATAACCCGA ATTTGGTGAGGCTCTTGTCTGAAAGTATCAAGGAAAATCTGGGTAGAATGTACTCTTGGTATTTGGCAGCACATGAGCAG TCTATTAGGGGTAAACAACAGGCTAATGAAGAAAGTTCAGGTGGAGACAAACCTGTTGCTGCTGAAGCGCCATCACACGT GGCTAGGAGAGCTGCCTTTTTACAACATTTGAAGGAAAAAAATTCAATTGAGGAAAGAAATGAGCTGGAAAGGTATTTGG GTGAAGCTATTGAGAAGTCGGAAGAAAAATTTGATTTACTTTTGTGGTGGAAACATAATAGCTCTCGATTGCCCGTATTA TCAATGATGGCTAGAGATGTTTTTGCCACACCTGTTTCCACTGTGGCATCAGAGAGTGCTTTTAGCGCTGGTGGTAGGGT CATTGACATATTTAGAAGCTCTCTTTCCGCAGAAATGACAGAAGGACTAATTTGTACTCAGAATTGGTTGAGGCCTTGTC GCTTCCAATTCAAAGATCTTGATTTGAGTGATGAGCTTGAAGAATCTGAAAACATTGTGGCTGAATTGCTAAAACTTGCT GGAACAACAATTGGAGATGGAGATGATGGTCAATCATCTCAATCACAGCCTATGCGCTGTGATTGA
Protein sequence (LotjaGi1g1v0511400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEQPNQNLPNIVPEQTIGGRGDQPINQPAVAIEAGGAEPARAEPALPPIPETRKKRKPNASGSRKQSPSWDHFTRVPDHE VQDPTAACNYCGKRYLCDSKIHGTSNLGAHTRVCPKYPYAVINDSSQTVLSFKPGEGNDMVAASQRFNLKACRNAVVMFV VLDEHSFSKVEGDGFKILCRTLQPQFTAPSRQTVARDCFQLFLDEKVKLKKFFRTECRRVALTTDCWTSCQNTGYLTLTA HFIDNEWNYQKRIISFAEVINHKGDTIGRKIEEILRDWGLRNVSTITVDNASSNDGAVSYLKTRLKNFNGLVLDGQFLHM RCCAHILNLVVNDGLVDLNSSINSIRGAIRFVRSSSQRKNKFKECIQFSNISSKKLVCLDVPTRWNSTYLMLDAAEKLQV AFEKIEFEDRNYVLHFDKPLTPPKSIDWENARAFVRFLKIFYDATKIFSASVHLSIHTAFHQLCFIYTEILNCIASPNPV LSKMGQEMKKKYDKYWGNVENMNQLLYFGVILDPRNKLTYVEWSLREMYPDNPNLVRLLSESIKENLGRMYSWYLAAHEQ SIRGKQQANEESSGGDKPVAAEAPSHVARRAAFLQHLKEKNSIEERNELERYLGEAIEKSEEKFDLLLWWKHNSSRLPVL SMMARDVFATPVSTVASESAFSAGGRVIDIFRSSLSAEMTEGLICTQNWLRPCRFQFKDLDLSDELEESENIVAELLKLA GTTIGDGDDGQSSQSQPMRCD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 77 | 77 | - | – | |
| PANTHER | 55 | 529 | 475 | 2.8E-129 | – | |
| PANTHER | 55 | 529 | 475 | 2.8E-129 | – | |
| ProSiteProfiles | 64 | 121 | 58 | 10.191 | ||
| SMART | 64 | 117 | 54 | 4.7E-10 | ||
| Pfam | 67 | 110 | 44 | 1.5E-5 | ||
| SUPERFAMILY | 67 | 121 | 55 | 2.06E-6 | ||
| SUPERFAMILY | 151 | 200 | 50 | 1.96E-5 | ||
| SUPERFAMILY | 209 | 691 | 483 | 9.86E-73 | ||
| Pfam | 449 | 551 | 103 | 1.5E-17 | ||
| Pfam | 608 | 690 | 83 | 9.3E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0511400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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