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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0519000 |
| Transcript ID | LotjaGi1g1v0519000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0519000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104264029..104268089) extracted from Lotus japonicus Gifu genome v1.2.
AATCACTTTTATAAATTTGATATGGAGATCCTTATCATTTATCAACATTTATTAAGGACAGGGCAATTCTGGTTGAGAAG ATATTCAGCTCTCTGGTATAAATCAAAACCAAAAAGCTCTCTCTACCCCAGTATACTGCAAGATGAACAAGCAGCGTCCA AGAGGTAGCAATCTCCCTGAGGATTTGATTCCACAGATTCTGCTGAGGCTACCAGTTCGATCTCTGCTCCGTTTCAAAAC CGTCTGCAAATCGTGGCTATCTCTGATTTCCGATCCCCAATTCGGTAAATCCCATTTTGACCTAGCTGCTTCACCCTCCC ACCGATATCAGGTTAGAACGATTGATGATTCTGTTATTAGTTTCCAAGATATAGATGAATCATTTCACGATGCGTCTGCT GTTGTAAAACTCAAATGTCCACTTCCATTTTCCCCCGACCAAAATATTGCTGGTACGTATCCTGATGATGACATTTTCAA CGATCCAGAATGTTTGTGTTCTTGCAGAGGATTTATACTTTTAATCTATGATTTGGGTAATAACATTATATGGAATCCAG CAACTGGTGTTCATACACGAATTCCAGGAAAAGATAACCTTAATCAGGTCACTTTTGATTATCTAACTGGTTTTGGCTAT GACAAGTTAACTGATGACTACTTGTTAGTTCTTATATCGCCGATGGATTGGGACCCCTTTTTTCCTGATGAAGTTGAAGA TTTTCGTGAATCGGATTATTACATTGAGTGTTTTTCCTTGAGAACAAATTCATGGTCTCGCGTCGCGGGTGTTAATGTTC GATATGCGGATATTGATTATGATTCAAGAATTGGGTCCCTCTTGAATGAGGCTCTGCATTGGTTGGTTATCTCTTTTGAT ACCAAGCTTCAAGTGATTATTGCCTTTGATTTGGTCGAGAGGAGTTTATCAGAGATTCCTATATCACATGATTTAGCCAC GACATTAAACCATAGACAATATTATTTGAGGGTCATGGGAGAATATCTCAGTCTATGTTACCCGGGTAATATGAATTCAA TGGCTGAGATATGGATGATGAAAAACTATAAAGTGCAGTCATCTTGGAGTAAGGTGTTTGCTTTTTCTACTTGTAATATT CCCCGCAATGTCTTTTTTCCAATATGTATGACCACATATGGTGAAATTTTTGGATCAAATGCCTCTGGAAGATTCATGAT ACTTAATGACAAAGGATGGCTAGTTGATATGTACACAAGTTGTCCCACACCTTGTATAGATCCATATATTCAAGCAGATT GTGGTGTGTATAGAGAGAGTTTACTATCACTCCCTAATGACTTTGAGAAAGCAAGTGAAGATGACCAGCTGACGAGTGCC GCAGAGGAAGCAAGTGAAGATGACCAAGAGTAACTGACAATAAGAATTAGTGTATGTAGTTCTTCAATCCTTTTCACCAT TTGATTACTATTTTTATCGTGCATTAGAAAAATGAGAAGTCATATGTAGTACACAACTACACATGATACAAGAAGATGAT TACGTAACCTATCTGGTACTCTCTCCTTCCCAAGTGATTTTATTTCTTTCTTCATAAATAAGTGTGACACCTGAAATTGC AAGGAAAGATGAGGTTTGGTGGTAGACTGCATTTACTAATTGATAGTGATACCATTTGTTGTCTCATTTGCTTAGAATAA TTGAAGGCAATTTTGGTAGAAAGTTATATAAGAAAAACAACTAAGGTTGGAGTGAAATAGAAGTTATCAAACTATGATCC TATAGAATTCATATATGCTGACATTTAAAATAAGCTCATCTTTTTCCAGCAGGCCATGCAGGGTGCAAGAGTGCTCTAAA ATGTTATGCTTGATGTCTTGGCTTCCCTTCAAATGACGATATTGCAAGAAGAGATTATAGCATTTGGAGGAGAATTTTAT TTATATGATGTTAAATCATCTTGCTTCAGTAGTGTTTAGTAGTTAGTGGTGATTTGAGAAAGTTTGGTCAAGGCAGGCTT TTGAACTTAATTATATTTCATAGTATGAGTTAGGGAATTCTGGCTGGAGTTAATACCTTTTTAGCATCTTAATCTATTTT ACTCTTAAACTTGTTATTGTAGTTGCAGTTTGTTTCTTTTATGGTCGTTGACATGGTTTTCATGTTGCAATGATTCCTGA CTTTTCTAAGGTACTGTGCTGTTAGCTTGTTATGCATTTTGACTTGAGTTATGGTGATATTGTCGACCTTAATTATCTTG CGACTTATCAAGTTATGATATGGATTAATGTCGCATCTGGTCACTTCAACCTCTTAATCACACTGATGTTCATATGGTAT CTGTCATATACATTTTCATGACATCTGTAAAGATTTTTTGATTGCCTATGGCAATGATGGTGCAACTGTGCAAGGATTGA AAAATTATAGCTATACAGAACTCGCCATTGCCAATATTTCCATTACTTGTTCTTCCTCTGTTTAGATTATATTTACTGTA AGATAGCAAACTTTTGTAATATGCAAGCTTGCTTTTGATATTTGGACTGCATGGTATAAAATTATGGGCTCATGGGGCTT AGGATGTTTTATTTTTGTTCCCATCCTAGCCTCATTGGCTGATCCTTTCGAAATGGAACTCCTATTGATTCCTTGTTCTT GAATTCTTTGATGCGGGTTCCATCTACTGAGAATGTGAAACAGAGTTCATGCTGTTAAATAGAAATTGCATAAAAGAAAA CGTTTTGAAGGAACCAGAGATAGAACTGAATTGAATATTGATCATAGATAGAGAAGTGCTTACACAATGTGCTGAGGATT CCTAAGAATGGAATAAGTGTGAAATCTGCAGTTGGGTCGAACCAGAGGTAGAACTATTGCTCTCTGTTTCATTTGCCTTT GCTGAACACATTCGTGTCCCCACTCAGATTCCCCAAGAATTTAAAGTCAACCTCATCCCAATTTGACCCTTTTGATGACA ACTGTATTAGGAATTTGAAAGTTGATACTTGATAGCATTGGCAATTTGGCATTGAGTTCTGAGACATGCATAAACATAAT ATATTAAACTTATAATACTTACATAGTAGGCAGTGCAGTGCCTGCAGAGCTTCCGGTTACAAACTTGAGCTGAATCATTC AATTCTAGCAGTTTTCAGTATTGATTTCAATAAGTTGCCATTGCCTTGTATGTCATTTTACTTTCAAGATTGCTTACTCG TAACATAAAGTTTATAATGATAGATATTTGGTGGCTTTGTTTCAGTCCTTGGTAGTCACTATCTTTACCTTCAAACTTAC CCCAATGTGTTCATTACCACTATAGATTTGTACTGTTAGTGTTGTTAGTGTTTATTACCACTTAAAGTTGTGTCAGTTTT GAGAGAAAACCTACATGTATAAAATAGTTCAAAAATTGCTCGGTTTATTTGGTACATGTAAAATTTTCTCCAGAGAGTTG TTATGATTCTAGTAAAGTATCTCCAGATGAGTGTTGTTATGGTTCTCACTTCTCAGGTAAAGTCTCTCTAGAAAGAGTGA TTATGGACAAATGTCTTGTCCCCGAGGGTTAGCTCAAGTGGTAAGAGCTAGGGGACATAAGGGTTGGGGAGGGGAAGGTC CAGGGTTCGAATCCTAGAAGGGAAATTTGAAGAGATTTTCTAACTTCTAACAACTAACCACTGACATTTGCATATAAAAA AAAAGGACAAATGTCCTAATTATATGATTCAAATTTGGAGTGGGAGTTGGAGTTGTTTATTGATATGAACACACACATCA TATACATTGTTTGGAGTTATAAGGAGTAAGGAAGTCAGTGAACCTAATCTGGACTGTCAATCTTACTTATTCCATTGGGC TAGCTATGAAATCTAGGGGTTGACTCGTGGTTGAAGGTTGGTTTATGTTTATATGAGGTTTAGGGGACAATCTAATTTTT AGACGATCAAAAGTACTTGAGATATCTCTTTGCAAACTTAGTCCAGCCTTACAAATACTCTGGTAATTATCATGGTCAAT TAAGATGCACCTATAGTTGTCGTATAGTGCACTGTTCCCAAAGTCTGATCTTTCTTCTTGG
CDS sequence (LotjaGi1g1v0519000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACAAGCAGCGTCCAAGAGGTAGCAATCTCCCTGAGGATTTGATTCCACAGATTCTGCTGAGGCTACCAGTTCGATC TCTGCTCCGTTTCAAAACCGTCTGCAAATCGTGGCTATCTCTGATTTCCGATCCCCAATTCGGTAAATCCCATTTTGACC TAGCTGCTTCACCCTCCCACCGATATCAGGTTAGAACGATTGATGATTCTGTTATTAGTTTCCAAGATATAGATGAATCA TTTCACGATGCGTCTGCTGTTGTAAAACTCAAATGTCCACTTCCATTTTCCCCCGACCAAAATATTGCTGGTACGTATCC TGATGATGACATTTTCAACGATCCAGAATGTTTGTGTTCTTGCAGAGGATTTATACTTTTAATCTATGATTTGGGTAATA ACATTATATGGAATCCAGCAACTGGTGTTCATACACGAATTCCAGGAAAAGATAACCTTAATCAGGTCACTTTTGATTAT CTAACTGGTTTTGGCTATGACAAGTTAACTGATGACTACTTGTTAGTTCTTATATCGCCGATGGATTGGGACCCCTTTTT TCCTGATGAAGTTGAAGATTTTCGTGAATCGGATTATTACATTGAGTGTTTTTCCTTGAGAACAAATTCATGGTCTCGCG TCGCGGGTGTTAATGTTCGATATGCGGATATTGATTATGATTCAAGAATTGGGTCCCTCTTGAATGAGGCTCTGCATTGG TTGGTTATCTCTTTTGATACCAAGCTTCAAGTGATTATTGCCTTTGATTTGGTCGAGAGGAGTTTATCAGAGATTCCTAT ATCACATGATTTAGCCACGACATTAAACCATAGACAATATTATTTGAGGGTCATGGGAGAATATCTCAGTCTATGTTACC CGGGTAATATGAATTCAATGGCTGAGATATGGATGATGAAAAACTATAAAGTGCAGTCATCTTGGAGTAAGGTGTTTGCT TTTTCTACTTGTAATATTCCCCGCAATGTCTTTTTTCCAATATGTATGACCACATATGGTGAAATTTTTGGATCAAATGC CTCTGGAAGATTCATGATACTTAATGACAAAGGATGGCTAGTTGATATGTACACAAGTTGTCCCACACCTTGTATAGATC CATATATTCAAGCAGATTGTGGTGTGTATAGAGAGAGTTTACTATCACTCCCTAATGACTTTGAGAAAGCAAGTGAAGAT GACCAGCTGACGAGTGCCGCAGAGGAAGCAAGTGAAGATGACCAAGAGTAA
Protein sequence (LotjaGi1g1v0519000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNKQRPRGSNLPEDLIPQILLRLPVRSLLRFKTVCKSWLSLISDPQFGKSHFDLAASPSHRYQVRTIDDSVISFQDIDES FHDASAVVKLKCPLPFSPDQNIAGTYPDDDIFNDPECLCSCRGFILLIYDLGNNIIWNPATGVHTRIPGKDNLNQVTFDY LTGFGYDKLTDDYLLVLISPMDWDPFFPDEVEDFRESDYYIECFSLRTNSWSRVAGVNVRYADIDYDSRIGSLLNEALHW LVISFDTKLQVIIAFDLVERSLSEIPISHDLATTLNHRQYYLRVMGEYLSLCYPGNMNSMAEIWMMKNYKVQSSWSKVFA FSTCNIPRNVFFPICMTTYGEIFGSNASGRFMILNDKGWLVDMYTSCPTPCIDPYIQADCGVYRESLLSLPNDFEKASED DQLTSAAEEASEDDQE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 4 | 59 | 56 | 1.44E-14 | ||
| ProSiteProfiles | 5 | 51 | 47 | 10.186 | ||
| PANTHER | 8 | 368 | 361 | 3.0E-84 | – | |
| PANTHER | 8 | 368 | 361 | 3.0E-84 | – | |
| Gene3D | 9 | 47 | 39 | 7.3E-9 | – | |
| Pfam | 9 | 48 | 40 | 3.0E-9 | ||
| SMART | 11 | 51 | 41 | 6.0E-9 | ||
| TIGRFAM | 120 | 342 | 223 | 5.4E-19 | ||
| Pfam | 234 | 335 | 102 | 8.2E-5 | ||
| MobiDBLite | 395 | 416 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0519000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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