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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0513200 |
| Transcript ID | LotjaGi1g1v0513200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein, putative; TAIR: AT5G60980.2 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein; Swiss-Prot: sp|O94260|G3BP_SCHPO Putative G3BP-like protein; TrEMBL-Plants: tr|I1KWF6|I1KWF6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0513200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:103523591..103529523) extracted from Lotus japonicus Gifu genome v1.2.
CTCATATGTTAACTGTTAAGTTTCACACACAATGAGTTTGCTAACTTGGGAACTAAACCAAACTAAGACATCCAATGATT CGTTTCATTTTCACATTTTTTTTATCCCAGTATGAGAAGAAACCTGACCCAAGATGATAACTTCACACTGAGTTTCACCC TTTCACTCATCACAGTCACACACAGGTAGCTTTCGCACACTTCCATTTTCTCGTGCGCAAACTGTTCCCGTTGGTCTCTT CCCTCTGCACCACACTTCGCTGTGTTTCTCACAACACTCACACTGTGCCATTTCTCACCTTCTTCACGATCACAACCCTT CACCACCACCAACAATAACAACACATTCTTCAGGTACTCCACATTTGTTTTTCTCAATAATGGGTCATCATTTTTTTCAA CAAAGTTTGTTTCTTTCCCTCTGTTTTCAACCAATTCCTTGATTTTCACAAATGGGTAATGTTCGTTTTATGTTAATGTT TCGAAAATGGCATCTTCATTTTTAGTAATGATCAGACATTGTTGGTGCTGTGTGTGGTAGCAGCTTAGTAATTGTGAGAT AGTAGTTGAAGTGAAGTGTGTTTGTTTGTGAAGTTTTGTTCTTTTTGTTCAAGTTTGATTCTTTTTTTCGTTGCTTATTG TTGTTAATTCGGTTGCTGTGAGCTATGAAGTCAAATGGTTGTTGTTTGTTTTGTTCTATGAGGTCGGTTTAGGGTTTAGA TTTGAGATTTTTGTTTCTCTTTGGATCTGTGGTAATGTGCTGAGGCTAGTGAATGATGCAATTAGACGTTTTGATTCTTG TGGTTTGTTGTATATGATGAATTAAGCTGGTCTAACTTCATTTTGTGAATGTGGATGATTTTGTTGTCGTTTTCTATTTC ACCTTTGTCTCTGAGTTAGATTGTTTCTTTCATATCTCCCTTTCATTGGGGACAGGACACAAGTTATTCTATTTCATTTT GAAGATTTTAGCTATGTGAATGAGATTATTTTTCAATCCATGCTTAGTCAACTCCAATTTCCATCAGTGTTATAGGTCTG CATTAAATGTGTTGCTTTTCTTGCATTAAATGTTGCTTGCAAAACTGGATACAAATTGTATGTACCTGTTATTTATCTCT ATTACTTTTTCCAAGTGGCCATAAAATTAAAAGATTAATAATCAAGGTCAGTTACTTAAGCATAAGAGCTAGGATTAGCG TCTAATTAAACCTTCTTGAAGAGGCCATTTAGATCTAAATGATAATCAATGCCTATCTGTTAGACTTTTATGTGTTTATA AATGTTGTCAAGTTTCAAATATTGATCAGTTGGTTTTTGACAGATGGCCTCGGAAACCGCTACTAATTCATCTGCTCCCA GTCCCCAACTGGTTTGCAATGCCTTTGTTGATCAGTATTACCATATTCTTCACCATACGCCAGAATCGGTCTATCGGTTT TACCAGGACTCTAGTGTGGTGAGCCGTCCAGATTCCAATGGTGTGATGACATCAGTTACAACCATGAAAGTAAGTTTCCT CATGCAAAACTAGGAACACTATAACTTACTTTAAATTTTCTGTAGAATATTTCTGAGGTTCCATATTCAAAAAGAAGAAA CATTTTGAAATATGAAGCAATACTTTGAATTACTAGTTATATAATTTTCAACATGCTCCTAGATATTGATGTCTGATAAT TCTTTTCTTTCCCATGCAGTCATATTATATTTTTCATGCAGCTGCTAGGAATCTACTTCTATTTACATGGGTTTCACAAA ATAGAGAAAACTTAAACGTTTAACCATTTAGATTGCATTTGCTGCTGAAAATGTTTCATTGATATATCTCAGGCTCTCTG CTGTTCTCTAATTTTAAGGGAAAATGCCATCTTTTTATGGTGCAGGGAATTAATGAGATGATTATATCACTAAATTTCAA GGATTTTAAAGCAGAGATAAAGACTGCAGATGCTCAAAAATCTTACAAGGAAGGGGTGACTGTGCTGGTGACGGGATGCT TGACTGGAAAGGATAACTTGACTAGAAAATTTGCACAATCTTTCTTTCTTGCCCCACAAGAAAATGGCTATTTTGTTCTG AATGATGTGTTTAGGTATTTCGAAGACTCTGAACCATCAGAACAGCATCCAGTTGATGAAGATGTTGATGAAGCTGCTGT TACTGAAACCCCAGAACCAGGCACGATTGATTTAAAAGGAACATGTCTTCTATTATAGAAATTATTCTGGAGTTATATTA ATGCTTTTAACATTTCATTGCAGAACCCGGTTATGCTGTCGACCCTCCTGCACCGGAACCTGTGAATTCTCATGTGAATG AGAGCCAAATTATTGCTGATAAAGCTTCTGAGCTACCAAACCATCCTGAGGCACAGATAGATAATGGAAATAAAGACAAT GTAGAACCTCACATTCAGTCAAATGGGAATGATAATTCTCAGGCCACAGAACAGGCTTCCTCAGCTCAAGTGGATGCTCC GAAGAAGTCTTATGCATCAATTGTGAGTATTGCTACAAGTCTTTCACTTGCAAGTACTGTTTTTATCCAACCTTCGAAGC TTATTAGATTCGTTGTAGGTGAAAGTCCAAAAAGGGATTTTGGGACCAGCTAGAGCCTATGTGCCTACTAATACTTTAAA GACAGTGCCTAACAAAACTGAGATCCCGGTAGTTGTGTCGGAACAGTCTGCTGCTGTACCTCAAGCTGCACAAGATAGTA TTGGCAAACCTGAAGCTGAAAGTAGTGATACTCATGAGGAAGGTAGATGGTCTTTGTTACATTTTTCAATTTTTTTTTTC TTTTGAAGTTTGAATAAAACAAATTTTAACACAGCTAACCATTTAGTTTTCTAAAGTCATGTCATGAAATTGGTAAATTC AGCCAAAATATCTGGCTTAAACATATTTCTGCTTCTAATTAACATGTTCTGTCTCCAACAGTTGAGGTTTACTCCATTTA CGTTCGAAATCTGCCCTTCAATGTGACGGTTGCTCAGTTGGAAGAGGAGTTTAAGAAATTTGGATCCATCAAACCAGGAG GCATCCAAATCAGAAATAATAAGGTACTTATCAGGTCGATAAAGCATCAAATTACCCTTTTCACTTTCTATTCAGTCCTA ATGCAGTTTTGTTGGAAACACTTTGTATTTTCCTTTGCAGCCACAGGGATACTGTTTTGGCTTTGTTGAGTTCCTATCTC CAAATGCAATGCATAGTGCAGTTAAGGTACACTCCCCATCAGTATAGTTTAGATTCCTAGAATTTGGCACTTCATCATGC AAGTTAATTATATTTACTAGGTTGGAGATGATTTCAAAAGTGATAGTAATTTCAAATTGGGTGCAGTTATATCATTTATA AATCTGTCACTGCTGCCAACAAATTGCAATGTTTTGGCACAGTAAAAATTATATATATTCTTCAAATCATATTCTTGGTA GTGCATAACTTCTACATCTAGCTGGCCATACAGTCTGTATAGTGCACATGTTTAAGGTACTTGAATAAGTTATATCCCAT TTTAACAGGCCTTGAACACCAACATGAGAAAAATATTTTTCATCCATCTTAACTATCAAACCTATCATTTTCGCCTGGTT TCAAGGGGGCTTAGTATAAGATTTTCTAGTTCATGGTGTGTTGAATCTCTACAACCTCTTAGGTTTAGGGAGATGGTATA TTTTATGCAGTATATTTCTTTAACTGTTGATGTCACTTATTTTATCACCCGGTGAATTGATTGCTGTCCCTCTGGCATAA CCACCTCACCAAAGTGATCAAGCAAGTGAGACTAGTTGGAAGGGTAGAAAAAAAGAGCTTCTAGAAAGAAAATGAGTGCT TCTCTGGAAAGGGAGTTTTCATCTAATTCATTTTTTTCCCATTCCAGTTCCAGGATGGCCCAGGCCGCAATCGGCAAAAG CAAAATTACCTTACTTATTTTAAGAATATAATTCTTTCGTTCTGCTGTCTTCCCTATGAATTTGTAGATGTGTATAACTC TAACTTAAATAAAACTCTTTAATTTCATTACTCTAGAATGTATTTAAATTTTGGACTTCCTTGTGTAATCTTCTTTGCTA CTAGTTCATGATTTAGAGATGAAATGTGACTTGGGAGATAATGACCACTCCCTTAACTTTTTTTTATAGGCAAATGTTAG TTGTTATTTGTTAATTGTTAGTAAATTAGTTCCTTCGCCAAGATTTGAACCCTGACCCTTTACCCTGCAATCCCTTCATA TCCCTTAGCTTACCAAGTGAGCTACCCTTCCCCCTAAAACTGTTGAGAAGTCTCACATTGACTAGAGATATGGCCAAAAT ACCTTATCTGGTAGAGCTACCCTCACCCCTAATCTAGCTTTTAGGGTAGAGTTGTGTATAACTCGAATTATAAAATGGTA TCAGAGTCTATCTTAGATCCGTTTATTGGACACCACCCATATAAAATCCACCCAATGATGTTCATTCCTTTAAATCTCAT GCTCTAGATGTCCAGGCCTTGGCGTGAATGGGTGTGTTGAGAAGTCCTACATTGACTAGAGATATCGCCAAAATAGTTTT TATGAAGGGTAAAGCTAGGCCTAAGCGAACTCTAAAAAAAATGATAGAATTCAGCTCTGTCCCATCTTCAATTGATTGGT TGGAATATATCTAAGTGCTTGTAGTGTATTACCCATGTAGGAAATTAGTATCATTACTTTCATGCATTCGATGACATGTG AATGTCCAATAGACAGGCTTCAAATGGAACCACCGTGATTTCTGATTTTCTTGATGTCTTCTTGTGGTGGGAAGATTGCT ATAAAATTATCCTAGCTAGCTTGATAATATTAGCCTGCCTTTCTTGTCAAATATTACCTGCAAATCATTGATTTCCTTGA AGGGGAAAAGAGTAAAGCAATCATCCAGTTATTGTAACTTGTATTGCCACATCATTCTAGCTAATTATATGTTCTGTCTA AATGTAATTTGATGGAACTCCCATCATCTTCTTTTTCATTTGTTACTTCTAATTTGATGTGAAAATCTTCAGATCTTTGT TCATTATTTAAGTCAGTTGGTTTGCTTTCTCAGGCTTCACCTGTTACTATTGCTGGGCGTTCTGCTATAGTTGAGATGAA GAAGACCACAGCTCGAGGTAATTCAAAGCTAACTTGTACAACTAAAACTTGTGTCATTCATTCAATAGGCGAAAATAATA GCTGATTTGATAATCAAATTAACTCCATTATAGTTAACAATTTTATTTGTTCTCTCTCAGTTGGTGGTGGTCCTGGAAGA GTTAGGATTTCACCCGCAAGAGGTGGGTTTCGAAATGACTCTTTTAGGGGTCGTGGGAACTATGGTGTTGGCGGTCGGAG CTTTGGTCGTGTTGATTATGGAAACCGTGGTGGTGACTTTGGCGGTCGAGGCCGCGGGCCTGGCGGACATGGAGAAGGTT ATCAGCAAGGGAGAGGGAGAGGTGGCAGTGGCAGGTTCGGTGCAACAAGACGAGATGTTGTTCCCAACTGAAATAGAATG ATTTTTTAGATGTTGTTCAAATATCTTTTCTGGTAGGTTACAACCTCAGTTTCTCATATTACTTTCTCTGAATTTGCACA GTTGTAGTATTTATAGATATTTTATTGCTATGATCCTAATAGGTATAGCCAATCGAAACAGGTACTATCTCCGGAGTTGA CATTAGATTAAACATCGTTTTTTGTCTTTCTATGATGCAACATTTCTGTGTCCAAATTGGGATGTTTATTTTGAAAAGGT TATAAACTTCATTTATTTAAGTCTGCTCTATGTGACCATTTCGCCTCATTTACATAGTGTGTTTGGACTAGTTGAGTTAA CCTGAAAATACTTTCATCGTAGTTCATATGAAGAGTTATGCTTACTTTTTATCTTTATGTAAGTGTTAACATCCGTTAGC ACTAGCTTCAACG
CDS sequence (LotjaGi1g1v0513200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTCGGAAACCGCTACTAATTCATCTGCTCCCAGTCCCCAACTGGTTTGCAATGCCTTTGTTGATCAGTATTACCA TATTCTTCACCATACGCCAGAATCGGTCTATCGGTTTTACCAGGACTCTAGTGTGGTGAGCCGTCCAGATTCCAATGGTG TGATGACATCAGTTACAACCATGAAAGGAATTAATGAGATGATTATATCACTAAATTTCAAGGATTTTAAAGCAGAGATA AAGACTGCAGATGCTCAAAAATCTTACAAGGAAGGGGTGACTGTGCTGGTGACGGGATGCTTGACTGGAAAGGATAACTT GACTAGAAAATTTGCACAATCTTTCTTTCTTGCCCCACAAGAAAATGGCTATTTTGTTCTGAATGATGTGTTTAGGTATT TCGAAGACTCTGAACCATCAGAACAGCATCCAGTTGATGAAGATGTTGATGAAGCTGCTGTTACTGAAACCCCAGAACCA GAACCCGGTTATGCTGTCGACCCTCCTGCACCGGAACCTGTGAATTCTCATGTGAATGAGAGCCAAATTATTGCTGATAA AGCTTCTGAGCTACCAAACCATCCTGAGGCACAGATAGATAATGGAAATAAAGACAATGTAGAACCTCACATTCAGTCAA ATGGGAATGATAATTCTCAGGCCACAGAACAGGCTTCCTCAGCTCAAGTGGATGCTCCGAAGAAGTCTTATGCATCAATT GTGAAAGTCCAAAAAGGGATTTTGGGACCAGCTAGAGCCTATGTGCCTACTAATACTTTAAAGACAGTGCCTAACAAAAC TGAGATCCCGGTAGTTGTGTCGGAACAGTCTGCTGCTGTACCTCAAGCTGCACAAGATAGTATTGGCAAACCTGAAGCTG AAAGTAGTGATACTCATGAGGAAGTTGAGGTTTACTCCATTTACGTTCGAAATCTGCCCTTCAATGTGACGGTTGCTCAG TTGGAAGAGGAGTTTAAGAAATTTGGATCCATCAAACCAGGAGGCATCCAAATCAGAAATAATAAGCCACAGGGATACTG TTTTGGCTTTGTTGAGTTCCTATCTCCAAATGCAATGCATAGTGCAGTTAAGGCTTCACCTGTTACTATTGCTGGGCGTT CTGCTATAGTTGAGATGAAGAAGACCACAGCTCGAGTTGGTGGTGGTCCTGGAAGAGTTAGGATTTCACCCGCAAGAGGT GGGTTTCGAAATGACTCTTTTAGGGGTCGTGGGAACTATGGTGTTGGCGGTCGGAGCTTTGGTCGTGTTGATTATGGAAA CCGTGGTGGTGACTTTGGCGGTCGAGGCCGCGGGCCTGGCGGACATGGAGAAGGTTATCAGCAAGGGAGAGGGAGAGGTG GCAGTGGCAGGTTCGGTGCAACAAGACGAGATGTTGTTCCCAACTGA
Protein sequence (LotjaGi1g1v0513200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASETATNSSAPSPQLVCNAFVDQYYHILHHTPESVYRFYQDSSVVSRPDSNGVMTSVTTMKGINEMIISLNFKDFKAEI KTADAQKSYKEGVTVLVTGCLTGKDNLTRKFAQSFFLAPQENGYFVLNDVFRYFEDSEPSEQHPVDEDVDEAAVTETPEP EPGYAVDPPAPEPVNSHVNESQIIADKASELPNHPEAQIDNGNKDNVEPHIQSNGNDNSQATEQASSAQVDAPKKSYASI VKVQKGILGPARAYVPTNTLKTVPNKTEIPVVVSEQSAAVPQAAQDSIGKPEAESSDTHEEVEVYSIYVRNLPFNVTVAQ LEEEFKKFGSIKPGGIQIRNNKPQGYCFGFVEFLSPNAMHSAVKASPVTIAGRSAIVEMKKTTARVGGGPGRVRISPARG GFRNDSFRGRGNYGVGGRSFGRVDYGNRGGDFGGRGRGPGGHGEGYQQGRGRGGSGRFGATRRDVVPN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 458 | 458 | 1.2E-196 | ||
| PANTHER | 1 | 458 | 458 | 1.2E-196 | – | |
| Gene3D | 6 | 137 | 132 | 1.1E-35 | – | |
| SUPERFAMILY | 13 | 133 | 121 | 5.26E-37 | ||
| CDD | 13 | 133 | 121 | 3.32606E-40 | ||
| Pfam | 17 | 133 | 117 | 7.6E-29 | ||
| ProSiteProfiles | 17 | 133 | 117 | 32.111 | ||
| MobiDBLite | 137 | 176 | 40 | - | – | |
| MobiDBLite | 193 | 233 | 41 | - | – | |
| MobiDBLite | 205 | 233 | 29 | - | – | |
| Gene3D | 285 | 387 | 103 | 1.9E-14 | ||
| SUPERFAMILY | 301 | 414 | 114 | 2.01E-17 | ||
| ProSiteProfiles | 305 | 382 | 78 | 11.656 | ||
| SMART | 306 | 378 | 73 | 1.9E-10 | ||
| Pfam | 307 | 365 | 59 | 4.4E-10 | ||
| CDD | 307 | 378 | 72 | 1.92825E-12 | – | |
| MobiDBLite | 429 | 468 | 40 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0513200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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