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LotjaGi1g1v0514700.1

Overview

Field Value
Gene ID LotjaGi1g1v0514700
Transcript ID LotjaGi1g1v0514700.1
Lotus japonicus genome version Gifu v1.2
Description Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; TAIR: AT3G29760.3 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|O94336|YHM3_SCHPO Uncharacterized FCP1 homology domain-containing protein C1271.03c; TrEMBL-Plants: tr|A0A151RYH2|A0A151RYH2_CAJCA Putative FCP1 isogenyy domain-containing protein C1271.03c family; Found in the gene: LotjaGi1g1v0514700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:103718502..103723946) extracted from Lotus japonicus Gifu genome v1.2.

GTTTTGATGTCACCTCATACGCCTCCATTTTTTTTGAGAGAGAAAAAAATAAAATGAAAAGAAGTGAGAGATATGACTAA TAATAAGATAGGAAAGTAAGAGAGATATGAAGATGAAGAAGGTGGAAATGAGATAAAAGAGAAATAATAATATGAGTATA TCATAACTCACATCGTTTCTGAATTTTTCCGCTTCTCTAAACTATTCCTAATCAACAACCAACAACCTTGAAGCATAAGG GTCCATGCTTTCTTTTTTTTTTGTATTTTTTTATTTCCTATTTCTTTCGTTTACAAGTCAAGAAGAAAGAAGTCATTCTC CTTGTTTCTTTCAAAGTTGCAGAGTTTTGTAGAGACTTTGTCTGGCTAGCTCTCGCAGGAATTTGCTTAATCCCAAGTAA GTTTAATTGAAACTTAAGCACTTATCTACTGTCTTTCTGCCATTTTATATAGTATGAACTTGTGATATATATGAACTCTC ATGTTATATTTTGACCTGTCACAATAAAAAAATATTGATCCTTGTATGTTGAAGCTTCTCGCTAAGACTTGTGTTTATGG GGTTGTTTCTATGTATATGCGTCTTTGCTATTAGTTGGACTTGGAACTGTGTTTCTTGGACTTCAATTCTAGCAATTCTC ACTTGTTTATGTGTTTGTGTTTATTTATGCTTCATAAGTCTGTTGGATTTTCCTGTGTTGTTCTTCAATTCCAATTCGAT TTCTTTTCCTAATCAACCTCAAAATTCGTTTTTTGTTTGTTTGACTTTCTGATTTTATTGGTCTTCTTCATACCTTACTA TATTCAACTCCTGTAGCAAAGATCGCGCGTCAAGTTTCTCCTCCCTTTCCAAAATTTGTTGCGTGTCTACATTGTCATCT TTGTTTGATATTTAAAACTCTGGTTTTTTTTTCCGATAGCAATTTTTATTTATTGAATAAGCACAATCTATAAAGAGATT GGCAATGAAACAAGCCAACAAAACAACCAATCCCAAGAAGAACCAAACAATAGCCCAAAGAACCAAAGATCCCCAAAGAG ACAACCAGCGAAAGGGAAAAAACCAAACAAGACGATCTTTTGAAGAGACCACAAAAATTAACTTCCTACCTATAGTGGAT ATAGATCAGGTGAGGCTTTGTGTGACCTCAAATTTGACTTATTATAGGCCAAATTTTAAGGTTTGACCTGACCAATTAGC TTATTTAAAAGCCTATTAACTGTCCAAAAAATATATCCATTTTTCATGTGGGTGAACATTTAAAAAAATCTTTTGTCACC AATAATTTAATATACAATTTTTTTTCTTTTCAATGTTTTAGTTATTAAGATTTTACATTCTAATGATCGTGTAGTGTCAT CCAATTATTAGGGATATATATTATATATTAATCGACAAGCATAGAATGAATTTCTTGATTGAAGGTTTTGCTAGCTTATC TAAGACTTGATACCTTAAAGCGCCACTACCTTCTCAATTCTAGTATGTTTGGATTTATTTCCTCCTTTTTTCATAATCAA TTATGAAACCTTGAAGATACTCTCATATGCACTTACTTGGATAGCTGAACAGAGCAAGTGAATTGAAGGGGCTGGCATGG TTCTAAATATTGAAGATGCCAGTCAATTAATGGAGAGATAGAACACTACAAGGTTTTTCTTGTCTCCTCTTTAAAGTTTA GACCAATGGAACAACTGGAGTTTTAACTTTTCTTATCAGTAATTATATTTTTTTTGTAATCCTGATCCATTATTAAATTA TATTTGTTGTTGTTAGCTTGTTTTTCTGTAATACTTATACAATATGTTACCTTTTGAATCTCTTGATATCCATATTTTCA TAATCCATTAGCACATAGACAATGGGGCAACAAAACATGCTATAAATCATTGGGAGCTGAGTATACTAACAATGTTGTCA TATATATACAACAATTGCAGGGTTCCCTGGATCATCAATTTAAGATGGAGAAAATAGTGAATGATGAAGTAATTAGTGTC AAAGTGAGCAAATTATCTATAACTTCCATAAATGAAATGGAAGAAAATCAGCCAAAAAAGCTGCAAATTTCTTCAGTTGA AAGACCCATTAGATGTTTGAAGAAAAAGCTTCTTGTTCTTGATGTGAATGGGCTTCTAGTAGACATAGTCTCTCCCCCTC CAAAGCATAAAAAAGCAGATGCAACCATAGCAAGGAAAGCAAGTGAGTAATACCTAACTTGTTCTGTTTTGAATTAACTA TGCATACTTTTACTGTGTTGTCAAATAACGGATATCGTGGCACTATTGTAGCGCTTTGAGGGTTCACTATTATCTGCTAT CTGCCGCTATTTTCCGCAGGCTTGACATAGAGGATATTTGGCTTTCTGCTATTTTCTGCGATCCATGATTAACAATACTG CTTTGACTCTTATGTACTGTTTACTCATTGTTTATTCTGTTTGTCTTTCATTTCAGTATTCAAGAGGCCTTATTATCTTG AGTTTCTTAACTTCTGTTTCGAGAATTTTGAAGTGGGTGTGTGGTCTTCCAGAACCCAGTAAGTACACCTCAACTTGAAC ATTGTTATGTTAAATGTCACTTTGTCTGCATTTATATTCAGTAGCTGCCCCTCATTTTCTATGGATCTTTGATATTGTGA TTTGTGAGCAAATAATTAGCTGCAGCTTGTTAACTTTTTGGTCCTGTGATTTTTGTAGGAAAAATGTCGACAATGTCATT GATTATTTGATGGGAAACATGAAACAGAGGTTGCTGTTTTGTTGGGTAAGCACTTTATCCATTTTCTTTGATTTCCAAGA TGAAAATTTTCTGTTCCTCATTTTGAAACTTTTTGTCCTCTAGACAACCTGTTTTACTAAACTTGGTACAGAATGTATGT TGTTTCATGGCTGACATTAATTTTCATGTACTTGATAGTGTACTTCATACTTATTTCATTCAGGGATTATTCAGGTTTTC TGTTGCATTTCTTCAGTGCTATTCCATTGTGATATTGATAGTGAAAATTAAGCCATCTTGTTAGGGAATGCATTCTGGAA TTGTAATTCAGTTGCAGGACAGATTCTGATCTCTTGAAAGTCAGAAATTATAACTACAATTCTATGAATTAAATATCTTT GTTTTCTTCTCTATTTCTCCTATTTTCTTCATTATTTATGGTCTAGTTCTATCAGAACTTGCCACTTATCATGGAAATTG ATTTTAAATATGAATTTCTCTATTTTCGCCTCTGTTTTTTTGTTTTGTTTACAAAACATACATTTGATCAACTTGGAAGT CTTATAGATGCTTACATGGAATATCATTTTATCAAGCAAAGGTATGGTGATTCTATATTGATTGATGCATTCATTAGTTT TTAAACCTATTTGGTTGTTGGTAATTTGGTATAACTTAGAAAGCATGGTCTAATTTCATCCTATTCTACATATTATTGAC AGGGCCATTCTTATTGTACTGAAACAAGTTTCAAAACTCTTGAAAACAAGCACAAGACTTTGGTTTTCAAGGATTTGAGG AAAATTTGGGAGAATTCTGATCCTAGTGCTCAGTGGGAGAAGGGATATTATAATGAATCAAATACATTACTATTGGATGA TTCTCCCTACAAAGCATTGCTTAATCCTGTAAATAAACAAACCTTATTTTTTTCTTTTAGCATATTATATAATATTTCAT TTACTAACTTGTTGATTGTTTTAATAAATCATTGTAGCCACGCACCTCAGTCTTTCCGCATACATACAAATTTGAGAATC AGAACGACAATTCACTAGGTATGACGTATGATACAAAATGACATAATAGCATTCATAATTATGAAGTCAATAGAGTTTGC ATGAGGTTTTCTAAATTTTGCTAATGAGGCACTTATCATCATACAAAATTTGGCAGTTATACATTTTACATACACATTAC TAATGTTTAATTTTTTAATAACCACAAACATTAACGGAGGTTAATAACCCCTAAGATGTATGTTTAATGTATATCATGAA ATTTCGTATCTAACAATCACTTTCACTTTCCTTTGCTAATGGACTAGGCAGACTTGAATATTTATTTGGTTCTTTACTGC TCTCTTATATACTTCAAATAGTATTTTATTTAGCTTTCTTCTAACATTTGGCTTGAATCTCATTGTGGCCATGGGATAAA GGAAGATAAAACAAATTTTATTGTGATAGATATATGGCACACTTATAAGCCTACCCAAGTGTTTCCCTATGCTTTCAGAT TCAAAAACATTTTATTTGCTTATTTTCTTGTTGAAATATCTATTAGGGTAAATATCTCTAAAGCTCATAGAATGGTTAAC TAATAAAATATATGATTTATGGCAGCGGTTGAAGGCGATATGCGGCAATATCTAGAAGGTTTGGCAAATGCTGACAATAT GCAAAAGTATGTTGAGGAACACCCAATTGGTCAGGAAAGCATCAGGGAAAGCAGTGAATTTTGGAGCTTTTACCTTCAGG TTATTGATAGTGTTTCAGCCTCTTCTCAACCTAAATGGTGAAAATGTCAACTTGAATATCAATGTACACAATCCAAGGTA TATAGTTGTTCCAAAAGAAAAGTAGCGATATGGAAGGATTTTTTTGTTTTGTTTTGAAAACTACATGTCATCTTTGATGG ATTTGTATCCTCTTATTATAATACATTTTTGTGTTTTACAAGATTTGACTTTCTCTAAACCTTTTTCCTTGCTTTTAATA AAGGCTTAATTCTCAAATTAGTCCCTGTCTTTGTTTCGCCGTCTGAACCAGGTCCCTGATCGGAAAAATTTGTGCAAAAA GTCCCTATGAATGAAAATCGTTTGGGGCAAGTCCTCGCCGGAGCCCGGAGCTCCGGCGAGTGATGAAGTGGCGTGATGAC TAGATAAAAACTGATGACATGGCATTAAAAAAAAATTATTTTAACATTAAATTAAACATAAACTAATTTGTTTTAATCCT CAATTAACAAACTTAAGCATATTTCCCCAAACCTTTTCCTAATTACCCACTTATTACCCTCAATTCCTAAACCCAATCCC AATTCCATTTCCTAAGTTCATCTGCATTCTTAACTTTTCATGTGAGAACCTAAGTTCATCTGCATTCTTAACTTTTCATG TGAGAACCTAAGTTCATCTGAGAAACCTAAGTCCAATCCTTCCTGTGCGTTCGTTCGTTCTTCTGGCAAAGTGGATATAC ATTTCTTTCCTGTTCGATTTGGCAAAGTGTGAAGTAAGTAGACAACTCAACTCTCGATTAAGCATTGTGTTGATTATTAT GGTGATTATTCCTTTTGATTAAGCTTATTCTGAGATGGGTTTTGGGGTTTTTCATTCTCGATGGGTTTTGGGGTTATTCT GAGATGGGTTTTGTCGTTGTGGTTTTCATGGTCGATGGGTTTTGGGGGGTTTTCATGCTCGACTCAGGGATGGGTTGGGG TTTGC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0514700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGAAAATAGTGAATGATGAAGTAATTAGTGTCAAAGTGAGCAAATTATCTATAACTTCCATAAATGAAATGGAAGA AAATCAGCCAAAAAAGCTGCAAATTTCTTCAGTTGAAAGACCCATTAGATGTTTGAAGAAAAAGCTTCTTGTTCTTGATG TGAATGGGCTTCTAGTAGACATAGTCTCTCCCCCTCCAAAGCATAAAAAAGCAGATGCAACCATAGCAAGGAAAGCAATA TTCAAGAGGCCTTATTATCTTGAGTTTCTTAACTTCTGTTTCGAGAATTTTGAAGTGGGTGTGTGGTCTTCCAGAACCCA GAAAAATGTCGACAATGTCATTGATTATTTGATGGGAAACATGAAACAGAGGTTGCTGTTTTGTTGGGGCCATTCTTATT GTACTGAAACAAGTTTCAAAACTCTTGAAAACAAGCACAAGACTTTGGTTTTCAAGGATTTGAGGAAAATTTGGGAGAAT TCTGATCCTAGTGCTCAGTGGGAGAAGGGATATTATAATGAATCAAATACATTACTATTGGATGATTCTCCCTACAAAGC ATTGCTTAATCCTCCACGCACCTCAGTCTTTCCGCATACATACAAATTTGAGAATCAGAACGACAATTCACTAGCGGTTG AAGGCGATATGCGGCAATATCTAGAAGGTTTGGCAAATGCTGACAATATGCAAAAGTATGTTGAGGAACACCCAATTGGT CAGGAAAGCATCAGGGAAAGCAGTGAATTTTGGAGCTTTTACCTTCAGGTTATTGATAGTGTTTCAGCCTCTTCTCAACC TAAATGGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0514700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEKIVNDEVISVKVSKLSITSINEMEENQPKKLQISSVERPIRCLKKKLLVLDVNGLLVDIVSPPPKHKKADATIARKAI FKRPYYLEFLNFCFENFEVGVWSSRTQKNVDNVIDYLMGNMKQRLLFCWGHSYCTETSFKTLENKHKTLVFKDLRKIWEN SDPSAQWEKGYYNESNTLLLDDSPYKALLNPPRTSVFPHTYKFENQNDNSLAVEGDMRQYLEGLANADNMQKYVEEHPIG QESIRESSEFWSFYLQVIDSVSASSQPKW
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.1000
4 241 238 9.8E-51
IPR023214
PANTHER
PTHR12210:SF134
15 265 251 1.2E-126 –
PANTHER
PTHR12210
15 265 251 1.2E-126 –
ProSiteProfiles
PS50969
43 224 182 26.694
IPR004274
SUPERFAMILY
SSF56784
43 233 191 3.5E-22
IPR036412
SMART
SM00577
46 209 164 6.6E-7
IPR004274
Pfam
PF03031
48 230 183 6.1E-24
IPR004274

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0514700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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